Wall clock time and date at job start Tue Mar 31 2020 07:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47064 * 2 1 4 4 C 1.34964 * 117.00011 * 179.97438 * 3 2 1 5 5 O 1.21713 * 120.00195 * 0.02562 * 4 3 2 6 6 C 1.41189 * 120.00068 * 180.02562 * 4 3 2 7 7 C 1.33700 * 118.25102 * 185.42269 * 6 4 3 8 8 N 1.36582 * 118.24783 * 0.60502 * 7 6 4 9 9 C 1.46505 * 119.99311 * 121.27363 * 8 7 6 10 10 H 1.08995 * 109.47179 * 39.11159 * 9 8 7 11 11 C 1.53006 * 109.46964 * 279.11200 * 9 8 7 12 12 C 1.52997 * 109.46962 * 159.11332 * 9 8 7 13 13 C 1.52999 * 109.47115 * 295.00165 * 12 9 8 14 14 C 1.50702 * 109.46741 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00063 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99795 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99792 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00042 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47574 * 89.99790 * 18 16 14 20 20 H 1.48501 * 109.46993 * 209.99816 * 18 16 14 21 21 H 1.48497 * 109.47210 * 329.99302 * 18 16 14 22 22 C 1.50123 * 123.50107 * 180.59389 * 7 6 4 23 23 C 1.52997 * 110.00902 * 342.70221 * 22 7 6 24 24 C 1.53049 * 108.74367 * 50.12561 * 23 22 7 25 25 C 1.50125 * 118.24784 * 5.39176 * 6 4 3 26 26 H 1.08996 * 109.47523 * 59.99779 * 1 2 3 27 27 H 1.09003 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47553 * 299.99787 * 1 2 3 29 29 H 1.09000 * 109.47145 * 240.00032 * 2 1 3 30 30 H 1.09005 * 109.47051 * 119.99854 * 2 1 3 31 31 H 0.96996 * 120.00282 * 301.27605 * 8 7 6 32 32 H 1.08996 * 109.47139 * 295.04875 * 11 9 8 33 33 H 1.09000 * 109.46824 * 55.04399 * 11 9 8 34 34 H 1.08999 * 109.46701 * 175.04638 * 11 9 8 35 35 H 1.09007 * 109.47179 * 55.00307 * 12 9 8 36 36 H 1.09001 * 109.47129 * 174.99456 * 12 9 8 37 37 H 1.08999 * 109.46743 * 299.99681 * 13 12 9 38 38 H 1.08993 * 109.47241 * 60.00063 * 13 12 9 39 39 H 0.97007 * 119.99673 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.36273 * 102.82949 * 22 7 6 41 41 H 1.08994 * 109.36481 * 222.56492 * 22 7 6 42 42 H 1.09001 * 109.61326 * 169.75810 * 23 22 7 43 43 H 1.09001 * 109.61762 * 290.29406 * 23 22 7 44 44 H 1.08992 * 109.65258 * 171.61512 * 24 23 22 45 45 H 1.08999 * 109.79054 * 51.12097 * 24 23 22 46 46 H 1.09000 * 109.36716 * 282.83618 * 25 6 4 47 47 H 1.09002 * 109.36352 * 42.57883 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3443 1.5241 0.0005 5 8 4.0858 0.5589 0.0005 6 6 3.8840 2.8288 0.0011 7 6 5.2093 2.9655 -0.1097 8 7 5.9679 1.8361 -0.2300 9 6 6.8239 1.6504 -1.4044 10 1 7.2815 2.6020 -1.6745 11 6 5.9806 1.1397 -2.5745 12 6 7.9185 0.6314 -1.0816 13 6 8.8371 1.1962 0.0037 14 6 9.9157 0.1927 0.3211 15 1 9.9429 -0.7535 -0.1989 16 6 10.8677 0.4825 1.2755 17 7 10.8348 1.6349 1.9083 18 14 12.2041 -0.7617 1.6695 19 1 13.3752 -0.5264 0.7873 20 1 12.6157 -0.6133 3.0886 21 1 11.6839 -2.1345 1.4460 22 6 5.9082 4.2941 -0.1091 23 6 4.9056 5.4132 -0.3975 24 6 3.7034 5.2488 0.5353 25 6 2.9389 3.9886 0.1254 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.9398 1.1570 0.4620 32 1 5.5944 0.1482 -2.3385 33 1 5.1483 1.8220 -2.7475 34 1 6.5983 1.0853 -3.4709 35 1 7.4616 -0.2924 -0.7264 36 1 8.5006 0.4266 -1.9801 37 1 9.2940 2.1199 -0.3516 38 1 8.2550 1.4009 0.9021 39 1 11.5048 1.8389 2.5795 40 1 6.3658 4.4614 0.8660 41 1 6.6822 4.2957 -0.8765 42 1 5.3751 6.3804 -0.2178 43 1 4.5756 5.3506 -1.4345 44 1 3.0506 6.1173 0.4485 45 1 4.0462 5.1501 1.5653 46 1 2.4482 4.1593 -0.8329 47 1 2.1868 3.7626 0.8813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:53 Heat of formation + Delta-G solvation = -89.916646 kcal Electronic energy + Delta-G solvation = -24954.656119 eV Core-core repulsion = 21522.978123 eV Total energy + Delta-G solvation = -3431.677996 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.68395 -38.70416 -36.50830 -36.07913 -33.34928 -32.08237 -31.91566 -30.78624 -29.34747 -27.96777 -25.10128 -24.41557 -23.40925 -22.27376 -21.25175 -20.96643 -19.82877 -18.47090 -17.40563 -16.52375 -16.45216 -16.25245 -15.22116 -14.80237 -14.49415 -14.18339 -14.01095 -13.89231 -13.74944 -13.30912 -13.06051 -12.73485 -12.57640 -12.51987 -12.45347 -12.21501 -11.90360 -11.83246 -11.53420 -11.50481 -11.23514 -10.95095 -10.88115 -10.79615 -10.58691 -10.49918 -10.33503 -10.30128 -9.94132 -9.79711 -9.28422 -9.03826 -8.87376 -8.33139 -7.38545 -5.98552 -4.00284 1.47508 3.15605 3.32405 3.37423 3.38717 3.42566 4.07698 4.47230 4.78691 4.90326 4.94280 4.96251 4.98983 5.22724 5.26855 5.33511 5.37376 5.44232 5.49163 5.62896 5.67401 5.71311 5.71952 5.79099 5.84715 5.88053 5.93616 6.02879 6.06908 6.10782 6.17297 6.29993 6.31070 6.36605 6.50272 6.59146 6.71917 6.84755 6.90645 7.13661 7.70038 7.80874 7.92793 8.02385 8.24378 8.42447 8.46758 9.06891 9.63559 11.12496 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.003987 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.621805 B = 7021.897381 C = 7946.817943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.361 6.361 4 C 0.505 3.495 5 O -0.516 6.516 6 C -0.277 4.277 7 C 0.282 3.718 8 N -0.733 5.733 9 C 0.156 3.844 10 H 0.064 0.936 11 C -0.158 4.158 12 C -0.118 4.118 13 C 0.026 3.974 14 C -0.520 4.520 15 H 0.053 0.947 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.108 4.108 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.048 4.048 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.412 0.588 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.013 0.987 38 H 0.019 0.981 39 H 0.259 0.741 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.949 5.701 -5.320 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.279 6.279 4 C 0.355 3.645 5 O -0.406 6.406 6 C -0.285 4.285 7 C 0.174 3.826 8 N -0.371 5.371 9 C 0.052 3.948 10 H 0.082 0.918 11 C -0.217 4.217 12 C -0.156 4.156 13 C -0.011 4.011 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.147 4.147 23 C -0.153 4.153 24 C -0.159 4.159 25 C -0.086 4.086 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.254 0.746 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.556 5.485 -5.339 20.073 hybrid contribution 0.816 -1.152 0.616 1.540 sum -17.740 4.333 -4.723 18.862 Atomic orbital electron populations 1.21780 0.93251 1.02497 1.03132 1.22442 0.94803 0.81882 1.02019 1.86197 1.25355 1.30888 1.85461 1.19689 0.79868 0.90630 0.74283 1.90820 1.59101 1.43256 1.47470 1.19001 0.93306 0.92295 1.23915 1.19347 0.88776 0.89297 0.85186 1.44540 1.47695 1.20578 1.24269 1.20973 0.90231 0.99256 0.84374 0.91785 1.22246 0.99694 1.01659 0.98089 1.21911 0.95533 0.97249 1.00899 1.19057 0.93225 0.95885 0.92919 1.21288 1.11312 1.02472 1.20796 0.92828 1.25008 0.97908 0.95342 0.96144 1.69966 1.35389 1.22210 1.25894 0.86626 0.82225 0.81862 0.77480 1.20718 1.21277 1.19928 1.20972 0.98463 0.91094 1.04127 1.21520 0.95822 0.97891 1.00067 1.21575 0.97054 0.97548 0.99709 1.19948 0.95912 0.91433 1.01294 0.91779 0.90754 0.91745 0.92073 0.92025 0.74552 0.92414 0.93795 0.92606 0.92724 0.92251 0.96911 0.96312 0.93118 0.88618 0.89579 0.91379 0.91559 0.91699 0.91680 0.91624 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.06 0.76 6.10 37.16 0.23 0.98 16 3 O -0.36 -5.12 9.33 -41.21 -0.38 -5.50 16 4 C 0.51 8.10 7.59 31.85 0.24 8.35 16 5 O -0.52 -9.50 13.26 -19.43 -0.26 -9.76 16 6 C -0.28 -4.01 5.67 -105.37 -0.60 -4.61 16 7 C 0.28 4.25 5.87 -82.35 -0.48 3.77 16 8 N -0.73 -12.73 2.73 -50.89 -0.14 -12.87 16 9 C 0.16 2.70 2.82 -67.93 -0.19 2.51 16 10 H 0.06 1.08 6.64 -51.93 -0.34 0.74 16 11 C -0.16 -2.46 9.44 37.16 0.35 -2.10 16 12 C -0.12 -2.44 4.67 -26.73 -0.12 -2.56 16 13 C 0.03 0.67 4.86 -27.88 -0.14 0.53 16 14 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 18 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.11 -1.40 5.89 -28.16 -0.17 -1.57 16 23 C -0.11 -1.17 5.96 -26.71 -0.16 -1.33 16 24 C -0.12 -1.20 5.98 -26.71 -0.16 -1.36 16 25 C -0.05 -0.55 5.33 -28.16 -0.15 -0.70 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 31 H 0.41 8.05 6.91 -40.82 -0.28 7.77 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.04 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.50 7.69 -51.93 -0.40 0.11 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.09 1.14 6.68 -51.93 -0.35 0.80 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.74 7.94 -51.93 -0.41 0.33 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -30.97 374.68 -9.30 -40.28 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -8.51 Total: 4.07 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.38 Total: -12.58 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.60 Total: -39.04 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.64 Total: -15.26 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.97 -9.30 -40.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.640 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds