Wall clock time and date at job start Tue Mar 31 2020 07:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99508 * 2 1 4 4 O 1.20827 * 120.00263 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99492 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.32723 * 300.35554 * 5 3 2 7 7 C 1.53032 * 109.32600 * 60.00002 * 5 3 2 8 8 C 1.53958 * 108.83613 * 175.71003 * 7 5 3 9 9 H 1.09002 * 112.96604 * 168.19588 * 8 7 5 10 10 C 1.55418 * 106.43392 * 293.87102 * 8 7 5 11 11 C 1.55171 * 100.42158 * 73.29318 * 10 8 7 12 12 H 1.09001 * 113.05845 * 163.02833 * 11 10 8 13 13 C 1.52988 * 109.32433 * 180.88649 * 5 3 2 14 14 N 1.48214 * 104.22131 * 40.60317 * 11 10 8 15 15 C 1.46895 * 110.99909 * 211.58425 * 14 11 10 16 16 H 1.09000 * 109.47215 * 34.32297 * 15 14 11 17 17 C 1.52994 * 109.47332 * 154.32535 * 15 14 11 18 18 C 1.53003 * 109.46777 * 274.32653 * 15 14 11 19 19 C 1.52999 * 109.47173 * 65.95576 * 18 15 14 20 20 C 1.50702 * 109.46835 * 174.25895 * 19 18 15 21 21 H 1.07995 * 120.00319 * 359.97438 * 20 19 18 22 22 C 1.37884 * 119.99697 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99834 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00167 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.46926 * 90.00464 * 24 22 20 26 26 H 1.48495 * 109.47085 * 210.00475 * 24 22 20 27 27 H 1.48507 * 109.47133 * 330.00707 * 24 22 20 28 28 C 1.47502 * 108.14827 * 333.57237 * 14 11 10 29 29 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47243 * 299.99857 * 1 2 3 31 31 H 1.08997 * 109.47246 * 60.00228 * 1 2 3 32 32 H 1.08994 * 109.57658 * 55.90394 * 7 5 3 33 33 H 1.08999 * 109.67648 * 295.57572 * 7 5 3 34 34 H 1.08994 * 111.21914 * 315.50510 * 10 8 7 35 35 H 1.08991 * 111.22238 * 191.08762 * 10 8 7 36 36 H 1.08998 * 109.53480 * 64.70161 * 13 5 3 37 37 H 1.09008 * 109.53224 * 304.47659 * 13 5 3 38 38 H 1.09002 * 109.47292 * 49.24319 * 17 15 14 39 39 H 1.09006 * 109.46997 * 169.24091 * 17 15 14 40 40 H 1.08996 * 109.47140 * 289.24213 * 17 15 14 41 41 H 1.09004 * 109.46860 * 185.95181 * 18 15 14 42 42 H 1.08997 * 109.46881 * 305.95342 * 18 15 14 43 43 H 1.08994 * 109.47033 * 294.25264 * 19 18 15 44 44 H 1.08993 * 109.47321 * 54.25732 * 19 18 15 45 45 H 0.97000 * 119.99866 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.98630 * 120.39333 * 28 14 11 47 47 H 1.08998 * 109.98374 * 241.64723 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9534 0.7749 0.8884 7 6 4.1103 0.5801 -1.2497 8 6 5.6387 0.7606 -1.2934 9 1 6.1208 0.1262 -2.0371 10 6 5.8963 2.2793 -1.5002 11 6 5.5287 2.8205 -0.0931 12 1 5.9086 3.8255 0.0904 13 6 3.9963 2.7429 0.0228 14 7 6.0976 1.8207 0.8416 15 6 5.2843 1.7171 2.0605 16 1 4.2340 1.8673 1.8104 17 6 5.4678 0.3302 2.6797 18 6 5.7279 2.7855 3.0618 19 6 5.4071 4.1731 2.5028 20 6 5.7134 5.2176 3.5450 21 1 6.0980 4.9214 4.5097 22 6 5.5017 6.5515 3.2672 23 7 5.7686 7.4631 4.1769 24 14 4.8359 7.0639 1.5988 25 1 3.3520 7.0941 1.6461 26 1 5.3478 8.4148 1.2551 27 1 5.2785 6.0899 0.5688 28 6 6.1676 0.5245 0.1411 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.6643 1.0261 -2.1386 33 1 3.8689 -0.4822 -1.2136 34 1 5.2380 2.6905 -2.2654 35 1 6.9424 2.4734 -1.7367 36 1 3.6779 3.2019 0.9587 37 1 3.5403 3.2690 -0.8160 38 1 6.5313 0.1031 2.7537 39 1 5.0229 0.3148 3.6747 40 1 4.9799 -0.4154 2.0519 41 1 5.1990 2.6423 4.0041 42 1 6.8013 2.7013 3.2312 43 1 6.0133 4.3564 1.6157 44 1 4.3510 4.2229 2.2379 45 1 5.6199 8.4014 3.9813 46 1 7.1997 0.1759 0.1050 47 1 5.5446 -0.2093 0.6524 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:39 Heat of formation + Delta-G solvation = -50.711234 kcal Electronic energy + Delta-G solvation = -26450.080707 eV Core-core repulsion = 23020.102785 eV Total energy + Delta-G solvation = -3429.977922 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.94907 -40.08564 -36.60000 -35.57131 -33.08135 -32.51548 -31.48580 -30.46609 -28.31834 -27.72328 -25.82164 -24.46132 -23.85568 -22.03768 -20.81746 -20.26995 -19.53056 -19.08151 -17.77730 -17.06303 -16.51398 -16.43224 -15.77372 -15.36651 -14.98694 -14.21993 -13.83192 -13.67491 -13.49803 -13.18458 -12.95738 -12.75798 -12.63418 -12.59526 -12.47547 -12.42126 -12.07838 -11.82238 -11.42633 -11.28698 -11.17967 -11.03767 -10.95131 -10.81027 -10.71810 -10.68693 -10.33980 -10.21390 -10.09782 -9.73085 -9.45250 -9.36053 -8.99245 -8.42107 -7.82858 -5.96122 -3.92113 2.12913 2.58179 3.37098 3.44282 3.45721 4.14510 4.37369 4.48866 4.52357 4.54979 4.87858 4.90332 4.91662 4.98489 5.02587 5.15000 5.28396 5.30186 5.32443 5.35884 5.39554 5.45966 5.50065 5.57759 5.61930 5.67518 5.87664 5.95347 5.97625 6.05467 6.13579 6.18791 6.25090 6.26441 6.32658 6.39240 6.45346 6.53293 6.77166 7.05551 7.30170 7.42306 7.46841 7.66481 7.66963 7.91406 8.64297 9.10354 9.67504 11.17782 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.005852 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.571949 B = 4783.945662 C = 5313.209246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.462 3.538 4 O -0.500 6.500 5 C -0.104 4.104 6 H 0.130 0.870 7 C -0.104 4.104 8 C -0.110 4.110 9 H 0.095 0.905 10 C -0.125 4.125 11 C 0.073 3.927 12 H 0.120 0.880 13 C -0.143 4.143 14 N -0.508 5.508 15 C 0.042 3.958 16 H 0.066 0.934 17 C -0.158 4.158 18 C -0.089 4.089 19 C -0.017 4.017 20 C -0.515 4.515 21 H 0.069 0.931 22 C 0.065 3.935 23 N -0.907 5.907 24 Si 0.875 3.125 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.262 1.262 28 C 0.027 3.973 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.028 0.972 44 H 0.006 0.994 45 H 0.261 0.739 46 H 0.074 0.926 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.988 -19.021 -12.716 23.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.305 3.695 4 O -0.386 6.386 5 C -0.122 4.122 6 H 0.147 0.853 7 C -0.142 4.142 8 C -0.129 4.129 9 H 0.113 0.887 10 C -0.163 4.163 11 C -0.035 4.035 12 H 0.138 0.862 13 C -0.181 4.181 14 N -0.233 5.233 15 C -0.065 4.065 16 H 0.083 0.917 17 C -0.215 4.215 18 C -0.127 4.127 19 C -0.054 4.054 20 C -0.553 4.553 21 H 0.087 0.913 22 C -0.135 4.135 23 N -0.547 5.547 24 Si 0.703 3.297 25 H -0.204 1.204 26 H -0.216 1.216 27 H -0.187 1.187 28 C -0.101 4.101 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.046 0.954 44 H 0.024 0.976 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.735 -18.385 -12.496 22.728 hybrid contribution -1.573 0.325 -0.963 1.873 sum -6.309 -18.060 -13.459 23.390 Atomic orbital electron populations 1.23253 0.76648 1.03492 1.02609 1.86506 1.23220 1.33735 1.84315 1.23947 0.92123 0.81247 0.72200 1.90689 1.67089 1.36298 1.44571 1.21906 0.86727 1.00441 1.03143 0.85259 1.21792 0.96034 1.00416 0.95920 1.22794 0.94350 0.97457 0.98299 0.88695 1.22991 1.02022 0.94365 0.96872 1.23319 0.90919 0.98437 0.90779 0.86218 1.22409 0.97965 0.92712 1.05010 1.63870 1.49922 1.04861 1.04617 1.22545 0.96836 0.96034 0.91132 0.91650 1.22187 1.02627 0.96065 1.00593 1.21464 1.00995 0.94413 0.95828 1.19803 0.95428 0.92748 0.97418 1.21214 1.42960 0.90322 1.00811 0.91258 1.25022 0.95172 0.96714 0.96592 1.69924 1.49671 1.00946 1.34133 0.86852 0.79482 0.77862 0.85506 1.20446 1.21572 1.18706 1.23297 1.01372 0.93029 0.92352 0.88197 0.91827 0.92040 0.91454 0.90695 0.90908 0.90518 0.88900 0.90682 0.91524 0.91935 0.93014 0.92783 0.92100 0.95380 0.97583 0.92926 0.90815 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.38 10.49 -39.25 -0.41 -4.79 16 3 C 0.46 6.64 7.25 36.01 0.26 6.90 16 4 O -0.50 -8.75 15.66 -18.75 -0.29 -9.04 16 5 C -0.10 -1.36 1.72 -91.76 -0.16 -1.52 16 6 H 0.13 1.69 2.73 -51.93 -0.14 1.55 16 7 C -0.10 -1.09 4.69 -26.22 -0.12 -1.21 16 8 C -0.11 -1.12 4.32 -87.94 -0.38 -1.50 16 9 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 10 C -0.12 -1.50 6.17 -24.30 -0.15 -1.65 16 11 C 0.07 1.13 3.19 -65.38 -0.21 0.92 16 12 H 0.12 2.20 5.84 -51.93 -0.30 1.90 16 13 C -0.14 -2.25 3.40 -26.28 -0.09 -2.34 16 14 N -0.51 -7.62 4.98 -214.19 -1.07 -8.68 16 15 C 0.04 0.66 1.50 -67.72 -0.10 0.56 16 16 H 0.07 1.07 3.30 -51.93 -0.17 0.90 16 17 C -0.16 -2.01 7.89 37.15 0.29 -1.71 16 18 C -0.09 -1.78 4.82 -26.73 -0.13 -1.91 16 19 C -0.02 -0.41 2.81 -27.88 -0.08 -0.49 16 20 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 21 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 22 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 23 N -0.91 -28.66 13.96 55.43 0.77 -27.89 16 24 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 25 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 28 C 0.03 0.31 5.20 -2.60 -0.01 0.30 16 29 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.70 7.98 -51.93 -0.41 0.28 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.73 4.49 -51.93 -0.23 1.50 16 37 H 0.07 1.19 7.82 -51.92 -0.41 0.78 16 38 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 39 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 40 H 0.05 0.56 5.47 -51.93 -0.28 0.27 16 41 H 0.05 1.09 8.09 -51.93 -0.42 0.67 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.03 0.67 4.33 -51.93 -0.22 0.44 16 44 H 0.01 0.15 5.57 -51.93 -0.29 -0.14 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.74 3.88 -51.93 -0.20 0.54 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -32.87 336.72 -8.13 -41.00 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.30 Total: 2.40 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -0.24 Total: -15.69 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.29 Total: -36.57 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.71 Total: -13.83 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.87 -8.13 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.707 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds