Wall clock time and date at job start Tue Mar 31 2020 07:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.46883 * 2 1 4 4 C 1.34970 * 117.00234 * 180.02562 * 3 2 1 5 5 O 1.21709 * 119.99847 * 359.97438 * 4 3 2 6 6 C 1.41185 * 120.00333 * 180.02562 * 4 3 2 7 7 C 1.33692 * 118.25294 * 185.96793 * 6 4 3 8 8 N 1.36587 * 118.24803 * 0.66421 * 7 6 4 9 9 C 1.46497 * 119.99609 * 237.62846 * 8 7 6 10 10 H 1.08998 * 109.47264 * 320.63065 * 9 8 7 11 11 C 1.53001 * 109.47037 * 80.63002 * 9 8 7 12 12 C 1.53000 * 109.46843 * 200.62489 * 9 8 7 13 13 C 1.52998 * 109.46862 * 65.00338 * 12 9 8 14 14 C 1.50703 * 109.47068 * 179.97438 * 13 12 9 15 15 H 1.07994 * 119.99927 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99635 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00382 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99357 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47422 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.46879 * 120.00287 * 18 16 14 21 21 H 1.48507 * 109.47065 * 239.99605 * 18 16 14 22 22 C 1.50123 * 123.50325 * 180.37539 * 7 6 4 23 23 C 1.53000 * 110.11699 * 342.88220 * 22 7 6 24 24 C 1.53333 * 108.58647 * 50.09079 * 23 22 7 25 25 C 1.50125 * 118.24687 * 6.21354 * 6 4 3 26 26 H 1.09002 * 109.46964 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47398 * 299.99761 * 1 2 3 28 28 H 1.09003 * 109.47687 * 60.00038 * 1 2 3 29 29 H 1.09001 * 109.47398 * 240.00239 * 2 1 3 30 30 H 1.08994 * 109.47100 * 119.99886 * 2 1 3 31 31 H 0.97004 * 119.99683 * 57.62769 * 8 7 6 32 32 H 1.08993 * 109.47297 * 179.97438 * 11 9 8 33 33 H 1.08999 * 109.46963 * 299.99903 * 11 9 8 34 34 H 1.09001 * 109.47410 * 59.99560 * 11 9 8 35 35 H 1.08994 * 109.47306 * 305.00336 * 12 9 8 36 36 H 1.08997 * 109.47082 * 185.00220 * 12 9 8 37 37 H 1.09004 * 109.47137 * 59.99725 * 13 12 9 38 38 H 1.08997 * 109.47176 * 299.99824 * 13 12 9 39 39 H 0.97001 * 119.99598 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.36328 * 103.07744 * 22 7 6 41 41 H 1.09003 * 109.36882 * 222.81756 * 22 7 6 42 42 H 1.09000 * 109.61828 * 169.81883 * 23 22 7 43 43 H 1.08998 * 109.61592 * 290.18359 * 23 22 7 44 44 H 1.08997 * 109.62001 * 51.12219 * 24 23 22 45 45 H 1.08998 * 109.61311 * 171.48080 * 24 23 22 46 46 H 1.09000 * 109.49500 * 42.49595 * 25 6 4 47 47 H 1.09003 * 109.06429 * 282.86762 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3443 1.5243 -0.0005 5 8 4.0858 0.5591 -0.0005 6 6 3.8839 2.8289 0.0000 7 6 5.2081 2.9662 -0.1230 8 7 5.9654 1.8373 -0.2563 9 6 7.0375 1.5572 0.7019 10 1 7.5514 2.4849 0.9535 11 6 6.4406 0.9445 1.9704 12 6 8.0328 0.5750 0.0808 13 6 8.7213 1.2349 -1.1156 14 6 9.7021 0.2677 -1.7270 15 1 9.8225 -0.7187 -1.3043 16 6 10.4463 0.6427 -2.8255 17 7 10.3007 1.8445 -3.3394 18 14 11.6614 -0.5565 -3.5837 19 1 11.6370 -1.8325 -2.8245 20 1 11.2863 -0.8138 -4.9974 21 1 13.0274 0.0238 -3.5319 22 6 5.9065 4.2950 -0.1287 23 6 4.9021 5.4162 -0.4030 24 6 3.7100 5.2475 0.5465 25 6 2.9406 3.9879 0.1443 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 5.7932 1.2211 -0.9855 32 1 7.2383 0.7357 2.6832 33 1 5.7315 1.6442 2.4128 34 1 5.9266 0.0168 1.7188 35 1 7.5029 -0.3175 -0.2518 36 1 8.7811 0.2978 0.8232 37 1 9.2511 2.1275 -0.7830 38 1 7.9730 1.5120 -1.8581 39 1 10.8246 2.1083 -4.1119 40 1 6.3767 4.4603 0.8406 41 1 6.6704 4.2986 -0.9062 42 1 5.3754 6.3824 -0.2282 43 1 4.5613 5.3573 -1.4367 44 1 4.0693 5.1456 1.5704 45 1 3.0575 6.1175 0.4725 46 1 2.1974 3.7591 0.9080 47 1 2.4390 4.1594 -0.8082 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:56 Heat of formation + Delta-G solvation = -90.390628 kcal Electronic energy + Delta-G solvation = -24953.217516 eV Core-core repulsion = 21521.518967 eV Total energy + Delta-G solvation = -3431.698549 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.66948 -38.68545 -36.49609 -36.05414 -33.34946 -32.07714 -31.91033 -30.78113 -29.34334 -27.93285 -25.09534 -24.41668 -23.39544 -22.24792 -21.28111 -21.00489 -19.79109 -18.36227 -17.34026 -16.60608 -16.44019 -16.25249 -15.30108 -14.86389 -14.50606 -14.11272 -14.01602 -13.89010 -13.53825 -13.29959 -13.04496 -12.74198 -12.58710 -12.51715 -12.46365 -12.21478 -11.90723 -11.81857 -11.54123 -11.50672 -11.21587 -10.95818 -10.85028 -10.77846 -10.56955 -10.48037 -10.30113 -10.28853 -9.98633 -9.79584 -9.28413 -9.03812 -8.88025 -8.33826 -7.35142 -5.99077 -4.00703 1.47762 3.16438 3.31144 3.37050 3.38779 3.43259 4.06998 4.46948 4.78954 4.90679 4.95089 4.96567 4.99408 5.23528 5.29047 5.34148 5.37011 5.46601 5.50588 5.59490 5.68794 5.71755 5.74640 5.84748 5.85870 5.89074 5.92816 6.02897 6.08320 6.12542 6.18287 6.30738 6.32991 6.36954 6.55298 6.61138 6.72219 6.85196 6.93405 7.14153 7.70089 7.80518 7.92956 8.02001 8.26146 8.38671 8.45748 9.06772 9.63267 11.12004 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.004001 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.038583 B = 6997.404674 C = 7900.593844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.362 6.362 4 C 0.504 3.496 5 O -0.512 6.512 6 C -0.278 4.278 7 C 0.283 3.717 8 N -0.732 5.732 9 C 0.160 3.840 10 H 0.063 0.937 11 C -0.157 4.157 12 C -0.118 4.118 13 C 0.026 3.974 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.049 4.049 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.408 0.592 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.013 0.987 38 H 0.018 0.982 39 H 0.259 0.741 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.510 5.084 8.885 20.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.280 6.280 4 C 0.354 3.646 5 O -0.403 6.403 6 C -0.286 4.286 7 C 0.175 3.825 8 N -0.369 5.369 9 C 0.055 3.945 10 H 0.081 0.919 11 C -0.216 4.216 12 C -0.156 4.156 13 C -0.011 4.011 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.147 4.147 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.086 4.086 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.249 0.751 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.036 0.964 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.105 4.870 8.886 19.881 hybrid contribution 0.649 -1.081 -0.851 1.522 sum -16.456 3.789 8.035 18.701 Atomic orbital electron populations 1.21780 0.93269 1.02490 1.03130 1.22436 0.94801 0.81900 1.02001 1.86207 1.25475 1.30892 1.85420 1.19712 0.79878 0.90723 0.74265 1.90871 1.59130 1.43080 1.47203 1.18986 0.94709 0.92251 1.22679 1.19333 0.89317 0.89101 0.84734 1.44372 1.36813 1.23510 1.32188 1.20927 0.87184 0.98450 0.87915 0.91913 1.22239 1.00222 1.01542 0.97553 1.21908 0.96393 0.97606 0.99696 1.19066 0.94828 0.95554 0.91686 1.21330 1.21650 1.00006 1.12809 0.92769 1.25011 0.97226 0.95183 0.96998 1.69972 1.41316 1.18583 1.23590 0.86579 0.81120 0.81429 0.79124 1.19778 1.21077 1.21059 1.20957 0.98792 0.91177 1.03787 1.21560 0.95833 0.97722 1.00192 1.21599 0.97121 0.97517 0.99477 1.19936 0.95924 0.91513 1.01275 0.90765 0.91806 0.91726 0.91997 0.92116 0.75123 0.92798 0.93971 0.92039 0.92746 0.92260 0.96894 0.96362 0.93172 0.89735 0.88647 0.91321 0.91420 0.91807 0.91732 0.91248 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.06 0.76 6.10 37.16 0.23 0.98 16 3 O -0.36 -5.12 9.34 -41.23 -0.39 -5.51 16 4 C 0.50 8.04 7.58 31.85 0.24 8.29 16 5 O -0.51 -9.32 12.47 -19.43 -0.24 -9.56 16 6 C -0.28 -4.01 5.67 -105.38 -0.60 -4.61 16 7 C 0.28 4.25 5.91 -82.35 -0.49 3.77 16 8 N -0.73 -12.65 2.57 -50.90 -0.13 -12.78 16 9 C 0.16 2.77 2.82 -67.93 -0.19 2.58 16 10 H 0.06 1.07 7.36 -51.93 -0.38 0.68 16 11 C -0.16 -2.47 9.01 37.16 0.33 -2.13 16 12 C -0.12 -2.44 4.67 -26.73 -0.12 -2.56 16 13 C 0.03 0.65 4.86 -27.88 -0.14 0.52 16 14 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 18 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.11 -1.40 5.31 -28.16 -0.15 -1.55 16 23 C -0.12 -1.21 5.98 -26.56 -0.16 -1.37 16 24 C -0.12 -1.17 5.99 -26.57 -0.16 -1.33 16 25 C -0.05 -0.56 5.33 -28.17 -0.15 -0.71 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 31 H 0.41 7.87 7.24 -40.82 -0.30 7.57 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 1.05 7.63 -51.93 -0.40 0.65 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.49 7.69 -51.93 -0.40 0.09 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 41 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 44 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.77 7.95 -51.93 -0.41 0.36 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 374.64 15.07 5.65 5.65 Total: -1.00 -30.85 374.64 -9.38 -40.23 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -8.60 Total: 3.82 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -1.38 Total: -12.58 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.61 Total: -38.89 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.63 Total: -15.07 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.85 -9.38 -40.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.164 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds