Wall clock time and date at job start Tue Mar 31 2020 07:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47064 * 2 1 4 4 C 1.34964 * 117.00011 * 179.97438 * 3 2 1 5 5 O 1.21713 * 120.00195 * 0.02562 * 4 3 2 6 6 C 1.41189 * 120.00068 * 180.02562 * 4 3 2 7 7 C 1.33700 * 118.25102 * 185.42269 * 6 4 3 8 8 N 1.36582 * 118.24783 * 0.60502 * 7 6 4 9 9 C 1.46505 * 119.99311 * 121.27363 * 8 7 6 10 10 H 1.08995 * 109.47179 * 39.11159 * 9 8 7 11 11 C 1.53006 * 109.46964 * 279.11200 * 9 8 7 12 12 C 1.52997 * 109.46962 * 159.11332 * 9 8 7 13 13 C 1.52999 * 109.47115 * 295.00165 * 12 9 8 14 14 C 1.50702 * 109.46741 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00063 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99795 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99792 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00042 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47574 * 89.99790 * 18 16 14 20 20 H 1.48501 * 109.46993 * 209.99816 * 18 16 14 21 21 H 1.48497 * 109.47210 * 329.99302 * 18 16 14 22 22 C 1.50123 * 123.50107 * 180.59389 * 7 6 4 23 23 C 1.52997 * 110.00902 * 342.70221 * 22 7 6 24 24 C 1.53049 * 108.74367 * 50.12561 * 23 22 7 25 25 C 1.50125 * 118.24784 * 5.39176 * 6 4 3 26 26 H 1.08996 * 109.47523 * 59.99779 * 1 2 3 27 27 H 1.09003 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47553 * 299.99787 * 1 2 3 29 29 H 1.09000 * 109.47145 * 240.00032 * 2 1 3 30 30 H 1.09005 * 109.47051 * 119.99854 * 2 1 3 31 31 H 0.96996 * 120.00282 * 301.27605 * 8 7 6 32 32 H 1.08996 * 109.47139 * 295.04875 * 11 9 8 33 33 H 1.09000 * 109.46824 * 55.04399 * 11 9 8 34 34 H 1.08999 * 109.46701 * 175.04638 * 11 9 8 35 35 H 1.09007 * 109.47179 * 55.00307 * 12 9 8 36 36 H 1.09001 * 109.47129 * 174.99456 * 12 9 8 37 37 H 1.08999 * 109.46743 * 299.99681 * 13 12 9 38 38 H 1.08993 * 109.47241 * 60.00063 * 13 12 9 39 39 H 0.97007 * 119.99673 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.36273 * 102.82949 * 22 7 6 41 41 H 1.08994 * 109.36481 * 222.56492 * 22 7 6 42 42 H 1.09001 * 109.61326 * 169.75810 * 23 22 7 43 43 H 1.09001 * 109.61762 * 290.29406 * 23 22 7 44 44 H 1.08992 * 109.65258 * 171.61512 * 24 23 22 45 45 H 1.08999 * 109.79054 * 51.12097 * 24 23 22 46 46 H 1.09000 * 109.36716 * 282.83618 * 25 6 4 47 47 H 1.09002 * 109.36352 * 42.57883 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3443 1.5241 0.0005 5 8 4.0858 0.5589 0.0005 6 6 3.8840 2.8288 0.0011 7 6 5.2093 2.9655 -0.1097 8 7 5.9679 1.8361 -0.2300 9 6 6.8239 1.6504 -1.4044 10 1 7.2815 2.6020 -1.6745 11 6 5.9806 1.1397 -2.5745 12 6 7.9185 0.6314 -1.0816 13 6 8.8371 1.1962 0.0037 14 6 9.9157 0.1927 0.3211 15 1 9.9429 -0.7535 -0.1989 16 6 10.8677 0.4825 1.2755 17 7 10.8348 1.6349 1.9083 18 14 12.2041 -0.7617 1.6695 19 1 13.3752 -0.5264 0.7873 20 1 12.6157 -0.6133 3.0886 21 1 11.6839 -2.1345 1.4460 22 6 5.9082 4.2941 -0.1091 23 6 4.9056 5.4132 -0.3975 24 6 3.7034 5.2488 0.5353 25 6 2.9389 3.9886 0.1254 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.9398 1.1570 0.4620 32 1 5.5944 0.1482 -2.3385 33 1 5.1483 1.8220 -2.7475 34 1 6.5983 1.0853 -3.4709 35 1 7.4616 -0.2924 -0.7264 36 1 8.5006 0.4266 -1.9801 37 1 9.2940 2.1199 -0.3516 38 1 8.2550 1.4009 0.9021 39 1 11.5048 1.8389 2.5795 40 1 6.3658 4.4614 0.8660 41 1 6.6822 4.2957 -0.8765 42 1 5.3751 6.3804 -0.2178 43 1 4.5756 5.3506 -1.4345 44 1 3.0506 6.1173 0.4485 45 1 4.0462 5.1501 1.5653 46 1 2.4482 4.1593 -0.8329 47 1 2.1868 3.7626 0.8813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:52 Heat of formation + Delta-G solvation = -105.083490 kcal Electronic energy + Delta-G solvation = -24955.313803 eV Core-core repulsion = 21522.978123 eV Total energy + Delta-G solvation = -3432.335680 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.88303 -39.85968 -37.72740 -37.38717 -35.27031 -33.54016 -32.97377 -31.74111 -31.09175 -29.11437 -27.03171 -25.42808 -24.48523 -23.49600 -22.85677 -21.99306 -21.33853 -19.58740 -18.62654 -18.41729 -17.71852 -17.56271 -16.60989 -16.51908 -15.83236 -15.26768 -15.15032 -14.91046 -14.88233 -14.59289 -14.34639 -14.30653 -13.99021 -13.70290 -13.51573 -13.33444 -13.20931 -13.16462 -12.87946 -12.82170 -12.72140 -12.43730 -12.39484 -11.99614 -11.93032 -11.71060 -11.62652 -11.46358 -11.36796 -11.36116 -11.15721 -10.90906 -10.54942 -10.09383 -8.65738 -8.20203 -6.30447 0.25901 1.37510 1.38599 1.49547 2.06371 2.16673 2.39573 2.78205 3.12741 3.79710 3.98375 4.02345 4.04078 4.09592 4.14817 4.25472 4.30737 4.36619 4.38670 4.40809 4.56701 4.68976 4.71199 4.82455 4.87223 4.90614 4.93610 4.94240 5.00949 5.06851 5.09557 5.15654 5.20124 5.22825 5.30818 5.37124 5.38775 5.51712 5.54470 5.63600 5.68830 5.78576 5.86666 6.26113 6.58523 6.85779 6.95662 7.08250 7.38118 8.90832 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.003987 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.621805 B = 7021.897381 C = 7946.817943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.056 3.944 3 O -0.358 6.358 4 C 0.498 3.502 5 O -0.546 6.546 6 C -0.273 4.273 7 C 0.267 3.733 8 N -0.745 5.745 9 C 0.163 3.837 10 H 0.070 0.930 11 C -0.145 4.145 12 C -0.104 4.104 13 C 0.037 3.963 14 C -0.546 4.546 15 H 0.054 0.946 16 C 0.002 3.998 17 N -0.929 5.929 18 Si 0.960 3.040 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.106 4.106 23 C -0.108 4.108 24 C -0.117 4.117 25 C -0.046 4.046 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.397 0.603 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.067 0.933 37 H -0.008 1.008 38 H -0.006 1.006 39 H 0.262 0.738 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.078 0.922 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.030 6.238 -6.070 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 O -0.276 6.276 4 C 0.349 3.651 5 O -0.439 6.439 6 C -0.281 4.281 7 C 0.161 3.839 8 N -0.382 5.382 9 C 0.058 3.942 10 H 0.088 0.912 11 C -0.204 4.204 12 C -0.142 4.142 13 C 0.000 4.000 14 C -0.584 4.584 15 H 0.073 0.927 16 C -0.196 4.196 17 N -0.569 5.569 18 Si 0.785 3.215 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.192 1.192 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.154 4.154 25 C -0.084 4.084 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.237 0.763 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.010 0.990 38 H 0.012 0.988 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.671 6.046 -6.108 21.467 hybrid contribution 1.091 -1.356 0.880 1.951 sum -18.580 4.690 -5.227 19.863 Atomic orbital electron populations 1.21778 0.90205 1.04076 1.03673 1.22696 0.97154 0.80777 1.01272 1.86199 1.24240 1.32175 1.84975 1.20091 0.80358 0.90931 0.73689 1.90811 1.59896 1.44347 1.48828 1.19351 0.93571 0.92798 1.22337 1.19701 0.89011 0.89350 0.85833 1.44512 1.48382 1.21194 1.24129 1.20847 0.89709 0.98388 0.85207 0.91243 1.22105 0.99741 1.00712 0.97797 1.21705 0.95724 0.97407 0.99374 1.18873 0.93093 0.94667 0.93359 1.21734 1.12364 1.03083 1.21183 0.92745 1.25910 1.00391 0.97350 0.95905 1.70090 1.36381 1.24041 1.26396 0.85519 0.79192 0.79329 0.77440 1.19572 1.20759 1.19218 1.20988 0.99020 0.91146 1.03324 1.21516 0.95161 0.97308 1.00601 1.21573 0.97111 0.97650 0.99115 1.20019 0.95384 0.90891 1.02068 0.91131 0.88671 0.91237 0.92774 0.92934 0.76264 0.93913 0.93098 0.90725 0.93901 0.91485 0.98986 0.98761 0.92880 0.89725 0.90165 0.89607 0.90724 0.89021 0.92380 0.90384 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.06 1.31 6.10 71.98 0.44 1.75 16 3 O -0.36 -9.98 9.33 -58.81 -0.55 -10.53 16 4 C 0.50 16.09 7.59 68.55 0.52 16.61 16 5 O -0.55 -20.79 13.26 19.14 0.25 -20.54 16 6 C -0.27 -7.79 5.67 -20.35 -0.12 -7.90 16 7 C 0.27 8.14 5.87 40.61 0.24 8.38 16 8 N -0.74 -26.81 2.73 -314.92 -0.86 -27.66 16 9 C 0.16 5.73 2.82 44.99 0.13 5.86 16 10 H 0.07 2.36 6.64 -2.39 -0.02 2.35 16 11 C -0.14 -4.41 9.44 71.98 0.68 -3.73 16 12 C -0.10 -4.41 4.67 30.59 0.14 -4.27 16 13 C 0.04 1.97 4.86 29.85 0.15 2.12 16 14 C -0.55 -31.72 9.11 25.60 0.23 -31.49 16 15 H 0.05 3.08 7.74 -2.91 -0.02 3.05 16 16 C 0.00 0.14 5.46 84.65 0.46 0.60 16 17 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 18 Si 0.96 45.17 29.54 68.60 2.03 47.19 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 C -0.11 -2.74 5.89 29.67 0.17 -2.56 16 23 C -0.11 -1.97 5.96 30.61 0.18 -1.79 16 24 C -0.12 -2.04 5.98 30.61 0.18 -1.86 16 25 C -0.05 -0.97 5.33 29.67 0.16 -0.81 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 30 H 0.05 1.32 8.13 -2.38 -0.02 1.30 16 31 H 0.40 16.45 6.91 -92.71 -0.64 15.81 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.47 8.09 -2.39 -0.02 1.45 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.04 1.89 8.14 -2.38 -0.02 1.88 16 36 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 37 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H -0.01 -0.34 7.69 -2.39 -0.02 -0.36 16 39 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 40 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 41 H 0.08 2.13 6.68 -2.39 -0.02 2.12 16 42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 44 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.06 1.11 8.12 -2.39 -0.02 1.09 16 46 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.07 1.40 7.94 -2.39 -0.02 1.38 16 Total: -1.00 -67.87 374.68 5.76 -62.11 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.29 Total: 26.51 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 4.31 Total: -20.51 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -0.57 Total: -84.24 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.29 Total: -31.07 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -67.87 5.76 -62.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.969 kcal (2) G-P(sol) polarization free energy of solvation -67.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds