Wall clock time and date at job start Tue Mar 31 2020 07:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.46883 * 2 1 4 4 C 1.34970 * 117.00234 * 180.02562 * 3 2 1 5 5 O 1.21709 * 119.99847 * 359.97438 * 4 3 2 6 6 C 1.41185 * 120.00333 * 180.02562 * 4 3 2 7 7 C 1.33692 * 118.25294 * 185.96793 * 6 4 3 8 8 N 1.36587 * 118.24803 * 0.66421 * 7 6 4 9 9 C 1.46497 * 119.99609 * 237.62846 * 8 7 6 10 10 H 1.08998 * 109.47264 * 320.63065 * 9 8 7 11 11 C 1.53001 * 109.47037 * 80.63002 * 9 8 7 12 12 C 1.53000 * 109.46843 * 200.62489 * 9 8 7 13 13 C 1.52998 * 109.46862 * 65.00338 * 12 9 8 14 14 C 1.50703 * 109.47068 * 179.97438 * 13 12 9 15 15 H 1.07994 * 119.99927 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99635 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00382 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99357 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47422 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.46879 * 120.00287 * 18 16 14 21 21 H 1.48507 * 109.47065 * 239.99605 * 18 16 14 22 22 C 1.50123 * 123.50325 * 180.37539 * 7 6 4 23 23 C 1.53000 * 110.11699 * 342.88220 * 22 7 6 24 24 C 1.53333 * 108.58647 * 50.09079 * 23 22 7 25 25 C 1.50125 * 118.24687 * 6.21354 * 6 4 3 26 26 H 1.09002 * 109.46964 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47398 * 299.99761 * 1 2 3 28 28 H 1.09003 * 109.47687 * 60.00038 * 1 2 3 29 29 H 1.09001 * 109.47398 * 240.00239 * 2 1 3 30 30 H 1.08994 * 109.47100 * 119.99886 * 2 1 3 31 31 H 0.97004 * 119.99683 * 57.62769 * 8 7 6 32 32 H 1.08993 * 109.47297 * 179.97438 * 11 9 8 33 33 H 1.08999 * 109.46963 * 299.99903 * 11 9 8 34 34 H 1.09001 * 109.47410 * 59.99560 * 11 9 8 35 35 H 1.08994 * 109.47306 * 305.00336 * 12 9 8 36 36 H 1.08997 * 109.47082 * 185.00220 * 12 9 8 37 37 H 1.09004 * 109.47137 * 59.99725 * 13 12 9 38 38 H 1.08997 * 109.47176 * 299.99824 * 13 12 9 39 39 H 0.97001 * 119.99598 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.36328 * 103.07744 * 22 7 6 41 41 H 1.09003 * 109.36882 * 222.81756 * 22 7 6 42 42 H 1.09000 * 109.61828 * 169.81883 * 23 22 7 43 43 H 1.08998 * 109.61592 * 290.18359 * 23 22 7 44 44 H 1.08997 * 109.62001 * 51.12219 * 24 23 22 45 45 H 1.08998 * 109.61311 * 171.48080 * 24 23 22 46 46 H 1.09000 * 109.49500 * 42.49595 * 25 6 4 47 47 H 1.09003 * 109.06429 * 282.86762 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3443 1.5243 -0.0005 5 8 4.0858 0.5591 -0.0005 6 6 3.8839 2.8289 0.0000 7 6 5.2081 2.9662 -0.1230 8 7 5.9654 1.8373 -0.2563 9 6 7.0375 1.5572 0.7019 10 1 7.5514 2.4849 0.9535 11 6 6.4406 0.9445 1.9704 12 6 8.0328 0.5750 0.0808 13 6 8.7213 1.2349 -1.1156 14 6 9.7021 0.2677 -1.7270 15 1 9.8225 -0.7187 -1.3043 16 6 10.4463 0.6427 -2.8255 17 7 10.3007 1.8445 -3.3394 18 14 11.6614 -0.5565 -3.5837 19 1 11.6370 -1.8325 -2.8245 20 1 11.2863 -0.8138 -4.9974 21 1 13.0274 0.0238 -3.5319 22 6 5.9065 4.2950 -0.1287 23 6 4.9021 5.4162 -0.4030 24 6 3.7100 5.2475 0.5465 25 6 2.9406 3.9879 0.1443 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 5.7932 1.2211 -0.9855 32 1 7.2383 0.7357 2.6832 33 1 5.7315 1.6442 2.4128 34 1 5.9266 0.0168 1.7188 35 1 7.5029 -0.3175 -0.2518 36 1 8.7811 0.2978 0.8232 37 1 9.2511 2.1275 -0.7830 38 1 7.9730 1.5120 -1.8581 39 1 10.8246 2.1083 -4.1119 40 1 6.3767 4.4603 0.8406 41 1 6.6704 4.2986 -0.9062 42 1 5.3754 6.3824 -0.2282 43 1 4.5613 5.3573 -1.4367 44 1 4.0693 5.1456 1.5704 45 1 3.0575 6.1175 0.4725 46 1 2.1974 3.7591 0.9080 47 1 2.4390 4.1594 -0.8082 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:55 Heat of formation + Delta-G solvation = -105.392639 kcal Electronic energy + Delta-G solvation = -24953.868052 eV Core-core repulsion = 21521.518967 eV Total energy + Delta-G solvation = -3432.349085 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86252 -39.83990 -37.71986 -37.35569 -35.26750 -33.53755 -32.96596 -31.73534 -31.09091 -29.08031 -27.02735 -25.43617 -24.46420 -23.48160 -22.85391 -22.06064 -21.30369 -19.45968 -18.58164 -18.42924 -17.72964 -17.58380 -16.63594 -16.52393 -15.98027 -15.26049 -15.03609 -14.94021 -14.66963 -14.51447 -14.45707 -14.29379 -13.97811 -13.68831 -13.52245 -13.35785 -13.20400 -13.13358 -12.89395 -12.83008 -12.74828 -12.42925 -12.38337 -11.98609 -11.87112 -11.70297 -11.61263 -11.44921 -11.35980 -11.35573 -11.18524 -10.91201 -10.55559 -10.10590 -8.62049 -8.20364 -6.30505 0.26718 1.37090 1.37753 1.50698 2.07526 2.17102 2.39491 2.77710 3.12648 3.79821 3.99531 4.02804 4.06035 4.09601 4.15142 4.27245 4.34183 4.37103 4.38849 4.42350 4.57061 4.65352 4.73620 4.84831 4.87774 4.92259 4.93668 4.93993 5.02026 5.07590 5.11114 5.15446 5.18364 5.24065 5.31663 5.38521 5.41325 5.52174 5.53655 5.64018 5.70468 5.78969 5.86750 6.26263 6.58081 6.85782 6.95662 7.07756 7.38156 8.90840 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.004001 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.038583 B = 6997.404674 C = 7900.593844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.056 3.944 3 O -0.360 6.360 4 C 0.497 3.503 5 O -0.540 6.540 6 C -0.274 4.274 7 C 0.268 3.732 8 N -0.744 5.744 9 C 0.167 3.833 10 H 0.068 0.932 11 C -0.143 4.143 12 C -0.104 4.104 13 C 0.037 3.963 14 C -0.544 4.544 15 H 0.054 0.946 16 C 0.002 3.998 17 N -0.929 5.929 18 Si 0.960 3.040 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.276 1.276 22 C -0.105 4.105 23 C -0.111 4.111 24 C -0.113 4.113 25 C -0.047 4.047 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.394 0.606 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.066 0.934 37 H -0.008 1.008 38 H -0.006 1.006 39 H 0.262 0.738 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.442 5.555 9.740 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.348 3.652 5 O -0.433 6.433 6 C -0.282 4.282 7 C 0.162 3.838 8 N -0.380 5.380 9 C 0.063 3.937 10 H 0.086 0.914 11 C -0.202 4.202 12 C -0.142 4.142 13 C 0.000 4.000 14 C -0.583 4.583 15 H 0.072 0.928 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.785 3.215 19 H -0.189 1.189 20 H -0.206 1.206 21 H -0.201 1.201 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.150 4.150 25 C -0.085 4.085 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.232 0.768 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.010 0.990 38 H 0.013 0.987 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.068 5.364 9.761 21.225 hybrid contribution 0.876 -1.262 -1.141 1.913 sum -17.193 4.102 8.620 19.665 Atomic orbital electron populations 1.21778 0.90284 1.04057 1.03639 1.22686 0.97108 0.80800 1.01278 1.86208 1.24410 1.32180 1.84958 1.20106 0.80358 0.91035 0.73721 1.90860 1.59888 1.44115 1.48462 1.19324 0.94918 0.92774 1.21158 1.19685 0.89626 0.89129 0.85333 1.44335 1.37238 1.24245 1.32153 1.20789 0.86793 0.97736 0.88408 0.91411 1.22092 1.00607 1.00653 0.96835 1.21702 0.96911 0.97549 0.98053 1.18881 0.93794 0.94559 0.92781 1.21761 1.22506 1.00530 1.13455 0.92758 1.25906 0.99153 0.97008 0.97479 1.70093 1.42335 1.20387 1.24099 0.85474 0.78653 0.79219 0.78148 1.18929 1.20551 1.20150 1.20955 0.98874 0.91062 1.03486 1.21567 0.95633 0.97434 1.00224 1.21581 0.96786 0.97389 0.99227 1.20012 0.95542 0.91149 1.01796 0.88683 0.91064 0.91377 0.93045 0.92621 0.76778 0.91085 0.93159 0.93692 0.93869 0.91567 0.99004 0.98731 0.92884 0.88704 0.91019 0.89355 0.91906 0.91405 0.89221 0.90579 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.06 1.31 6.10 71.98 0.44 1.75 16 3 O -0.36 -10.03 9.34 -58.88 -0.55 -10.58 16 4 C 0.50 15.95 7.58 68.54 0.52 16.47 16 5 O -0.54 -20.26 12.47 19.15 0.24 -20.02 16 6 C -0.27 -7.79 5.67 -20.35 -0.12 -7.91 16 7 C 0.27 8.13 5.91 40.61 0.24 8.37 16 8 N -0.74 -26.61 2.57 -314.94 -0.81 -27.42 16 9 C 0.17 5.90 2.82 44.99 0.13 6.02 16 10 H 0.07 2.32 7.36 -2.39 -0.02 2.30 16 11 C -0.14 -4.43 9.01 71.98 0.65 -3.78 16 12 C -0.10 -4.41 4.67 30.59 0.14 -4.27 16 13 C 0.04 1.95 4.86 29.85 0.15 2.10 16 14 C -0.54 -31.60 9.11 25.60 0.23 -31.37 16 15 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 16 C 0.00 0.14 5.46 84.66 0.46 0.60 16 17 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 18 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 C -0.11 -2.70 5.31 29.67 0.16 -2.54 16 23 C -0.11 -2.13 5.98 30.71 0.18 -1.95 16 24 C -0.11 -1.88 5.99 30.70 0.18 -1.70 16 25 C -0.05 -1.00 5.33 29.66 0.16 -0.84 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 29 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 30 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 31 H 0.39 16.07 7.24 -92.71 -0.67 15.40 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.04 1.53 7.63 -2.39 -0.02 1.52 16 35 H 0.04 1.90 8.14 -2.39 -0.02 1.89 16 36 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H -0.01 -0.33 7.69 -2.39 -0.02 -0.34 16 39 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.09 2.20 7.93 -2.39 -0.02 2.18 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 1.27 8.12 -2.39 -0.02 1.26 16 44 H 0.07 1.12 8.11 -2.39 -0.02 1.10 16 45 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 1.52 7.95 -2.39 -0.02 1.51 16 47 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -67.53 374.64 5.71 -61.82 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.25 Total: 25.97 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 4.26 Total: -20.46 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -0.52 Total: -83.87 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.31 Total: -30.60 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -67.53 5.71 -61.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.577 kcal (2) G-P(sol) polarization free energy of solvation -67.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds