Wall clock time and date at job start Tue Mar 31 2020 07:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34239 * 117.00155 * 2 1 4 4 O 1.20824 * 119.99668 * 0.02562 * 3 2 1 5 5 C 1.51429 * 120.00009 * 180.02562 * 3 2 1 6 6 H 1.11953 * 104.85858 * 58.90072 * 5 3 2 7 7 C 1.51172 * 109.75137 * 305.17964 * 5 3 2 8 8 C 1.52828 * 114.35795 * 248.93458 * 7 5 3 9 9 H 1.09669 * 112.81904 * 186.86504 * 8 7 5 10 10 C 1.55229 * 106.91346 * 310.88789 * 8 7 5 11 11 C 1.55580 * 99.49491 * 77.48699 * 10 8 7 12 12 H 1.10134 * 110.70102 * 163.07488 * 11 10 8 13 13 C 1.50981 * 110.00131 * 172.82320 * 5 3 2 14 14 N 1.47151 * 103.08596 * 43.69627 * 11 10 8 15 15 C 1.45228 * 115.63668 * 196.36129 * 14 11 10 16 16 H 1.09001 * 109.47288 * 40.32391 * 15 14 11 17 17 C 1.53011 * 109.46745 * 160.31906 * 15 14 11 18 18 C 1.53005 * 109.47464 * 280.31647 * 15 14 11 19 19 C 1.52996 * 109.46525 * 67.29458 * 18 15 14 20 20 C 1.50699 * 109.46962 * 173.81955 * 19 18 15 21 21 H 1.08000 * 120.00137 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00214 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99634 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00110 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47661 * 89.99943 * 24 22 20 26 26 H 1.48505 * 109.46833 * 210.00101 * 24 22 20 27 27 H 1.48508 * 109.46872 * 329.99835 * 24 22 20 28 28 C 1.47008 * 107.90425 * 325.35938 * 14 11 10 29 29 H 1.09000 * 109.47082 * 59.99789 * 1 2 3 30 30 H 1.08994 * 109.46937 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46879 * 300.00108 * 1 2 3 32 32 H 1.10160 * 109.24302 * 126.76561 * 7 5 3 33 33 H 1.10193 * 109.16986 * 10.96981 * 7 5 3 34 34 H 1.08872 * 111.50644 * 194.75328 * 10 8 7 35 35 H 1.08850 * 111.56493 * 320.14368 * 10 8 7 36 36 H 1.11283 * 107.70688 * 233.83089 * 13 5 3 37 37 H 1.09887 * 109.64736 * 346.48631 * 13 5 3 38 38 H 1.08993 * 109.47209 * 294.43836 * 17 15 14 39 39 H 1.09006 * 109.46530 * 54.44039 * 17 15 14 40 40 H 1.09000 * 109.47186 * 174.43684 * 17 15 14 41 41 H 1.08999 * 109.47146 * 187.29103 * 18 15 14 42 42 H 1.08992 * 109.47024 * 307.29387 * 18 15 14 43 43 H 1.09000 * 109.47529 * 293.82136 * 19 18 15 44 44 H 1.09004 * 109.47326 * 53.81964 * 19 18 15 45 45 H 0.97009 * 119.99899 * 180.02562 * 23 22 20 46 46 H 1.09242 * 109.99726 * 129.34419 * 28 14 11 47 47 H 1.08763 * 110.76482 * 250.68420 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5737 1.2753 -0.0006 6 1 3.8892 0.7323 -0.9274 7 6 4.1272 0.4832 1.1619 8 6 4.7679 1.3351 2.2570 9 1 5.2658 0.7337 3.0272 10 6 5.7421 2.3174 1.5531 11 6 4.7151 3.3519 1.0094 12 1 5.2186 4.2913 0.7317 13 6 4.0157 2.7080 -0.1777 14 7 3.8021 3.5446 2.1472 15 6 2.5300 4.1709 1.8330 16 1 2.1548 3.7773 0.8883 17 6 1.5246 3.8696 2.9464 18 6 2.7219 5.6842 1.7150 19 6 3.5829 5.9949 0.4891 20 6 3.6464 7.4867 0.2849 21 1 3.1252 8.1471 0.9620 22 6 4.3708 8.0085 -0.7659 23 7 5.0067 7.2043 -1.5896 24 14 4.4501 9.8576 -1.0185 25 1 5.6079 10.4103 -0.2707 26 1 4.6086 10.1531 -2.4652 27 1 3.1968 10.4794 -0.5206 28 6 3.6786 2.2594 2.8502 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.8742 -0.2353 0.7888 33 1 3.3182 -0.1171 1.6086 34 1 6.4253 2.7798 2.2636 35 1 6.2799 1.8335 0.7398 36 1 4.7182 2.7413 -1.0401 37 1 3.1632 3.3201 -0.5036 38 1 1.3129 2.8005 2.9653 39 1 1.9428 4.1743 3.9058 40 1 0.6018 4.4194 2.7612 41 1 1.7502 6.1664 1.6082 42 1 3.2168 6.0587 2.6110 43 1 4.5894 5.6062 0.6439 44 1 3.1438 5.5260 -0.3916 45 1 5.5167 7.5715 -2.3286 46 1 3.8567 2.3995 3.9188 47 1 2.6911 1.8298 2.6978 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:30 Heat of formation + Delta-G solvation = -81.165938 kcal Electronic energy + Delta-G solvation = -26432.517654 eV Core-core repulsion = 23001.219117 eV Total energy + Delta-G solvation = -3431.298537 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17807 -39.56440 -36.45310 -35.67871 -33.18798 -32.14704 -31.19712 -29.90196 -28.14749 -27.48196 -25.60285 -24.39333 -23.68904 -21.98453 -20.90723 -20.12162 -19.03418 -18.52198 -17.36250 -16.83232 -16.43929 -16.09300 -15.75703 -15.19295 -14.55536 -14.24779 -13.83810 -13.46726 -13.36910 -13.09389 -12.76720 -12.58837 -12.53131 -12.20109 -12.11798 -12.04898 -11.93577 -11.72781 -11.24922 -11.05950 -10.95215 -10.84728 -10.75381 -10.61178 -10.48947 -10.31279 -10.25139 -10.06459 -10.02491 -9.81067 -9.27203 -8.95990 -8.76708 -8.15398 -7.32244 -5.88361 -3.87592 2.27437 2.65788 3.38704 3.44548 3.48732 4.40119 4.52089 4.56128 4.68854 4.73343 4.88791 4.99676 5.07641 5.16789 5.21969 5.33935 5.42017 5.46250 5.50544 5.60971 5.66961 5.75316 5.83258 5.84475 5.96179 5.99372 6.03882 6.08685 6.20232 6.27546 6.32755 6.44306 6.51301 6.59890 6.66698 6.75051 6.77747 6.92116 7.20944 7.40847 7.75446 7.86000 7.87851 8.00252 8.15549 8.18231 8.61049 9.19360 9.74603 11.22725 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.004874 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.840059 B = 5743.495011 C = 5985.660348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.450 3.550 4 O -0.486 6.486 5 C -0.059 4.059 6 H 0.094 0.906 7 C -0.101 4.101 8 C -0.105 4.105 9 H 0.088 0.912 10 C -0.122 4.122 11 C 0.092 3.908 12 H 0.127 0.873 13 C -0.149 4.149 14 N -0.540 5.540 15 C 0.075 3.925 16 H 0.078 0.922 17 C -0.143 4.143 18 C -0.100 4.100 19 C 0.019 3.981 20 C -0.514 4.514 21 H 0.051 0.949 22 C 0.056 3.944 23 N -0.897 5.897 24 Si 0.886 3.114 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.276 1.276 28 C 0.059 3.941 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.040 0.960 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.049 0.951 43 H 0.032 0.968 44 H 0.010 0.990 45 H 0.257 0.743 46 H 0.063 0.937 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.301 -18.390 5.381 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.293 3.707 4 O -0.371 6.371 5 C -0.078 4.078 6 H 0.112 0.888 7 C -0.138 4.138 8 C -0.124 4.124 9 H 0.106 0.894 10 C -0.160 4.160 11 C -0.016 4.016 12 H 0.144 0.856 13 C -0.187 4.187 14 N -0.265 5.265 15 C -0.032 4.032 16 H 0.095 0.905 17 C -0.200 4.200 18 C -0.138 4.138 19 C -0.017 4.017 20 C -0.552 4.552 21 H 0.069 0.931 22 C -0.144 4.144 23 N -0.537 5.537 24 Si 0.715 3.285 25 H -0.208 1.208 26 H -0.214 1.214 27 H -0.201 1.201 28 C -0.069 4.069 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.028 0.972 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.281 -17.766 5.487 18.881 hybrid contribution -0.680 0.517 -0.858 1.211 sum -3.961 -17.249 4.628 18.293 Atomic orbital electron populations 1.23218 0.76737 1.03272 1.02617 1.86483 1.23103 1.33893 1.84603 1.24428 0.92757 0.81171 0.72377 1.90637 1.66855 1.35676 1.43977 1.20726 0.86217 0.99553 1.01305 0.88795 1.21384 1.00844 0.97094 0.94522 1.22481 0.96723 0.96712 0.96521 0.89369 1.22912 0.96952 0.96409 0.99721 1.22785 0.92053 0.98936 0.87793 0.85576 1.21865 1.04072 0.92080 1.00712 1.60620 1.16468 1.22926 1.26484 1.21705 0.86733 0.96508 0.98290 0.90459 1.21959 0.99008 0.99735 0.99348 1.21668 0.99762 0.91615 1.00787 1.19355 0.95209 0.95640 0.91521 1.21365 1.29848 0.92814 1.11212 0.93075 1.24971 0.95827 0.97426 0.96136 1.69953 1.33135 1.34159 1.16470 0.86684 0.78309 0.86456 0.77064 1.20793 1.21416 1.20056 1.22657 0.96575 0.89191 0.98483 0.91934 0.88418 0.92019 0.91055 0.91547 0.90702 0.90991 0.90995 0.88423 0.94076 0.92803 0.92790 0.93703 0.93216 0.95062 0.97200 0.93303 0.91871 0.94104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.52 10.00 -39.28 -0.39 -4.91 16 3 C 0.45 6.57 6.87 36.36 0.25 6.82 16 4 O -0.49 -8.60 12.51 -18.75 -0.23 -8.84 16 5 C -0.06 -0.78 2.36 -93.35 -0.22 -1.00 16 6 H 0.09 1.06 8.27 -50.21 -0.42 0.64 16 7 C -0.10 -1.11 4.55 -27.74 -0.13 -1.24 16 8 C -0.11 -1.25 4.06 -88.64 -0.36 -1.61 16 9 H 0.09 0.88 8.20 -51.55 -0.42 0.45 16 10 C -0.12 -1.63 6.25 -24.18 -0.15 -1.78 16 11 C 0.09 1.57 2.78 -66.67 -0.19 1.39 16 12 H 0.13 2.63 5.30 -51.28 -0.27 2.36 16 13 C -0.15 -2.44 4.24 -28.21 -0.12 -2.56 16 14 N -0.54 -9.40 4.36 -217.05 -0.95 -10.35 16 15 C 0.07 1.43 2.37 -68.61 -0.16 1.27 16 16 H 0.08 1.60 3.00 -51.93 -0.16 1.45 16 17 C -0.14 -2.37 8.35 37.16 0.31 -2.06 16 18 C -0.10 -2.26 4.82 -26.73 -0.13 -2.39 16 19 C 0.02 0.50 4.10 -27.89 -0.11 0.39 16 20 C -0.51 -14.99 9.11 -34.44 -0.31 -15.31 16 21 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 24 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.06 0.84 5.11 -2.88 -0.01 0.82 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.07 0.65 8.24 -51.27 -0.42 0.22 16 33 H 0.07 0.72 7.24 -51.25 -0.37 0.35 16 34 H 0.07 1.01 8.13 -52.00 -0.42 0.59 16 35 H 0.07 0.86 7.90 -52.01 -0.41 0.45 16 36 H 0.07 1.14 8.31 -50.61 -0.42 0.72 16 37 H 0.10 1.95 4.61 -51.42 -0.24 1.72 16 38 H 0.04 0.63 6.23 -51.93 -0.32 0.31 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 41 H 0.04 1.02 8.13 -51.93 -0.42 0.60 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.03 0.85 4.80 -51.93 -0.25 0.60 16 44 H 0.01 0.28 7.41 -51.93 -0.38 -0.11 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.06 0.87 8.16 -51.79 -0.42 0.45 16 47 H 0.04 0.60 5.29 -52.06 -0.28 0.33 16 LS Contribution 346.08 15.07 5.22 5.22 Total: -1.00 -31.79 346.08 -8.71 -40.51 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.70 Total: 1.69 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.37 Total: -14.29 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.21 Total: -36.57 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.63 Total: -13.75 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.79 -8.71 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.661 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds