Wall clock time and date at job start Tue Mar 31 2020 07:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99643 * 2 1 4 4 O 1.20827 * 120.00409 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99888 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.17614 * 299.54964 * 5 3 2 7 7 C 1.53034 * 109.32347 * 59.10666 * 5 3 2 8 8 C 1.53962 * 108.83468 * 175.71125 * 7 5 3 9 9 H 1.08996 * 113.63634 * 168.66255 * 8 7 5 10 10 C 1.55414 * 106.43201 * 293.87347 * 8 7 5 11 11 C 1.55175 * 100.42653 * 73.29424 * 10 8 7 12 12 H 1.08998 * 112.49335 * 162.70902 * 11 10 8 13 13 C 1.52988 * 109.32480 * 179.97438 * 5 3 2 14 14 N 1.48211 * 104.21531 * 40.59968 * 11 10 8 15 15 C 1.46904 * 110.99310 * 211.58254 * 14 11 10 16 16 H 1.08994 * 109.47732 * 41.00285 * 15 14 11 17 17 C 1.52999 * 109.47048 * 280.99372 * 15 14 11 18 18 C 1.53002 * 109.46526 * 161.00050 * 15 14 11 19 19 C 1.53009 * 109.47056 * 176.41158 * 18 15 14 20 20 C 1.50699 * 109.47069 * 239.92982 * 19 18 15 21 21 H 1.08007 * 120.00087 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99995 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00092 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99947 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47046 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47082 * 299.99682 * 24 22 20 27 27 H 1.48502 * 109.47353 * 59.99925 * 24 22 20 28 28 C 1.47499 * 108.15504 * 333.57401 * 14 11 10 29 29 H 1.08994 * 109.47068 * 300.00626 * 1 2 3 30 30 H 1.08996 * 109.46887 * 60.01084 * 1 2 3 31 31 H 1.09004 * 109.46490 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.57491 * 55.90375 * 7 5 3 33 33 H 1.08995 * 109.57719 * 295.51551 * 7 5 3 34 34 H 1.08993 * 111.22374 * 191.09057 * 10 8 7 35 35 H 1.08999 * 111.22373 * 315.45630 * 10 8 7 36 36 H 1.09000 * 109.53012 * 64.70562 * 13 5 3 37 37 H 1.09000 * 109.59664 * 304.51623 * 13 5 3 38 38 H 1.09000 * 109.47757 * 300.00622 * 17 15 14 39 39 H 1.09001 * 109.46855 * 60.00684 * 17 15 14 40 40 H 1.09003 * 109.47131 * 180.02562 * 17 15 14 41 41 H 1.09001 * 109.47753 * 56.41319 * 18 15 14 42 42 H 1.08994 * 109.47402 * 296.40374 * 18 15 14 43 43 H 1.08990 * 109.47346 * 119.92829 * 19 18 15 44 44 H 1.09000 * 109.46574 * 359.92611 * 19 18 15 45 45 H 0.97003 * 119.99888 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.98581 * 120.38699 * 28 14 11 47 47 H 1.08997 * 109.98578 * 241.64744 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2750 0.0006 6 1 3.9501 0.7869 0.8964 7 6 4.1114 0.5608 -1.2383 8 6 5.6398 0.7406 -1.2836 9 1 6.1330 0.1054 -2.0193 10 6 5.8975 2.2559 -1.5137 11 6 5.5288 2.8190 -0.1155 12 1 5.9177 3.8245 0.0449 13 6 3.9963 2.7432 -0.0002 14 7 6.0970 1.8338 0.8350 15 6 5.2826 1.7493 2.0547 16 1 4.2260 1.7768 1.7889 17 6 5.6096 2.9316 2.9692 18 6 5.5911 0.4401 2.7840 19 6 4.8103 0.3925 4.0990 20 6 5.7744 0.2818 5.2519 21 1 6.8377 0.2482 5.0654 22 6 5.2991 0.2233 6.5448 23 7 4.0044 0.2647 6.7720 24 14 6.4942 0.0853 7.9739 25 1 5.7364 0.0406 9.2503 26 1 7.2964 -1.1560 7.8302 27 1 7.3997 1.2624 7.9775 28 6 6.1675 0.5269 0.1549 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 3.6660 0.9929 -2.1344 33 1 3.8700 -0.5007 -1.1837 34 1 6.9438 2.4464 -1.7524 35 1 5.2404 2.6550 -2.2863 36 1 3.6771 3.2169 0.9282 37 1 3.5410 3.2570 -0.8468 38 1 6.6663 2.9041 3.2351 39 1 5.3899 3.8643 2.4496 40 1 5.0057 2.8686 3.8744 41 1 6.6593 0.3837 2.9935 42 1 5.2988 -0.4025 2.1574 43 1 4.1464 -0.4718 4.0963 44 1 4.2208 1.3033 4.2045 45 1 3.6700 0.2232 7.6816 46 1 7.1997 0.1778 0.1249 47 1 5.5441 -0.1989 0.6770 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:33 Heat of formation + Delta-G solvation = -58.345264 kcal Electronic energy + Delta-G solvation = -26052.801408 eV Core-core repulsion = 22622.492450 eV Total energy + Delta-G solvation = -3430.308958 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.84792 -39.97669 -36.50500 -35.63029 -33.07217 -32.50717 -31.44902 -29.70729 -28.16819 -27.73839 -25.28223 -24.62319 -23.81671 -22.29143 -20.80995 -20.68763 -19.56080 -18.57367 -17.49159 -16.98155 -16.46703 -16.32351 -15.61189 -15.20450 -14.92874 -14.37431 -13.96775 -13.69224 -13.40845 -13.17632 -12.77255 -12.72540 -12.60126 -12.42155 -12.21862 -12.11061 -11.99493 -11.66292 -11.30722 -11.16802 -11.02830 -10.86300 -10.80641 -10.76150 -10.58829 -10.52330 -10.41987 -10.23450 -10.12747 -9.86877 -9.56441 -9.25743 -8.99915 -8.29525 -7.84065 -5.96067 -3.97335 2.21512 2.69565 3.35976 3.40288 3.43056 4.15851 4.39592 4.48479 4.50962 4.56155 4.91177 4.93170 5.03627 5.05009 5.13618 5.18645 5.26683 5.38483 5.39412 5.45327 5.49731 5.54858 5.62320 5.68298 5.75615 5.84714 5.96026 5.99417 6.02892 6.12642 6.15175 6.21926 6.27843 6.38136 6.52845 6.59847 6.67625 6.74552 6.99387 7.20526 7.34890 7.50966 7.74548 7.78244 7.83598 8.03235 8.47810 9.08916 9.66099 11.15040 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.004953 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.480399 B = 5652.071462 C = 6727.614078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.509 6.509 5 C -0.110 4.110 6 H 0.140 0.860 7 C -0.104 4.104 8 C -0.110 4.110 9 H 0.096 0.904 10 C -0.123 4.123 11 C 0.075 3.925 12 H 0.102 0.898 13 C -0.130 4.130 14 N -0.517 5.517 15 C 0.051 3.949 16 H 0.062 0.938 17 C -0.132 4.132 18 C -0.116 4.116 19 C 0.019 3.981 20 C -0.511 4.511 21 H 0.055 0.945 22 C 0.056 3.944 23 N -0.897 5.897 24 Si 0.889 3.111 25 H -0.288 1.288 26 H -0.278 1.278 27 H -0.277 1.277 28 C 0.030 3.970 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.011 0.989 44 H 0.023 0.977 45 H 0.260 0.740 46 H 0.074 0.926 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 1.357 -18.759 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.311 3.689 4 O -0.397 6.397 5 C -0.128 4.128 6 H 0.157 0.843 7 C -0.141 4.141 8 C -0.129 4.129 9 H 0.114 0.886 10 C -0.161 4.161 11 C -0.033 4.033 12 H 0.120 0.880 13 C -0.169 4.169 14 N -0.242 5.242 15 C -0.056 4.056 16 H 0.079 0.921 17 C -0.189 4.189 18 C -0.153 4.153 19 C -0.018 4.018 20 C -0.549 4.549 21 H 0.073 0.927 22 C -0.145 4.145 23 N -0.537 5.537 24 Si 0.717 3.283 25 H -0.214 1.214 26 H -0.203 1.203 27 H -0.202 1.202 28 C -0.097 4.097 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.030 0.970 44 H 0.041 0.959 45 H 0.069 0.931 46 H 0.093 0.907 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.363 1.802 -18.434 18.572 hybrid contribution -0.576 -0.275 0.755 0.988 sum -1.939 1.527 -17.679 17.850 Atomic orbital electron populations 1.23261 0.76544 1.03668 1.02439 1.86525 1.23291 1.33484 1.83969 1.23847 0.92037 0.81270 0.71781 1.90641 1.67237 1.36385 1.45403 1.21967 0.87080 0.99945 1.03790 0.84293 1.21777 0.95797 1.00746 0.95795 1.22805 0.94526 0.97169 0.98428 0.88622 1.22969 1.01756 0.94883 0.96492 1.23001 0.90999 0.97705 0.91642 0.88011 1.22171 0.97532 0.93280 1.03884 1.63892 1.50111 1.05447 1.04711 1.22479 0.95638 0.98131 0.89309 0.92111 1.21743 1.02843 0.95187 0.99158 1.22097 1.02331 0.93002 0.97901 1.19200 0.95272 0.97253 0.90120 1.21327 0.92871 1.49699 0.91037 0.92706 1.25029 0.94977 0.95545 0.98961 1.69954 1.12099 1.51040 1.20587 0.86707 0.81160 0.78648 0.81790 1.21421 1.20325 1.20250 1.23226 1.01734 0.92779 0.92008 0.91717 0.92184 0.88098 0.91568 0.90412 0.90700 0.90985 0.90219 0.90773 0.92267 0.94618 0.90712 0.91612 0.94074 0.97023 0.95868 0.93064 0.90722 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -4.97 10.47 -39.26 -0.41 -5.38 16 3 C 0.47 7.05 7.26 36.01 0.26 7.31 16 4 O -0.51 -8.74 15.67 -18.75 -0.29 -9.03 16 5 C -0.11 -1.48 1.69 -91.76 -0.15 -1.64 16 6 H 0.14 2.15 3.11 -51.93 -0.16 1.98 16 7 C -0.10 -1.13 4.68 -26.21 -0.12 -1.25 16 8 C -0.11 -1.13 4.32 -87.94 -0.38 -1.51 16 9 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 10 C -0.12 -1.24 6.17 -24.30 -0.15 -1.39 16 11 C 0.07 0.93 3.92 -65.38 -0.26 0.67 16 12 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 13 C -0.13 -1.73 3.48 -26.28 -0.09 -1.82 16 14 N -0.52 -7.55 5.01 -214.18 -1.07 -8.63 16 15 C 0.05 0.89 0.97 -67.71 -0.07 0.82 16 16 H 0.06 1.07 3.25 -51.93 -0.17 0.90 16 17 C -0.13 -2.42 8.93 37.16 0.33 -2.09 16 18 C -0.12 -2.32 4.29 -26.73 -0.11 -2.44 16 19 C 0.02 0.48 4.81 -27.88 -0.13 0.34 16 20 C -0.51 -14.22 9.06 -34.44 -0.31 -14.54 16 21 H 0.05 1.50 7.26 -52.48 -0.38 1.12 16 22 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 23 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 24 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 28 C 0.03 0.39 5.23 -2.60 -0.01 0.38 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.67 7.98 -51.93 -0.41 0.25 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.65 7.75 -51.93 -0.40 0.25 16 36 H 0.08 1.21 6.85 -51.93 -0.36 0.85 16 37 H 0.07 0.94 7.83 -51.93 -0.41 0.53 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.57 7.78 -51.93 -0.40 0.17 16 40 H 0.07 1.57 6.21 -51.93 -0.32 1.25 16 41 H 0.07 1.40 7.26 -51.93 -0.38 1.02 16 42 H 0.04 0.76 5.58 -51.93 -0.29 0.47 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.02 0.62 5.94 -51.93 -0.31 0.31 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.07 1.05 3.95 -51.93 -0.21 0.85 16 LS Contribution 346.59 15.07 5.22 5.22 Total: -1.00 -31.11 346.59 -8.63 -39.75 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.56 Total: 1.74 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -0.23 Total: -14.21 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.34 Total: -34.79 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.70 Total: -14.41 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.11 -8.63 -39.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.600 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds