Wall clock time and date at job start Tue Mar 31 2020 07:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47142 * 2 1 4 4 C 1.34235 * 116.99985 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99966 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99896 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.47410 * 60.00032 * 6 4 3 8 8 C 1.53000 * 109.47264 * 180.02562 * 6 4 3 9 9 C 1.52997 * 109.47060 * 60.00033 * 8 6 4 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 6 11 11 N 1.46898 * 109.47548 * 179.97438 * 10 9 8 12 12 C 1.47483 * 111.00022 * 199.03140 * 11 10 9 13 13 C 1.53517 * 87.92956 * 138.70473 * 12 11 10 14 14 C 1.50694 * 114.16629 * 220.32654 * 13 12 11 15 15 H 1.08007 * 119.99990 * 93.84258 * 14 13 12 16 16 C 1.37879 * 120.00392 * 273.84136 * 14 13 12 17 17 N 1.31513 * 119.99822 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00492 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46855 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47512 * 119.99681 * 18 16 14 21 21 H 1.48496 * 109.47234 * 240.00181 * 18 16 14 22 22 C 1.47483 * 110.99979 * 295.00310 * 11 10 9 23 23 C 1.53005 * 109.47159 * 300.00546 * 10 9 8 24 24 C 1.52997 * 109.47452 * 59.99536 * 23 10 9 25 25 H 1.08999 * 109.46822 * 299.99838 * 1 2 3 26 26 H 1.08995 * 109.47160 * 59.99208 * 1 2 3 27 27 H 1.08999 * 109.47046 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46739 * 240.00940 * 2 1 3 29 29 H 1.08992 * 109.47431 * 120.00350 * 2 1 3 30 30 H 1.09002 * 109.47508 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47437 * 300.00374 * 7 6 4 32 32 H 1.09001 * 109.47109 * 59.99585 * 7 6 4 33 33 H 1.09002 * 109.47398 * 180.02562 * 8 6 4 34 34 H 1.09001 * 109.47194 * 300.00383 * 8 6 4 35 35 H 1.08996 * 109.47853 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.47153 * 300.00319 * 9 8 6 37 37 H 1.09002 * 109.46716 * 60.00091 * 10 9 8 38 38 H 1.08998 * 113.47574 * 253.46824 * 12 11 10 39 39 H 1.08999 * 113.47553 * 23.93798 * 12 11 10 40 40 H 1.09001 * 114.16948 * 87.62500 * 13 12 11 41 41 H 0.97003 * 120.00098 * 180.02562 * 17 16 14 42 42 H 1.09000 * 113.47690 * 336.05764 * 22 11 10 43 43 H 1.08996 * 113.47446 * 106.53154 * 22 11 10 44 44 H 1.09002 * 109.46935 * 299.99411 * 23 10 9 45 45 H 1.09001 * 109.46812 * 179.97438 * 23 10 9 46 46 H 1.08993 * 109.47194 * 179.97438 * 24 23 10 47 47 H 1.09002 * 109.46695 * 59.99734 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 6 3.4498 3.6836 1.2499 8 6 5.4487 2.8573 -0.0014 9 6 5.9191 2.1114 -1.2516 10 6 5.4464 2.8592 -2.4999 11 7 5.8986 2.1434 -3.7003 12 6 5.8726 3.0248 -4.8825 13 6 7.2147 2.4087 -5.3021 14 6 8.2005 3.4010 -5.8629 15 1 8.9323 3.8604 -5.2149 16 6 8.1684 3.7224 -7.2033 17 7 7.2770 3.1634 -7.9924 18 14 9.3908 4.9518 -7.8987 19 1 10.2819 5.4323 -6.8123 20 1 10.2058 4.2971 -8.9534 21 1 8.6570 6.1029 -8.4832 22 6 7.3703 2.1504 -3.7969 23 6 3.9185 2.9394 -2.4984 24 6 3.4480 3.6853 -1.2482 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8668 4.6907 1.2506 31 1 2.3613 3.7407 1.2506 32 1 3.7862 3.1509 2.1394 33 1 5.8653 3.8646 -0.0006 34 1 5.7854 2.3245 0.8878 35 1 7.0076 2.0539 -1.2525 36 1 5.5025 1.1041 -1.2521 37 1 5.8631 3.8665 -2.4995 38 1 5.0583 2.8024 -5.5721 39 1 5.9395 4.0844 -4.6357 40 1 7.1221 1.5041 -5.9030 41 1 7.2546 3.3892 -8.9355 42 1 7.8367 2.9766 -3.2604 43 1 7.8251 1.1870 -3.5665 44 1 3.5018 1.9321 -2.4988 45 1 3.5818 3.4726 -3.3875 46 1 2.3596 3.7428 -1.2474 47 1 3.8648 4.6926 -1.2478 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171948716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:37 Heat of formation + Delta-G solvation = -91.416932 kcal Electronic energy + Delta-G solvation = -25171.567618 eV Core-core repulsion = 21739.824564 eV Total energy + Delta-G solvation = -3431.743053 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.25633 -40.86846 -38.83646 -37.37128 -34.92810 -33.67986 -32.50069 -31.80714 -29.72312 -27.20589 -26.65612 -25.66797 -24.64455 -23.56387 -23.23871 -21.55837 -20.73321 -20.40941 -18.66756 -18.28917 -17.69918 -17.04602 -16.92848 -16.25767 -15.97364 -15.60247 -15.38189 -15.16101 -14.74383 -14.70439 -14.29777 -13.81600 -13.70570 -13.57822 -13.30212 -13.24620 -13.19433 -13.12686 -12.91540 -12.88112 -12.78045 -12.49848 -12.35159 -12.26572 -12.11380 -11.85967 -11.81878 -11.51677 -11.41653 -11.08456 -10.95054 -10.90107 -10.73998 -10.49594 -9.64814 -8.15731 -6.27497 1.21536 1.41340 1.42882 1.54980 1.70240 2.41967 3.13189 3.23222 3.45030 3.56948 3.78938 3.92329 3.97001 4.00709 4.08902 4.12860 4.27215 4.33368 4.37133 4.40437 4.46540 4.52140 4.62732 4.65003 4.74460 4.80807 4.82478 4.88023 4.90511 4.91981 4.97871 5.04043 5.07185 5.12962 5.17321 5.18134 5.20742 5.25240 5.31432 5.35063 5.57026 5.61638 5.65566 5.83785 6.29222 6.45955 6.78243 6.81838 7.41026 8.94428 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026519 B = 0.003387 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.580316 B = 8264.986046 C = 8615.849989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 O -0.357 6.357 4 C 0.470 3.530 5 O -0.532 6.532 6 C -0.047 4.047 7 C -0.135 4.135 8 C -0.092 4.092 9 C -0.120 4.120 10 C 0.051 3.949 11 N -0.485 5.485 12 C 0.022 3.978 13 C 0.022 3.978 14 C -0.529 4.529 15 H 0.059 0.941 16 C 0.013 3.987 17 N -0.923 5.923 18 Si 0.960 3.040 19 H -0.263 1.263 20 H -0.281 1.281 21 H -0.279 1.279 22 C 0.015 3.985 23 C -0.106 4.106 24 C -0.098 4.098 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.026 0.974 41 H 0.263 0.737 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.060 0.940 46 H 0.091 0.909 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.800 1.307 20.395 24.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.314 3.686 5 O -0.421 6.421 6 C -0.048 4.048 7 C -0.192 4.192 8 C -0.129 4.129 9 C -0.158 4.158 10 C -0.058 4.058 11 N -0.208 5.208 12 C -0.108 4.108 13 C 0.002 3.998 14 C -0.567 4.567 15 H 0.078 0.922 16 C -0.186 4.186 17 N -0.562 5.562 18 Si 0.785 3.215 19 H -0.187 1.187 20 H -0.206 1.206 21 H -0.204 1.204 22 C -0.114 4.114 23 C -0.144 4.144 24 C -0.136 4.136 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.081 0.352 20.266 24.123 hybrid contribution 1.094 0.595 -0.996 1.594 sum -11.987 0.947 19.270 22.714 Atomic orbital electron populations 1.21800 0.90217 1.04255 1.03799 1.23223 0.97239 0.79723 1.01976 1.86494 1.24144 1.33065 1.83648 1.24174 0.80542 0.93080 0.70792 1.90604 1.60794 1.44404 1.46333 1.20722 0.96051 0.88119 0.99934 1.21864 1.02839 1.01089 0.93450 1.21489 0.91846 1.02033 0.97575 1.21716 1.00352 1.00457 0.93249 1.22271 0.96173 0.95825 0.91524 1.68853 1.10859 1.38217 1.02843 1.23705 0.99889 0.94900 0.92262 1.20041 0.93130 0.95406 0.91180 1.21381 1.16631 1.24438 0.94249 0.92241 1.25863 0.97290 0.98023 0.97403 1.70113 1.36352 1.44259 1.05430 0.85472 0.78927 0.78671 0.78386 1.18729 1.20637 1.20422 1.23719 0.89574 0.99780 0.98339 1.21461 0.94161 0.99854 0.98951 1.21638 1.02357 0.99457 0.90108 0.90613 0.91600 0.88496 0.92713 0.91224 0.88787 0.90416 0.91832 0.88525 0.90787 0.92617 0.91436 0.93717 0.93846 0.92975 0.95616 0.92840 0.92044 0.91873 0.94020 0.92157 0.89087 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 10.29 71.98 0.74 -1.10 16 2 C 0.05 1.03 6.19 71.98 0.45 1.47 16 3 O -0.36 -8.23 10.03 -51.47 -0.52 -8.74 16 4 C 0.47 12.26 5.04 71.23 0.36 12.62 16 5 O -0.53 -17.36 13.41 21.98 0.29 -17.06 16 6 C -0.05 -0.98 0.72 -52.93 -0.04 -1.01 16 7 C -0.14 -1.83 8.41 71.98 0.61 -1.23 16 8 C -0.09 -2.09 4.37 30.59 0.13 -1.96 16 9 C -0.12 -3.75 4.89 30.59 0.15 -3.60 16 10 C 0.05 1.74 1.55 44.92 0.07 1.81 16 11 N -0.49 -20.73 6.13 -902.37 -5.54 -26.26 16 12 C 0.02 1.04 6.82 83.58 0.57 1.61 16 13 C 0.02 1.14 3.77 -11.20 -0.04 1.10 16 14 C -0.53 -29.53 8.82 25.60 0.23 -29.31 16 15 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 16 C 0.01 0.75 5.46 84.66 0.46 1.21 16 17 N -0.92 -54.97 13.26 21.45 0.28 -54.68 16 18 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 C 0.01 0.65 6.13 83.58 0.51 1.16 16 23 C -0.11 -3.19 5.15 30.60 0.16 -3.04 16 24 C -0.10 -2.05 4.67 30.59 0.14 -1.90 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 29 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 0.95 8.11 -2.39 -0.02 0.93 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 35 H 0.06 1.78 7.34 -2.39 -0.02 1.77 16 36 H 0.07 2.48 5.52 -2.39 -0.01 2.46 16 37 H 0.04 1.52 7.55 -2.39 -0.02 1.51 16 38 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.05 2.46 7.57 -2.39 -0.02 2.44 16 40 H 0.03 1.53 8.11 -2.39 -0.02 1.51 16 41 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.06 2.60 7.79 -2.39 -0.02 2.58 16 43 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 44 H 0.04 1.40 7.22 -2.39 -0.02 1.39 16 45 H 0.06 1.89 7.85 -2.39 -0.02 1.87 16 46 H 0.09 1.66 8.11 -2.39 -0.02 1.64 16 47 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -67.40 364.92 1.96 -65.43 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.91 Total: 17.88 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 4.49 Total: -22.15 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -5.25 Total: -80.95 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.22 Total: -25.80 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -67.40 1.96 -65.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171948716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.983 kcal (2) G-P(sol) polarization free energy of solvation -67.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds