Wall clock time and date at job start Tue Mar 31 2020 07:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47142 * 2 1 4 4 C 1.34235 * 116.99985 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99966 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99896 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.47410 * 60.00032 * 6 4 3 8 8 C 1.53000 * 109.47264 * 180.02562 * 6 4 3 9 9 C 1.52997 * 109.47060 * 60.00033 * 8 6 4 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 6 11 11 N 1.46898 * 109.47548 * 179.97438 * 10 9 8 12 12 C 1.47483 * 111.00022 * 199.03140 * 11 10 9 13 13 C 1.53517 * 87.92956 * 138.70473 * 12 11 10 14 14 C 1.50694 * 114.16629 * 220.32654 * 13 12 11 15 15 H 1.08007 * 119.99990 * 93.84258 * 14 13 12 16 16 C 1.37879 * 120.00392 * 273.84136 * 14 13 12 17 17 N 1.31513 * 119.99822 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00492 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46855 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47512 * 119.99681 * 18 16 14 21 21 H 1.48496 * 109.47234 * 240.00181 * 18 16 14 22 22 C 1.47483 * 110.99979 * 295.00310 * 11 10 9 23 23 C 1.53005 * 109.47159 * 300.00546 * 10 9 8 24 24 C 1.52997 * 109.47452 * 59.99536 * 23 10 9 25 25 H 1.08999 * 109.46822 * 299.99838 * 1 2 3 26 26 H 1.08995 * 109.47160 * 59.99208 * 1 2 3 27 27 H 1.08999 * 109.47046 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46739 * 240.00940 * 2 1 3 29 29 H 1.08992 * 109.47431 * 120.00350 * 2 1 3 30 30 H 1.09002 * 109.47508 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47437 * 300.00374 * 7 6 4 32 32 H 1.09001 * 109.47109 * 59.99585 * 7 6 4 33 33 H 1.09002 * 109.47398 * 180.02562 * 8 6 4 34 34 H 1.09001 * 109.47194 * 300.00383 * 8 6 4 35 35 H 1.08996 * 109.47853 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.47153 * 300.00319 * 9 8 6 37 37 H 1.09002 * 109.46716 * 60.00091 * 10 9 8 38 38 H 1.08998 * 113.47574 * 253.46824 * 12 11 10 39 39 H 1.08999 * 113.47553 * 23.93798 * 12 11 10 40 40 H 1.09001 * 114.16948 * 87.62500 * 13 12 11 41 41 H 0.97003 * 120.00098 * 180.02562 * 17 16 14 42 42 H 1.09000 * 113.47690 * 336.05764 * 22 11 10 43 43 H 1.08996 * 113.47446 * 106.53154 * 22 11 10 44 44 H 1.09002 * 109.46935 * 299.99411 * 23 10 9 45 45 H 1.09001 * 109.46812 * 179.97438 * 23 10 9 46 46 H 1.08993 * 109.47194 * 179.97438 * 24 23 10 47 47 H 1.09002 * 109.46695 * 59.99734 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 6 3.4498 3.6836 1.2499 8 6 5.4487 2.8573 -0.0014 9 6 5.9191 2.1114 -1.2516 10 6 5.4464 2.8592 -2.4999 11 7 5.8986 2.1434 -3.7003 12 6 5.8726 3.0248 -4.8825 13 6 7.2147 2.4087 -5.3021 14 6 8.2005 3.4010 -5.8629 15 1 8.9323 3.8604 -5.2149 16 6 8.1684 3.7224 -7.2033 17 7 7.2770 3.1634 -7.9924 18 14 9.3908 4.9518 -7.8987 19 1 10.2819 5.4323 -6.8123 20 1 10.2058 4.2971 -8.9534 21 1 8.6570 6.1029 -8.4832 22 6 7.3703 2.1504 -3.7969 23 6 3.9185 2.9394 -2.4984 24 6 3.4480 3.6853 -1.2482 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8668 4.6907 1.2506 31 1 2.3613 3.7407 1.2506 32 1 3.7862 3.1509 2.1394 33 1 5.8653 3.8646 -0.0006 34 1 5.7854 2.3245 0.8878 35 1 7.0076 2.0539 -1.2525 36 1 5.5025 1.1041 -1.2521 37 1 5.8631 3.8665 -2.4995 38 1 5.0583 2.8024 -5.5721 39 1 5.9395 4.0844 -4.6357 40 1 7.1221 1.5041 -5.9030 41 1 7.2546 3.3892 -8.9355 42 1 7.8367 2.9766 -3.2604 43 1 7.8251 1.1870 -3.5665 44 1 3.5018 1.9321 -2.4988 45 1 3.5818 3.4726 -3.3875 46 1 2.3596 3.7428 -1.2474 47 1 3.8648 4.6926 -1.2478 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171948716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:38 Heat of formation + Delta-G solvation = -73.440491 kcal Electronic energy + Delta-G solvation = -25170.788101 eV Core-core repulsion = 21739.824564 eV Total energy + Delta-G solvation = -3430.963536 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.18238 -39.29656 -37.65799 -36.28368 -33.22190 -32.15947 -31.65193 -30.70354 -28.10893 -25.74517 -24.88014 -24.63618 -23.19643 -22.44488 -22.21015 -20.22244 -19.60640 -18.55752 -17.27819 -16.79568 -16.63340 -15.91983 -15.21540 -14.66687 -14.47437 -14.36410 -14.10314 -13.84410 -13.80394 -13.52405 -12.99788 -12.82342 -12.56541 -12.49416 -12.14846 -12.13528 -12.08346 -11.82305 -11.72026 -11.42588 -11.22290 -11.09990 -10.95231 -10.82817 -10.66527 -10.64747 -10.51603 -10.31296 -9.92594 -9.74319 -9.51875 -9.06410 -8.84818 -8.40644 -7.88490 -6.02890 -4.06973 2.23612 2.59070 3.28788 3.37043 3.40727 4.37633 4.41641 4.50950 4.59592 4.73892 4.78921 4.92874 4.96464 5.07857 5.14700 5.27168 5.29210 5.44999 5.47741 5.52633 5.56149 5.58094 5.60021 5.64575 5.73550 5.77951 5.88476 5.98660 6.04006 6.08200 6.18095 6.28380 6.34122 6.35891 6.39651 6.53357 6.62831 6.75884 6.83485 6.88269 7.19141 7.28748 7.76661 7.78987 7.95754 8.19268 8.41821 8.96458 9.57702 11.06748 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026519 B = 0.003387 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.580316 B = 8264.986046 C = 8615.849989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.474 3.526 5 O -0.497 6.497 6 C -0.049 4.049 7 C -0.141 4.141 8 C -0.096 4.096 9 C -0.125 4.125 10 C 0.052 3.948 11 N -0.480 5.480 12 C 0.006 3.994 13 C 0.040 3.960 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.002 4.002 23 C -0.110 4.110 24 C -0.105 4.105 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.041 0.959 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.260 0.740 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.329 -0.680 18.420 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.317 3.683 5 O -0.384 6.384 6 C -0.050 4.050 7 C -0.198 4.198 8 C -0.134 4.134 9 C -0.163 4.163 10 C -0.057 4.057 11 N -0.202 5.202 12 C -0.123 4.123 13 C 0.021 3.979 14 C -0.552 4.552 15 H 0.075 0.925 16 C -0.137 4.137 17 N -0.524 5.524 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.131 4.131 23 C -0.148 4.148 24 C -0.143 4.143 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.593 -1.638 18.269 22.249 hybrid contribution 0.986 1.325 -0.381 1.695 sum -11.607 -0.313 17.888 21.326 Atomic orbital electron populations 1.21793 0.92746 1.02866 1.03434 1.23001 0.95259 0.80559 1.02588 1.86494 1.24830 1.32037 1.84112 1.23643 0.80326 0.92524 0.71825 1.90613 1.60019 1.43126 1.44635 1.20643 0.96885 0.88994 0.98459 1.21863 1.02160 1.00522 0.95285 1.21493 0.90949 1.01406 0.99532 1.21799 1.00969 1.01324 0.92183 1.22166 0.94736 0.96081 0.92742 1.68903 1.11477 1.37993 1.01860 1.24001 1.02000 0.94775 0.91485 1.20101 0.91659 0.96745 0.89358 1.21083 1.16275 1.24166 0.93697 0.92460 1.25021 0.95467 0.96129 0.97052 1.69984 1.34590 1.42723 1.05093 0.86575 0.81339 0.81209 0.79107 1.19746 1.20932 1.21022 1.23922 0.88708 0.99299 1.01128 1.21503 0.95837 1.00429 0.97037 1.21647 1.01273 0.99200 0.92225 0.91663 0.91377 0.90360 0.91103 0.91497 0.90903 0.91306 0.92237 0.90731 0.91309 0.91886 0.89054 0.94055 0.92031 0.93086 0.91926 0.92979 0.92977 0.92266 0.92028 0.91292 0.90695 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.71 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.36 -4.32 10.03 -39.27 -0.39 -4.71 16 4 C 0.47 6.41 5.04 36.00 0.18 6.59 16 5 O -0.50 -8.05 13.41 -18.75 -0.25 -8.30 16 6 C -0.05 -0.56 0.72 -155.66 -0.11 -0.68 16 7 C -0.14 -1.22 8.41 37.16 0.31 -0.91 16 8 C -0.10 -1.20 4.37 -26.73 -0.12 -1.32 16 9 C -0.13 -2.00 4.89 -26.73 -0.13 -2.13 16 10 C 0.05 0.90 1.55 -67.71 -0.10 0.80 16 11 N -0.48 -10.07 6.13 -236.57 -1.45 -11.52 16 12 C 0.01 0.15 6.82 -7.53 -0.05 0.10 16 13 C 0.04 1.04 3.77 -91.24 -0.34 0.69 16 14 C -0.51 -14.18 8.82 -34.44 -0.30 -14.49 16 15 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 16 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 17 N -0.89 -25.83 13.26 55.43 0.74 -25.09 16 18 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.00 -0.04 6.13 -7.54 -0.05 -0.09 16 23 C -0.11 -1.69 5.15 -26.73 -0.14 -1.83 16 24 C -0.11 -1.24 4.67 -26.73 -0.12 -1.37 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 29 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.06 1.03 7.34 -51.93 -0.38 0.65 16 36 H 0.09 1.65 5.52 -51.93 -0.29 1.36 16 37 H 0.04 0.74 7.55 -51.93 -0.39 0.35 16 38 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.05 1.19 7.57 -51.93 -0.39 0.80 16 40 H 0.06 1.77 8.11 -51.93 -0.42 1.35 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.05 1.12 7.79 -51.93 -0.40 0.71 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.06 1.03 7.22 -51.93 -0.37 0.65 16 45 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 46 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 47 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -30.38 364.92 -9.87 -40.25 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.52 Total: 0.44 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -0.46 Total: -12.75 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: -0.72 Total: -36.61 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.65 Total: -13.02 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.38 -9.87 -40.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171948716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.191 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds