Wall clock time and date at job start Tue Mar 31 2020 07:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34239 * 117.00155 * 2 1 4 4 O 1.20824 * 119.99668 * 0.02562 * 3 2 1 5 5 C 1.51429 * 120.00009 * 180.02562 * 3 2 1 6 6 H 1.11953 * 104.85858 * 58.90072 * 5 3 2 7 7 C 1.51172 * 109.75137 * 305.17964 * 5 3 2 8 8 C 1.52828 * 114.35795 * 248.93458 * 7 5 3 9 9 H 1.09669 * 112.81904 * 186.86504 * 8 7 5 10 10 C 1.55229 * 106.91346 * 310.88789 * 8 7 5 11 11 C 1.55580 * 99.49491 * 77.48699 * 10 8 7 12 12 H 1.10134 * 110.70102 * 163.07488 * 11 10 8 13 13 C 1.50981 * 110.00131 * 172.82320 * 5 3 2 14 14 N 1.47151 * 103.08596 * 43.69627 * 11 10 8 15 15 C 1.45228 * 115.63668 * 196.36129 * 14 11 10 16 16 H 1.09001 * 109.47288 * 40.32391 * 15 14 11 17 17 C 1.53011 * 109.46745 * 160.31906 * 15 14 11 18 18 C 1.53005 * 109.47464 * 280.31647 * 15 14 11 19 19 C 1.52996 * 109.46525 * 67.29458 * 18 15 14 20 20 C 1.50699 * 109.46962 * 173.81955 * 19 18 15 21 21 H 1.08000 * 120.00137 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00214 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99634 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00110 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47661 * 89.99943 * 24 22 20 26 26 H 1.48505 * 109.46833 * 210.00101 * 24 22 20 27 27 H 1.48508 * 109.46872 * 329.99835 * 24 22 20 28 28 C 1.47008 * 107.90425 * 325.35938 * 14 11 10 29 29 H 1.09000 * 109.47082 * 59.99789 * 1 2 3 30 30 H 1.08994 * 109.46937 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46879 * 300.00108 * 1 2 3 32 32 H 1.10160 * 109.24302 * 126.76561 * 7 5 3 33 33 H 1.10193 * 109.16986 * 10.96981 * 7 5 3 34 34 H 1.08872 * 111.50644 * 194.75328 * 10 8 7 35 35 H 1.08850 * 111.56493 * 320.14368 * 10 8 7 36 36 H 1.11283 * 107.70688 * 233.83089 * 13 5 3 37 37 H 1.09887 * 109.64736 * 346.48631 * 13 5 3 38 38 H 1.08993 * 109.47209 * 294.43836 * 17 15 14 39 39 H 1.09006 * 109.46530 * 54.44039 * 17 15 14 40 40 H 1.09000 * 109.47186 * 174.43684 * 17 15 14 41 41 H 1.08999 * 109.47146 * 187.29103 * 18 15 14 42 42 H 1.08992 * 109.47024 * 307.29387 * 18 15 14 43 43 H 1.09000 * 109.47529 * 293.82136 * 19 18 15 44 44 H 1.09004 * 109.47326 * 53.81964 * 19 18 15 45 45 H 0.97009 * 119.99899 * 180.02562 * 23 22 20 46 46 H 1.09242 * 109.99726 * 129.34419 * 28 14 11 47 47 H 1.08763 * 110.76482 * 250.68420 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5737 1.2753 -0.0006 6 1 3.8892 0.7323 -0.9274 7 6 4.1272 0.4832 1.1619 8 6 4.7679 1.3351 2.2570 9 1 5.2658 0.7337 3.0272 10 6 5.7421 2.3174 1.5531 11 6 4.7151 3.3519 1.0094 12 1 5.2186 4.2913 0.7317 13 6 4.0157 2.7080 -0.1777 14 7 3.8021 3.5446 2.1472 15 6 2.5300 4.1709 1.8330 16 1 2.1548 3.7773 0.8883 17 6 1.5246 3.8696 2.9464 18 6 2.7219 5.6842 1.7150 19 6 3.5829 5.9949 0.4891 20 6 3.6464 7.4867 0.2849 21 1 3.1252 8.1471 0.9620 22 6 4.3708 8.0085 -0.7659 23 7 5.0067 7.2043 -1.5896 24 14 4.4501 9.8576 -1.0185 25 1 5.6079 10.4103 -0.2707 26 1 4.6086 10.1531 -2.4652 27 1 3.1968 10.4794 -0.5206 28 6 3.6786 2.2594 2.8502 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.8742 -0.2353 0.7888 33 1 3.3182 -0.1171 1.6086 34 1 6.4253 2.7798 2.2636 35 1 6.2799 1.8335 0.7398 36 1 4.7182 2.7413 -1.0401 37 1 3.1632 3.3201 -0.5036 38 1 1.3129 2.8005 2.9653 39 1 1.9428 4.1743 3.9058 40 1 0.6018 4.4194 2.7612 41 1 1.7502 6.1664 1.6082 42 1 3.2168 6.0587 2.6110 43 1 4.5894 5.6062 0.6439 44 1 3.1438 5.5260 -0.3916 45 1 5.5167 7.5715 -2.3286 46 1 3.8567 2.3995 3.9188 47 1 2.6911 1.8298 2.6978 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:30 Heat of formation + Delta-G solvation = -100.432444 kcal Electronic energy + Delta-G solvation = -26433.353113 eV Core-core repulsion = 23001.219117 eV Total energy + Delta-G solvation = -3432.133995 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.33339 -40.72027 -37.54277 -37.16422 -35.14082 -33.61110 -32.40436 -31.66223 -29.40486 -28.47281 -27.27882 -25.92244 -24.76783 -23.65001 -22.05265 -21.82454 -20.24707 -19.80088 -18.53221 -18.35388 -17.81684 -17.52701 -17.04466 -16.53736 -16.44279 -15.58502 -15.02787 -14.66573 -14.50083 -14.34440 -14.29074 -14.13325 -13.87696 -13.63887 -13.43583 -13.34076 -13.12694 -12.97315 -12.95721 -12.84808 -12.53638 -12.23570 -12.16766 -12.07596 -11.84712 -11.81103 -11.68770 -11.35168 -11.23265 -11.10150 -10.98059 -10.85599 -10.77186 -10.32892 -8.71596 -8.14926 -6.24081 1.17320 1.37525 1.39166 1.49862 1.67646 2.42298 3.11906 3.16376 3.47058 3.64125 3.69761 3.84981 4.11555 4.15929 4.21613 4.24012 4.26466 4.28955 4.30476 4.43049 4.59430 4.65038 4.66209 4.70578 4.75774 4.77723 4.85074 4.91083 5.00254 5.02141 5.06046 5.11356 5.18794 5.24968 5.28545 5.33374 5.41389 5.46943 5.49337 5.52075 5.66829 5.91939 6.00746 6.34968 6.47239 6.64814 6.76834 6.92273 7.42592 8.95630 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.004874 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.840059 B = 5743.495011 C = 5985.660348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.451 3.549 4 O -0.526 6.526 5 C -0.059 4.059 6 H 0.120 0.880 7 C -0.099 4.099 8 C -0.092 4.092 9 H 0.124 0.876 10 C -0.112 4.112 11 C 0.084 3.916 12 H 0.075 0.925 13 C -0.137 4.137 14 N -0.552 5.552 15 C 0.080 3.920 16 H 0.063 0.937 17 C -0.132 4.132 18 C -0.092 4.092 19 C 0.034 3.966 20 C -0.546 4.546 21 H 0.048 0.952 22 C 0.005 3.995 23 N -0.926 5.926 24 Si 0.958 3.042 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.270 1.270 28 C 0.055 3.945 29 H 0.054 0.946 30 H 0.136 0.864 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.034 0.966 42 H 0.044 0.956 43 H 0.022 0.978 44 H -0.024 1.024 45 H 0.262 0.738 46 H 0.072 0.928 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.826 -20.614 6.492 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.295 3.705 4 O -0.415 6.415 5 C -0.078 4.078 6 H 0.138 0.862 7 C -0.136 4.136 8 C -0.111 4.111 9 H 0.142 0.858 10 C -0.150 4.150 11 C -0.024 4.024 12 H 0.092 0.908 13 C -0.176 4.176 14 N -0.277 5.277 15 C -0.028 4.028 16 H 0.081 0.919 17 C -0.190 4.190 18 C -0.130 4.130 19 C -0.002 4.002 20 C -0.584 4.584 21 H 0.066 0.934 22 C -0.193 4.193 23 N -0.567 5.567 24 Si 0.783 3.217 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.194 1.194 28 C -0.072 4.072 29 H 0.073 0.927 30 H 0.154 0.846 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.040 0.960 44 H -0.006 1.006 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.806 -20.020 6.611 21.269 hybrid contribution -0.857 1.212 -1.252 1.942 sum -3.664 -18.807 5.359 19.896 Atomic orbital electron populations 1.23499 0.75237 1.05598 1.02072 1.86472 1.24521 1.32397 1.83979 1.24705 0.93301 0.81177 0.71309 1.90637 1.67767 1.37126 1.45952 1.20736 0.85578 0.97467 1.04045 0.86247 1.21414 1.02040 0.96875 0.93274 1.22522 0.95191 0.96098 0.97254 0.85788 1.22870 0.96258 0.95611 1.00281 1.22549 0.93254 0.98043 0.88528 0.90758 1.21691 1.01902 0.93882 1.00127 1.60504 1.15359 1.25228 1.26635 1.21476 0.88467 0.93884 0.98959 0.91941 1.21845 0.98013 1.00693 0.98427 1.21537 0.98151 0.94787 0.98517 1.19148 0.95200 0.94127 0.91764 1.21778 1.30534 0.94221 1.11883 0.93386 1.25856 0.95126 1.02699 0.95598 1.70085 1.33388 1.36387 1.16803 0.85560 0.78715 0.80085 0.77345 1.19607 1.20555 1.19412 1.22775 0.97676 0.88073 0.98646 0.92717 0.84591 0.92458 0.87588 0.90453 0.90881 0.89097 0.91579 0.92962 0.92543 0.92023 0.93012 0.94721 0.93741 0.96003 1.00605 0.92957 0.90934 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -8.14 10.00 -51.50 -0.51 -8.66 16 3 C 0.45 12.86 6.87 71.47 0.49 13.35 16 4 O -0.53 -19.27 12.51 21.97 0.27 -19.00 16 5 C -0.06 -1.48 2.36 -12.56 -0.03 -1.51 16 6 H 0.12 2.40 8.27 -0.77 -0.01 2.39 16 7 C -0.10 -1.79 4.55 29.94 0.14 -1.65 16 8 C -0.09 -1.85 4.06 -9.51 -0.04 -1.89 16 9 H 0.12 1.76 8.20 -2.03 -0.02 1.74 16 10 C -0.11 -2.82 6.25 32.25 0.20 -2.62 16 11 C 0.08 2.99 2.78 45.46 0.13 3.12 16 12 H 0.07 3.39 5.30 -1.78 -0.01 3.38 16 13 C -0.14 -4.69 4.24 29.64 0.13 -4.57 16 14 N -0.55 -19.55 4.36 -840.61 -3.67 -23.22 16 15 C 0.08 3.19 2.37 45.24 0.11 3.29 16 16 H 0.06 2.76 3.00 -2.39 -0.01 2.75 16 17 C -0.13 -4.38 8.35 71.99 0.60 -3.78 16 18 C -0.09 -4.39 4.82 30.59 0.15 -4.24 16 19 C 0.03 1.93 4.10 29.85 0.12 2.05 16 20 C -0.55 -33.36 9.11 25.60 0.23 -33.13 16 21 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 22 C 0.00 0.30 5.46 84.66 0.46 0.76 16 23 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 24 Si 0.96 46.46 29.54 68.60 2.03 48.48 16 25 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 27 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 28 C 0.06 1.47 5.11 86.85 0.44 1.91 16 29 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 30 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 32 H 0.11 1.30 8.24 -1.77 -0.01 1.29 16 33 H 0.08 1.31 7.24 -1.75 -0.01 1.30 16 34 H 0.07 1.86 8.13 -2.45 -0.02 1.84 16 35 H 0.09 1.95 7.90 -2.47 -0.02 1.93 16 36 H 0.07 2.23 8.31 -1.15 -0.01 2.22 16 37 H 0.05 2.28 4.61 -1.91 -0.01 2.27 16 38 H 0.06 1.69 6.23 -2.39 -0.01 1.67 16 39 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 41 H 0.03 1.67 8.13 -2.39 -0.02 1.65 16 42 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.02 1.28 4.80 -2.39 -0.01 1.27 16 44 H -0.02 -1.52 7.41 -2.39 -0.02 -1.54 16 45 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 46 H 0.07 1.81 8.16 -2.26 -0.02 1.79 16 47 H 0.04 1.07 5.29 -2.51 -0.01 1.06 16 Total: -1.00 -73.54 346.08 3.72 -69.82 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.99 Total: 17.17 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 4.33 Total: -27.17 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -3.38 Total: -80.65 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.24 Total: -27.65 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -73.54 3.72 -69.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.615 kcal (2) G-P(sol) polarization free energy of solvation -73.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds