Wall clock time and date at job start Tue Mar 31 2020 07:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99643 * 2 1 4 4 O 1.20827 * 120.00409 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99888 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.17614 * 299.54964 * 5 3 2 7 7 C 1.53034 * 109.32347 * 59.10666 * 5 3 2 8 8 C 1.53962 * 108.83468 * 175.71125 * 7 5 3 9 9 H 1.08996 * 113.63634 * 168.66255 * 8 7 5 10 10 C 1.55414 * 106.43201 * 293.87347 * 8 7 5 11 11 C 1.55175 * 100.42653 * 73.29424 * 10 8 7 12 12 H 1.08998 * 112.49335 * 162.70902 * 11 10 8 13 13 C 1.52988 * 109.32480 * 179.97438 * 5 3 2 14 14 N 1.48211 * 104.21531 * 40.59968 * 11 10 8 15 15 C 1.46904 * 110.99310 * 211.58254 * 14 11 10 16 16 H 1.08994 * 109.47732 * 41.00285 * 15 14 11 17 17 C 1.52999 * 109.47048 * 280.99372 * 15 14 11 18 18 C 1.53002 * 109.46526 * 161.00050 * 15 14 11 19 19 C 1.53009 * 109.47056 * 176.41158 * 18 15 14 20 20 C 1.50699 * 109.47069 * 239.92982 * 19 18 15 21 21 H 1.08007 * 120.00087 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99995 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00092 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99947 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47046 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47082 * 299.99682 * 24 22 20 27 27 H 1.48502 * 109.47353 * 59.99925 * 24 22 20 28 28 C 1.47499 * 108.15504 * 333.57401 * 14 11 10 29 29 H 1.08994 * 109.47068 * 300.00626 * 1 2 3 30 30 H 1.08996 * 109.46887 * 60.01084 * 1 2 3 31 31 H 1.09004 * 109.46490 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.57491 * 55.90375 * 7 5 3 33 33 H 1.08995 * 109.57719 * 295.51551 * 7 5 3 34 34 H 1.08993 * 111.22374 * 191.09057 * 10 8 7 35 35 H 1.08999 * 111.22373 * 315.45630 * 10 8 7 36 36 H 1.09000 * 109.53012 * 64.70562 * 13 5 3 37 37 H 1.09000 * 109.59664 * 304.51623 * 13 5 3 38 38 H 1.09000 * 109.47757 * 300.00622 * 17 15 14 39 39 H 1.09001 * 109.46855 * 60.00684 * 17 15 14 40 40 H 1.09003 * 109.47131 * 180.02562 * 17 15 14 41 41 H 1.09001 * 109.47753 * 56.41319 * 18 15 14 42 42 H 1.08994 * 109.47402 * 296.40374 * 18 15 14 43 43 H 1.08990 * 109.47346 * 119.92829 * 19 18 15 44 44 H 1.09000 * 109.46574 * 359.92611 * 19 18 15 45 45 H 0.97003 * 119.99888 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.98581 * 120.38699 * 28 14 11 47 47 H 1.08997 * 109.98578 * 241.64744 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2750 0.0006 6 1 3.9501 0.7869 0.8964 7 6 4.1114 0.5608 -1.2383 8 6 5.6398 0.7406 -1.2836 9 1 6.1330 0.1054 -2.0193 10 6 5.8975 2.2559 -1.5137 11 6 5.5288 2.8190 -0.1155 12 1 5.9177 3.8245 0.0449 13 6 3.9963 2.7432 -0.0002 14 7 6.0970 1.8338 0.8350 15 6 5.2826 1.7493 2.0547 16 1 4.2260 1.7768 1.7889 17 6 5.6096 2.9316 2.9692 18 6 5.5911 0.4401 2.7840 19 6 4.8103 0.3925 4.0990 20 6 5.7744 0.2818 5.2519 21 1 6.8377 0.2482 5.0654 22 6 5.2991 0.2233 6.5448 23 7 4.0044 0.2647 6.7720 24 14 6.4942 0.0853 7.9739 25 1 5.7364 0.0406 9.2503 26 1 7.2964 -1.1560 7.8302 27 1 7.3997 1.2624 7.9775 28 6 6.1675 0.5269 0.1549 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 3.6660 0.9929 -2.1344 33 1 3.8700 -0.5007 -1.1837 34 1 6.9438 2.4464 -1.7524 35 1 5.2404 2.6550 -2.2863 36 1 3.6771 3.2169 0.9282 37 1 3.5410 3.2570 -0.8468 38 1 6.6663 2.9041 3.2351 39 1 5.3899 3.8643 2.4496 40 1 5.0057 2.8686 3.8744 41 1 6.6593 0.3837 2.9935 42 1 5.2988 -0.4025 2.1574 43 1 4.1464 -0.4718 4.0963 44 1 4.2208 1.3033 4.2045 45 1 3.6700 0.2232 7.6816 46 1 7.1997 0.1778 0.1249 47 1 5.5441 -0.1989 0.6770 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:32 Heat of formation + Delta-G solvation = -76.979627 kcal Electronic energy + Delta-G solvation = -26053.609455 eV Core-core repulsion = 22622.492450 eV Total energy + Delta-G solvation = -3431.117005 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.93265 -41.11382 -37.66480 -37.13147 -34.87346 -33.72504 -32.72173 -31.08091 -29.64908 -28.68088 -27.11802 -25.71328 -24.82051 -23.98123 -22.20280 -21.75099 -20.67162 -19.80642 -18.64676 -18.51483 -18.04821 -17.54051 -16.86717 -16.59705 -16.18691 -16.04574 -15.15496 -14.81302 -14.55572 -14.33357 -14.25665 -13.96146 -13.89185 -13.64994 -13.45363 -13.37259 -13.11319 -13.00994 -12.85959 -12.76158 -12.51361 -12.36426 -12.22219 -12.06185 -11.93330 -11.89566 -11.77510 -11.33081 -11.29507 -11.23724 -11.13446 -11.05021 -10.84769 -10.48221 -9.02723 -8.16823 -6.25940 1.04229 1.39907 1.42542 1.50130 1.67301 2.42382 3.04123 3.16179 3.42105 3.51142 3.61144 3.87108 3.98677 4.07934 4.12154 4.19187 4.20361 4.24598 4.25861 4.30960 4.49388 4.50118 4.58294 4.64388 4.67553 4.68274 4.90668 4.96135 5.00952 5.04340 5.06617 5.08387 5.11795 5.16512 5.25094 5.26670 5.31463 5.33395 5.40071 5.54166 5.60071 5.78455 5.88798 6.21667 6.26081 6.30958 6.60199 6.89961 7.42189 8.94614 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.004953 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.480399 B = 5652.071462 C = 6727.614078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.464 3.536 4 O -0.537 6.537 5 C -0.108 4.108 6 H 0.118 0.882 7 C -0.099 4.099 8 C -0.097 4.097 9 H 0.125 0.875 10 C -0.113 4.113 11 C 0.072 3.928 12 H 0.107 0.893 13 C -0.124 4.124 14 N -0.522 5.522 15 C 0.065 3.935 16 H 0.059 0.941 17 C -0.125 4.125 18 C -0.101 4.101 19 C 0.025 3.975 20 C -0.526 4.526 21 H 0.057 0.943 22 C 0.000 4.000 23 N -0.935 5.935 24 Si 0.958 3.042 25 H -0.285 1.285 26 H -0.267 1.267 27 H -0.268 1.268 28 C 0.024 3.976 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.039 0.961 41 H 0.055 0.945 42 H 0.057 0.943 43 H -0.018 1.018 44 H 0.002 0.998 45 H 0.261 0.739 46 H 0.080 0.920 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 1.050 -20.891 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.309 3.691 4 O -0.427 6.427 5 C -0.127 4.127 6 H 0.135 0.865 7 C -0.136 4.136 8 C -0.116 4.116 9 H 0.143 0.857 10 C -0.151 4.151 11 C -0.036 4.036 12 H 0.125 0.875 13 C -0.163 4.163 14 N -0.247 5.247 15 C -0.043 4.043 16 H 0.076 0.924 17 C -0.183 4.183 18 C -0.138 4.138 19 C -0.013 4.013 20 C -0.564 4.564 21 H 0.076 0.924 22 C -0.198 4.198 23 N -0.576 5.576 24 Si 0.783 3.217 25 H -0.211 1.211 26 H -0.192 1.192 27 H -0.193 1.193 28 C -0.103 4.103 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.000 1.000 44 H 0.020 0.980 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.099 1.480 -20.584 20.637 hybrid contribution -1.107 -0.197 1.416 1.808 sum -1.007 1.282 -19.168 19.237 Atomic orbital electron populations 1.23557 0.74929 1.05772 1.02396 1.86515 1.24999 1.32913 1.83536 1.24214 0.92720 0.81183 0.70985 1.90621 1.67957 1.37232 1.46861 1.21962 0.86136 1.00217 1.04365 0.86460 1.21801 0.96318 1.00758 0.94725 1.22816 0.93788 0.97961 0.97008 0.85672 1.22962 1.02934 0.94232 0.94941 1.23139 0.90051 0.97582 0.92835 0.87502 1.22109 0.98334 0.93037 1.02833 1.63831 1.49335 1.07049 1.04453 1.22174 0.96027 0.95739 0.90368 0.92396 1.21636 1.01420 0.96998 0.98257 1.21856 1.00504 0.95608 0.95865 1.19078 0.94815 0.94747 0.92643 1.21709 0.93354 1.49267 0.92088 0.92431 1.25928 0.96714 0.95124 1.02001 1.70094 1.14131 1.52108 1.21247 0.85603 0.78880 0.79148 0.78056 1.21065 1.19189 1.19336 1.23284 1.01927 0.91403 0.93684 0.92912 0.91122 0.84987 0.89971 0.89917 0.89461 0.89132 0.92972 0.89843 0.93052 0.92477 0.94246 0.92648 0.92424 0.99992 0.98002 0.92999 0.90175 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -9.99 10.47 -51.42 -0.54 -10.53 16 3 C 0.46 13.98 7.26 71.24 0.52 14.50 16 4 O -0.54 -18.63 15.67 21.96 0.34 -18.29 16 5 C -0.11 -2.86 1.69 -11.53 -0.02 -2.88 16 6 H 0.12 3.66 3.11 -2.39 -0.01 3.65 16 7 C -0.10 -1.87 4.68 30.93 0.14 -1.73 16 8 C -0.10 -1.63 4.32 -9.06 -0.04 -1.67 16 9 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 10 C -0.11 -1.83 6.17 32.17 0.20 -1.64 16 11 C 0.07 1.63 3.92 45.70 0.18 1.81 16 12 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 13 C -0.12 -3.20 3.48 30.88 0.11 -3.09 16 14 N -0.52 -14.62 5.01 -831.55 -4.17 -18.79 16 15 C 0.06 2.27 0.97 44.91 0.04 2.32 16 16 H 0.06 2.12 3.25 -2.39 -0.01 2.11 16 17 C -0.13 -4.75 8.93 71.98 0.64 -4.11 16 18 C -0.10 -4.16 4.29 30.60 0.13 -4.02 16 19 C 0.02 1.31 4.81 29.85 0.14 1.45 16 20 C -0.53 -30.08 9.06 25.60 0.23 -29.85 16 21 H 0.06 3.19 7.26 -2.91 -0.02 3.17 16 22 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 23 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 24 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 C 0.02 0.58 5.23 86.77 0.45 1.03 16 29 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 31 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 1.35 7.98 -2.39 -0.02 1.33 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.21 7.75 -2.39 -0.02 1.19 16 36 H 0.05 1.61 6.85 -2.39 -0.02 1.60 16 37 H 0.08 1.98 7.83 -2.39 -0.02 1.96 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 1.86 7.78 -2.39 -0.02 1.84 16 40 H 0.04 1.75 6.21 -2.39 -0.01 1.73 16 41 H 0.05 2.38 7.26 -2.39 -0.02 2.36 16 42 H 0.06 2.17 5.58 -2.39 -0.01 2.16 16 43 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 44 H 0.00 0.10 5.94 -2.39 -0.01 0.08 16 45 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 46 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.06 1.61 3.95 -2.39 -0.01 1.61 16 Total: -1.00 -69.33 346.59 3.30 -66.03 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.96 Total: 17.72 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 4.39 Total: -25.69 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -3.89 Total: -76.27 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.19 Total: -28.82 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -69.33 3.30 -66.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.952 kcal (2) G-P(sol) polarization free energy of solvation -69.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds