Wall clock time and date at job start Tue Mar 31 2020 07:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00118 * 2 1 4 4 O 1.20827 * 119.99658 * 359.97438 * 3 2 1 5 5 C 1.51429 * 120.00208 * 179.97438 * 3 2 1 6 6 H 1.12002 * 104.78744 * 74.09502 * 5 3 2 7 7 C 1.51133 * 109.71979 * 320.45070 * 5 3 2 8 8 C 1.52669 * 114.75943 * 247.86424 * 7 5 3 9 9 H 1.09769 * 112.79383 * 188.38417 * 8 7 5 10 10 C 1.55212 * 107.28453 * 312.48409 * 8 7 5 11 11 C 1.55562 * 99.50486 * 76.68545 * 10 8 7 12 12 H 1.10097 * 110.73818 * 162.59906 * 11 10 8 13 13 C 1.50981 * 110.08753 * 188.01753 * 5 3 2 14 14 N 1.47003 * 103.56223 * 42.69901 * 11 10 8 15 15 C 1.45014 * 116.15239 * 197.88517 * 14 11 10 16 16 H 1.08997 * 109.47557 * 73.74591 * 15 14 11 17 17 C 1.52998 * 109.46882 * 313.73964 * 15 14 11 18 18 C 1.53002 * 109.46943 * 193.74649 * 15 14 11 19 19 C 1.53006 * 109.46958 * 292.11879 * 18 15 14 20 20 C 1.50699 * 109.47210 * 186.03897 * 19 18 15 21 21 H 1.08003 * 119.99877 * 0.02562 * 20 19 18 22 22 C 1.37869 * 119.99925 * 180.02562 * 20 19 18 23 23 N 1.31523 * 120.00194 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00280 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47098 * 90.00109 * 24 22 20 26 26 H 1.48494 * 109.47418 * 210.00300 * 24 22 20 27 27 H 1.48493 * 109.47077 * 330.00256 * 24 22 20 28 28 C 1.46928 * 108.33810 * 328.31828 * 14 11 10 29 29 H 1.09004 * 109.47245 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47093 * 300.00436 * 1 2 3 31 31 H 1.08999 * 109.46717 * 60.00665 * 1 2 3 32 32 H 1.10291 * 109.10065 * 10.12416 * 7 5 3 33 33 H 1.10226 * 109.16663 * 125.52626 * 7 5 3 34 34 H 1.08860 * 111.52462 * 319.33713 * 10 8 7 35 35 H 1.08861 * 111.52790 * 193.99072 * 10 8 7 36 36 H 1.11206 * 107.80480 * 233.19084 * 13 5 3 37 37 H 1.09814 * 109.81158 * 346.15751 * 13 5 3 38 38 H 1.09000 * 109.47140 * 178.80410 * 17 15 14 39 39 H 1.08992 * 109.47634 * 298.80582 * 17 15 14 40 40 H 1.09007 * 109.47093 * 58.80555 * 17 15 14 41 41 H 1.09000 * 109.47534 * 52.11724 * 18 15 14 42 42 H 1.08995 * 109.47313 * 172.12437 * 18 15 14 43 43 H 1.08994 * 109.47198 * 306.04345 * 19 18 15 44 44 H 1.09005 * 109.46943 * 66.04328 * 19 18 15 45 45 H 0.96994 * 120.00482 * 179.97438 * 23 22 20 46 46 H 1.09187 * 110.13280 * 125.76024 * 28 14 11 47 47 H 1.08820 * 110.64927 * 247.17653 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5736 1.2752 0.0006 6 1 3.8751 0.9936 -1.0407 7 6 4.1400 0.2066 0.9069 8 6 4.8204 0.7327 2.1683 9 1 5.3457 -0.0525 2.7271 10 6 5.7704 1.8811 1.7350 11 6 4.7238 3.0103 1.5126 12 1 5.2122 3.9968 1.4964 13 6 4.0179 2.7046 0.1982 14 7 3.8169 2.8708 2.6611 15 6 2.5220 3.5111 2.5345 16 1 1.8990 2.9383 1.8476 17 6 2.7057 4.9305 1.9937 18 6 1.8466 3.5714 3.9060 19 6 1.4852 2.1554 4.3592 20 6 0.6896 2.2247 5.6372 21 1 0.4639 3.1829 6.0815 22 6 0.2499 1.0649 6.2392 23 7 -0.4449 1.1253 7.3543 24 14 0.6410 -0.5924 5.4711 25 1 1.9300 -1.0958 6.0098 26 1 -0.4412 -1.5561 5.7956 27 1 0.7450 -0.4428 3.9974 28 6 3.7594 1.4511 3.0350 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 3.3308 -0.4822 1.2022 33 1 4.8646 -0.4012 0.3409 34 1 6.2916 1.6407 0.8100 35 1 6.4678 2.1435 2.5286 36 1 4.7184 2.9602 -0.6268 37 1 3.1670 3.3827 0.0498 38 1 1.7309 5.4044 1.8784 39 1 3.3109 5.5096 2.6910 40 1 3.2061 4.8888 1.0261 41 1 2.5288 4.0208 4.6276 42 1 0.9406 4.1736 3.8387 43 1 0.8906 1.6674 3.5870 44 1 2.3980 1.5846 4.5300 45 1 -0.7545 0.3094 7.7776 46 1 4.0036 1.3307 4.0924 47 1 2.7702 1.0423 2.8387 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:36 Heat of formation + Delta-G solvation = -80.023895 kcal Electronic energy + Delta-G solvation = -26822.186460 eV Core-core repulsion = 23390.937446 eV Total energy + Delta-G solvation = -3431.249014 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.29697 -39.64867 -36.49508 -35.89616 -33.10278 -32.54350 -31.55224 -29.54567 -28.98093 -27.59723 -25.23207 -24.98298 -23.74618 -21.88549 -20.96085 -20.06916 -19.58181 -18.43587 -17.23944 -17.07546 -16.77007 -16.41111 -15.86455 -15.21779 -14.40287 -14.23202 -13.75845 -13.63253 -13.43150 -13.24505 -13.09853 -12.73683 -12.60015 -12.44885 -12.30875 -12.22664 -12.10312 -11.85711 -11.42050 -11.22939 -11.07355 -10.97578 -10.86744 -10.71259 -10.65798 -10.35909 -10.22810 -10.20115 -10.02474 -9.76548 -9.53076 -9.27715 -8.88339 -8.43874 -7.54983 -5.97114 -3.92541 2.20632 2.68070 3.31815 3.38809 3.42199 4.17897 4.38841 4.49943 4.52367 4.57211 4.79742 4.99947 5.03091 5.11712 5.22288 5.24726 5.26188 5.37116 5.45556 5.52556 5.59797 5.61291 5.67163 5.69929 5.76259 5.83356 5.98122 6.01025 6.06614 6.14191 6.24614 6.31074 6.34442 6.43972 6.47738 6.50088 6.55644 6.66486 6.94000 7.09013 7.46035 7.51327 7.60883 7.76904 7.89732 7.94352 8.64685 9.09737 9.66452 11.16955 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013831 B = 0.006915 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.927019 B = 4048.149682 C = 4578.781301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.453 3.547 4 O -0.495 6.495 5 C -0.058 4.058 6 H 0.097 0.903 7 C -0.111 4.111 8 C -0.110 4.110 9 H 0.092 0.908 10 C -0.119 4.119 11 C 0.099 3.901 12 H 0.094 0.906 13 C -0.150 4.150 14 N -0.551 5.551 15 C 0.088 3.912 16 H 0.053 0.947 17 C -0.143 4.143 18 C -0.094 4.094 19 C -0.023 4.023 20 C -0.512 4.512 21 H 0.069 0.931 22 C 0.064 3.936 23 N -0.907 5.907 24 Si 0.876 3.124 25 H -0.276 1.276 26 H -0.290 1.290 27 H -0.267 1.267 28 C 0.063 3.937 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.003 0.997 44 H 0.029 0.971 45 H 0.261 0.739 46 H 0.079 0.921 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.259 -1.484 -18.279 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.296 3.704 4 O -0.382 6.382 5 C -0.077 4.077 6 H 0.115 0.885 7 C -0.148 4.148 8 C -0.129 4.129 9 H 0.111 0.889 10 C -0.157 4.157 11 C -0.009 4.009 12 H 0.112 0.888 13 C -0.189 4.189 14 N -0.277 5.277 15 C -0.019 4.019 16 H 0.071 0.929 17 C -0.201 4.201 18 C -0.132 4.132 19 C -0.060 4.060 20 C -0.551 4.551 21 H 0.088 0.912 22 C -0.136 4.136 23 N -0.547 5.547 24 Si 0.703 3.297 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.192 1.192 28 C -0.064 4.064 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.021 0.979 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.070 -1.058 -17.829 21.013 hybrid contribution -0.674 -1.350 -0.959 1.788 sum 10.396 -2.408 -18.788 21.607 Atomic orbital electron populations 1.23304 0.76075 1.03729 1.02837 1.86437 1.23596 1.33406 1.84095 1.24167 0.92597 0.81407 0.72234 1.90621 1.66942 1.36110 1.44505 1.20628 0.86808 0.97829 1.02411 0.88540 1.21443 1.01322 0.96124 0.95913 1.22584 0.96750 0.98180 0.95426 0.88938 1.22856 0.96759 0.95031 1.01082 1.22292 0.92590 0.98841 0.87186 0.88806 1.22069 1.03315 0.93619 0.99865 1.59826 1.16084 1.15117 1.36625 1.21448 0.88059 0.94013 0.98401 0.92932 1.21921 1.01391 0.96718 1.00037 1.21507 0.98401 0.99662 0.93678 1.19978 0.96547 0.93345 0.96167 1.21241 1.32689 0.94575 1.06553 0.91238 1.25023 0.94896 0.98973 0.94706 1.69926 1.38051 1.28089 1.18650 0.86837 0.78144 0.84375 0.80317 1.20159 1.21578 1.19186 1.22961 0.97529 0.86609 0.99308 0.88176 0.91265 0.92049 0.90469 0.91182 0.91023 0.90565 0.91659 0.88621 0.92686 0.92457 0.93222 0.92258 0.92719 0.97873 0.95258 0.92949 0.90253 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 101.05 1.07 1.50 16 2 O -0.36 -5.19 9.35 -39.25 -0.37 -5.56 16 3 C 0.45 6.79 6.94 36.36 0.25 7.04 16 4 O -0.49 -8.59 12.67 -18.75 -0.24 -8.83 16 5 C -0.06 -0.69 2.42 -93.37 -0.23 -0.91 16 6 H 0.10 0.90 8.28 -50.18 -0.42 0.48 16 7 C -0.11 -1.28 4.56 -27.84 -0.13 -1.41 16 8 C -0.11 -1.38 4.03 -88.73 -0.36 -1.74 16 9 H 0.09 1.05 8.21 -51.49 -0.42 0.63 16 10 C -0.12 -1.29 6.24 -24.20 -0.15 -1.44 16 11 C 0.10 1.25 2.83 -66.65 -0.19 1.06 16 12 H 0.09 1.10 7.94 -51.30 -0.41 0.69 16 13 C -0.15 -1.78 3.91 -28.11 -0.11 -1.89 16 14 N -0.55 -8.95 4.30 -217.30 -0.93 -9.88 16 15 C 0.09 1.59 1.72 -68.73 -0.12 1.47 16 16 H 0.05 1.04 4.46 -51.93 -0.23 0.81 16 17 C -0.14 -2.20 8.57 37.16 0.32 -1.88 16 18 C -0.09 -2.05 4.78 -26.73 -0.13 -2.17 16 19 C -0.02 -0.58 2.57 -27.88 -0.07 -0.66 16 20 C -0.51 -15.18 9.66 -34.44 -0.33 -15.51 16 21 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 22 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 23 N -0.91 -28.74 13.96 55.43 0.77 -27.97 16 24 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 28 C 0.06 1.06 4.11 -2.92 -0.01 1.05 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 31 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 32 H 0.08 1.02 6.75 -51.19 -0.35 0.68 16 33 H 0.07 0.63 8.24 -51.23 -0.42 0.21 16 34 H 0.07 0.63 7.90 -52.01 -0.41 0.22 16 35 H 0.08 0.82 8.13 -52.01 -0.42 0.40 16 36 H 0.06 0.61 8.31 -50.66 -0.42 0.18 16 37 H 0.10 1.34 4.07 -51.47 -0.21 1.13 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.68 5.33 -51.92 -0.28 0.40 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.05 1.21 8.13 -51.93 -0.42 0.79 16 43 H 0.00 0.08 6.92 -51.93 -0.36 -0.28 16 44 H 0.03 0.71 3.87 -51.93 -0.20 0.51 16 45 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 46 H 0.08 1.47 6.99 -51.82 -0.36 1.10 16 47 H 0.06 1.10 5.65 -52.03 -0.29 0.81 16 LS Contribution 341.20 15.07 5.14 5.14 Total: -1.00 -33.20 341.20 -8.32 -41.52 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.75 Total: 1.72 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -0.28 Total: -13.67 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.16 Total: -37.85 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.60 Total: -14.39 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.20 -8.32 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.501 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds