Wall clock time and date at job start Tue Mar 31 2020 07:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00118 * 2 1 4 4 O 1.20827 * 119.99658 * 359.97438 * 3 2 1 5 5 C 1.51429 * 120.00208 * 179.97438 * 3 2 1 6 6 H 1.12002 * 104.78744 * 74.09502 * 5 3 2 7 7 C 1.51133 * 109.71979 * 320.45070 * 5 3 2 8 8 C 1.52669 * 114.75943 * 247.86424 * 7 5 3 9 9 H 1.09769 * 112.79383 * 188.38417 * 8 7 5 10 10 C 1.55212 * 107.28453 * 312.48409 * 8 7 5 11 11 C 1.55562 * 99.50486 * 76.68545 * 10 8 7 12 12 H 1.10097 * 110.73818 * 162.59906 * 11 10 8 13 13 C 1.50981 * 110.08753 * 188.01753 * 5 3 2 14 14 N 1.47003 * 103.56223 * 42.69901 * 11 10 8 15 15 C 1.45014 * 116.15239 * 197.88517 * 14 11 10 16 16 H 1.08997 * 109.47557 * 73.74591 * 15 14 11 17 17 C 1.52998 * 109.46882 * 313.73964 * 15 14 11 18 18 C 1.53002 * 109.46943 * 193.74649 * 15 14 11 19 19 C 1.53006 * 109.46958 * 292.11879 * 18 15 14 20 20 C 1.50699 * 109.47210 * 186.03897 * 19 18 15 21 21 H 1.08003 * 119.99877 * 0.02562 * 20 19 18 22 22 C 1.37869 * 119.99925 * 180.02562 * 20 19 18 23 23 N 1.31523 * 120.00194 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00280 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47098 * 90.00109 * 24 22 20 26 26 H 1.48494 * 109.47418 * 210.00300 * 24 22 20 27 27 H 1.48493 * 109.47077 * 330.00256 * 24 22 20 28 28 C 1.46928 * 108.33810 * 328.31828 * 14 11 10 29 29 H 1.09004 * 109.47245 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47093 * 300.00436 * 1 2 3 31 31 H 1.08999 * 109.46717 * 60.00665 * 1 2 3 32 32 H 1.10291 * 109.10065 * 10.12416 * 7 5 3 33 33 H 1.10226 * 109.16663 * 125.52626 * 7 5 3 34 34 H 1.08860 * 111.52462 * 319.33713 * 10 8 7 35 35 H 1.08861 * 111.52790 * 193.99072 * 10 8 7 36 36 H 1.11206 * 107.80480 * 233.19084 * 13 5 3 37 37 H 1.09814 * 109.81158 * 346.15751 * 13 5 3 38 38 H 1.09000 * 109.47140 * 178.80410 * 17 15 14 39 39 H 1.08992 * 109.47634 * 298.80582 * 17 15 14 40 40 H 1.09007 * 109.47093 * 58.80555 * 17 15 14 41 41 H 1.09000 * 109.47534 * 52.11724 * 18 15 14 42 42 H 1.08995 * 109.47313 * 172.12437 * 18 15 14 43 43 H 1.08994 * 109.47198 * 306.04345 * 19 18 15 44 44 H 1.09005 * 109.46943 * 66.04328 * 19 18 15 45 45 H 0.96994 * 120.00482 * 179.97438 * 23 22 20 46 46 H 1.09187 * 110.13280 * 125.76024 * 28 14 11 47 47 H 1.08820 * 110.64927 * 247.17653 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5736 1.2752 0.0006 6 1 3.8751 0.9936 -1.0407 7 6 4.1400 0.2066 0.9069 8 6 4.8204 0.7327 2.1683 9 1 5.3457 -0.0525 2.7271 10 6 5.7704 1.8811 1.7350 11 6 4.7238 3.0103 1.5126 12 1 5.2122 3.9968 1.4964 13 6 4.0179 2.7046 0.1982 14 7 3.8169 2.8708 2.6611 15 6 2.5220 3.5111 2.5345 16 1 1.8990 2.9383 1.8476 17 6 2.7057 4.9305 1.9937 18 6 1.8466 3.5714 3.9060 19 6 1.4852 2.1554 4.3592 20 6 0.6896 2.2247 5.6372 21 1 0.4639 3.1829 6.0815 22 6 0.2499 1.0649 6.2392 23 7 -0.4449 1.1253 7.3543 24 14 0.6410 -0.5924 5.4711 25 1 1.9300 -1.0958 6.0098 26 1 -0.4412 -1.5561 5.7956 27 1 0.7450 -0.4428 3.9974 28 6 3.7594 1.4511 3.0350 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 3.3308 -0.4822 1.2022 33 1 4.8646 -0.4012 0.3409 34 1 6.2916 1.6407 0.8100 35 1 6.4678 2.1435 2.5286 36 1 4.7184 2.9602 -0.6268 37 1 3.1670 3.3827 0.0498 38 1 1.7309 5.4044 1.8784 39 1 3.3109 5.5096 2.6910 40 1 3.2061 4.8888 1.0261 41 1 2.5288 4.0208 4.6276 42 1 0.9406 4.1736 3.8387 43 1 0.8906 1.6674 3.5870 44 1 2.3980 1.5846 4.5300 45 1 -0.7545 0.3094 7.7776 46 1 4.0036 1.3307 4.0924 47 1 2.7702 1.0423 2.8387 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:35 Heat of formation + Delta-G solvation = -101.550758 kcal Electronic energy + Delta-G solvation = -26823.119935 eV Core-core repulsion = 23390.937446 eV Total energy + Delta-G solvation = -3432.182489 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.36000 -40.76828 -37.62701 -37.31758 -35.08921 -33.65724 -33.10831 -31.08483 -30.12322 -28.60422 -27.11729 -26.15074 -24.70666 -23.38429 -22.14146 -21.70480 -20.86343 -19.52698 -18.77657 -18.32138 -18.12418 -17.76195 -16.99903 -16.39746 -16.35365 -15.54270 -15.10845 -14.88283 -14.65225 -14.54396 -14.40520 -14.17700 -14.07209 -13.63408 -13.61147 -13.40503 -13.28065 -13.01310 -12.94014 -12.83824 -12.55173 -12.26052 -12.11163 -12.03310 -11.87517 -11.81478 -11.74774 -11.37464 -11.31745 -11.13769 -11.01963 -10.98947 -10.91307 -10.68406 -8.81928 -8.33664 -6.36210 1.12953 1.26246 1.28725 1.40988 1.70729 2.30435 3.00543 3.03136 3.47000 3.61138 3.67306 3.80627 4.07469 4.11848 4.12644 4.19324 4.20313 4.25069 4.30031 4.40950 4.48857 4.57705 4.62551 4.67698 4.71613 4.78727 4.79753 4.85138 4.91992 4.94374 5.05259 5.10347 5.13480 5.22680 5.25261 5.27336 5.32088 5.38854 5.42505 5.49265 5.55226 5.59524 5.65482 6.25727 6.36876 6.62186 6.68757 6.70426 7.27165 8.83786 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013831 B = 0.006915 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.927019 B = 4048.149682 C = 4578.781301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.443 3.557 4 O -0.529 6.529 5 C -0.060 4.060 6 H 0.136 0.864 7 C -0.108 4.108 8 C -0.105 4.105 9 H 0.107 0.893 10 C -0.105 4.105 11 C 0.091 3.909 12 H 0.108 0.892 13 C -0.151 4.151 14 N -0.561 5.561 15 C 0.099 3.901 16 H 0.038 0.962 17 C -0.135 4.135 18 C -0.091 4.091 19 C -0.007 4.007 20 C -0.533 4.533 21 H 0.026 0.974 22 C 0.005 3.995 23 N -0.951 5.951 24 Si 0.948 3.052 25 H -0.257 1.257 26 H -0.280 1.280 27 H -0.257 1.257 28 C 0.058 3.942 29 H 0.130 0.870 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.037 0.963 43 H -0.010 1.010 44 H 0.041 0.959 45 H 0.266 0.734 46 H 0.052 0.948 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.459 -3.116 -21.358 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.288 3.712 4 O -0.418 6.418 5 C -0.079 4.079 6 H 0.153 0.847 7 C -0.146 4.146 8 C -0.124 4.124 9 H 0.125 0.875 10 C -0.142 4.142 11 C -0.016 4.016 12 H 0.126 0.874 13 C -0.189 4.189 14 N -0.287 5.287 15 C -0.009 4.009 16 H 0.056 0.944 17 C -0.193 4.193 18 C -0.129 4.129 19 C -0.044 4.044 20 C -0.571 4.571 21 H 0.044 0.956 22 C -0.191 4.191 23 N -0.592 5.592 24 Si 0.771 3.229 25 H -0.182 1.182 26 H -0.205 1.205 27 H -0.181 1.181 28 C -0.069 4.069 29 H 0.148 0.852 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.009 0.991 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 14.289 -2.683 -20.916 25.472 hybrid contribution -1.748 -0.760 0.088 1.908 sum 12.541 -3.443 -20.828 24.555 Atomic orbital electron populations 1.23442 0.75687 1.05397 1.01843 1.86444 1.24158 1.33494 1.83886 1.25035 0.94132 0.80931 0.71102 1.90606 1.67987 1.37092 1.46128 1.20858 0.84167 0.98130 1.04722 0.84661 1.21437 1.01469 0.95906 0.95751 1.22583 0.95825 0.98851 0.95162 0.87534 1.22861 0.95799 0.92816 1.02764 1.22523 0.92280 1.00556 0.86205 0.87426 1.22034 1.03216 0.93140 1.00546 1.59741 1.15125 1.14663 1.39160 1.21160 0.88848 0.95833 0.95078 0.94423 1.21848 1.01492 0.94723 1.01208 1.21426 0.97982 0.97222 0.96265 1.19826 0.95796 0.95463 0.93297 1.21583 1.33833 0.93151 1.08491 0.95567 1.25994 0.94414 1.03607 0.95089 1.70076 1.39180 1.29679 1.20278 0.85698 0.78850 0.78587 0.79813 1.18179 1.20515 1.18088 1.22826 0.97485 0.87672 0.98951 0.85222 0.94360 0.90953 0.92645 0.87172 0.87414 0.90474 0.87693 0.90969 0.93321 0.91967 0.90818 0.93126 0.94452 0.99135 0.94121 0.92479 0.92958 0.95948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.94 16 2 O -0.36 -10.11 9.35 -51.39 -0.48 -10.59 16 3 C 0.44 12.71 6.94 71.47 0.50 13.20 16 4 O -0.53 -18.38 12.67 21.96 0.28 -18.10 16 5 C -0.06 -1.21 2.42 -12.57 -0.03 -1.24 16 6 H 0.14 1.73 8.28 -0.75 -0.01 1.73 16 7 C -0.11 -2.08 4.56 29.88 0.14 -1.94 16 8 C -0.11 -2.28 4.03 -9.57 -0.04 -2.32 16 9 H 0.11 2.03 8.21 -1.98 -0.02 2.01 16 10 C -0.10 -1.76 6.24 32.24 0.20 -1.56 16 11 C 0.09 1.98 2.83 45.54 0.13 2.11 16 12 H 0.11 2.07 7.94 -1.80 -0.01 2.05 16 13 C -0.15 -2.98 3.91 29.70 0.12 -2.87 16 14 N -0.56 -17.66 4.30 -841.42 -3.62 -21.28 16 15 C 0.10 3.61 1.72 45.27 0.08 3.69 16 16 H 0.04 1.53 4.46 -2.39 -0.01 1.52 16 17 C -0.14 -4.08 8.57 71.98 0.62 -3.46 16 18 C -0.09 -4.15 4.78 30.60 0.15 -4.00 16 19 C -0.01 -0.36 2.57 29.85 0.08 -0.28 16 20 C -0.53 -33.35 9.66 25.60 0.25 -33.10 16 21 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 22 C 0.01 0.33 5.47 84.65 0.46 0.79 16 23 N -0.95 -62.41 13.96 21.45 0.30 -62.11 16 24 Si 0.95 46.76 27.47 68.60 1.88 48.65 16 25 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 26 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 27 H -0.26 -12.14 6.54 99.48 0.65 -11.49 16 28 C 0.06 1.92 4.11 86.87 0.36 2.27 16 29 H 0.13 2.38 8.14 -2.38 -0.02 2.36 16 30 H 0.04 1.18 8.13 -2.39 -0.02 1.16 16 31 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 32 H 0.05 1.33 6.75 -1.69 -0.01 1.32 16 33 H 0.11 1.30 8.24 -1.73 -0.01 1.28 16 34 H 0.11 1.12 7.90 -2.46 -0.02 1.10 16 35 H 0.08 1.32 8.13 -2.46 -0.02 1.30 16 36 H 0.10 1.30 8.31 -1.19 -0.01 1.29 16 37 H 0.07 1.83 4.07 -1.95 -0.01 1.83 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 1.87 5.33 -2.38 -0.01 1.85 16 41 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.04 1.77 8.13 -2.39 -0.02 1.75 16 43 H -0.01 -0.52 6.92 -2.39 -0.02 -0.54 16 44 H 0.04 2.04 3.87 -2.38 -0.01 2.03 16 45 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 46 H 0.05 1.95 6.99 -2.29 -0.02 1.94 16 47 H 0.02 0.88 5.65 -2.48 -0.01 0.87 16 Total: -1.00 -77.76 341.20 3.49 -74.27 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.94 Total: 15.93 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 4.19 Total: -26.76 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -3.32 Total: -83.39 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.20 Total: -28.69 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.88 Total: 48.65 kcal Total: -77.76 3.49 -74.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.282 kcal (2) G-P(sol) polarization free energy of solvation -77.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds