Wall clock time and date at job start Tue Mar 31 2020 07:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99508 * 2 1 4 4 O 1.20827 * 120.00263 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99492 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.32723 * 300.35554 * 5 3 2 7 7 C 1.53032 * 109.32600 * 60.00002 * 5 3 2 8 8 C 1.53958 * 108.83613 * 175.71003 * 7 5 3 9 9 H 1.09002 * 112.96604 * 168.19588 * 8 7 5 10 10 C 1.55418 * 106.43392 * 293.87102 * 8 7 5 11 11 C 1.55171 * 100.42158 * 73.29318 * 10 8 7 12 12 H 1.09001 * 113.05845 * 163.02833 * 11 10 8 13 13 C 1.52988 * 109.32433 * 180.88649 * 5 3 2 14 14 N 1.48214 * 104.22131 * 40.60317 * 11 10 8 15 15 C 1.46895 * 110.99909 * 211.58425 * 14 11 10 16 16 H 1.09000 * 109.47215 * 34.32297 * 15 14 11 17 17 C 1.52994 * 109.47332 * 154.32535 * 15 14 11 18 18 C 1.53003 * 109.46777 * 274.32653 * 15 14 11 19 19 C 1.52999 * 109.47173 * 65.95576 * 18 15 14 20 20 C 1.50702 * 109.46835 * 174.25895 * 19 18 15 21 21 H 1.07995 * 120.00319 * 359.97438 * 20 19 18 22 22 C 1.37884 * 119.99697 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99834 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00167 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.46926 * 90.00464 * 24 22 20 26 26 H 1.48495 * 109.47085 * 210.00475 * 24 22 20 27 27 H 1.48507 * 109.47133 * 330.00707 * 24 22 20 28 28 C 1.47502 * 108.14827 * 333.57237 * 14 11 10 29 29 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47243 * 299.99857 * 1 2 3 31 31 H 1.08997 * 109.47246 * 60.00228 * 1 2 3 32 32 H 1.08994 * 109.57658 * 55.90394 * 7 5 3 33 33 H 1.08999 * 109.67648 * 295.57572 * 7 5 3 34 34 H 1.08994 * 111.21914 * 315.50510 * 10 8 7 35 35 H 1.08991 * 111.22238 * 191.08762 * 10 8 7 36 36 H 1.08998 * 109.53480 * 64.70161 * 13 5 3 37 37 H 1.09008 * 109.53224 * 304.47659 * 13 5 3 38 38 H 1.09002 * 109.47292 * 49.24319 * 17 15 14 39 39 H 1.09006 * 109.46997 * 169.24091 * 17 15 14 40 40 H 1.08996 * 109.47140 * 289.24213 * 17 15 14 41 41 H 1.09004 * 109.46860 * 185.95181 * 18 15 14 42 42 H 1.08997 * 109.46881 * 305.95342 * 18 15 14 43 43 H 1.08994 * 109.47033 * 294.25264 * 19 18 15 44 44 H 1.08993 * 109.47321 * 54.25732 * 19 18 15 45 45 H 0.97000 * 119.99866 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.98630 * 120.39333 * 28 14 11 47 47 H 1.08998 * 109.98374 * 241.64723 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9534 0.7749 0.8884 7 6 4.1103 0.5801 -1.2497 8 6 5.6387 0.7606 -1.2934 9 1 6.1208 0.1262 -2.0371 10 6 5.8963 2.2793 -1.5002 11 6 5.5287 2.8205 -0.0931 12 1 5.9086 3.8255 0.0904 13 6 3.9963 2.7429 0.0228 14 7 6.0976 1.8207 0.8416 15 6 5.2843 1.7171 2.0605 16 1 4.2340 1.8673 1.8104 17 6 5.4678 0.3302 2.6797 18 6 5.7279 2.7855 3.0618 19 6 5.4071 4.1731 2.5028 20 6 5.7134 5.2176 3.5450 21 1 6.0980 4.9214 4.5097 22 6 5.5017 6.5515 3.2672 23 7 5.7686 7.4631 4.1769 24 14 4.8359 7.0639 1.5988 25 1 3.3520 7.0941 1.6461 26 1 5.3478 8.4148 1.2551 27 1 5.2785 6.0899 0.5688 28 6 6.1676 0.5245 0.1411 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.6643 1.0261 -2.1386 33 1 3.8689 -0.4822 -1.2136 34 1 5.2380 2.6905 -2.2654 35 1 6.9424 2.4734 -1.7367 36 1 3.6779 3.2019 0.9587 37 1 3.5403 3.2690 -0.8160 38 1 6.5313 0.1031 2.7537 39 1 5.0229 0.3148 3.6747 40 1 4.9799 -0.4154 2.0519 41 1 5.1990 2.6423 4.0041 42 1 6.8013 2.7013 3.2312 43 1 6.0133 4.3564 1.6157 44 1 4.3510 4.2229 2.2379 45 1 5.6199 8.4014 3.9813 46 1 7.1997 0.1759 0.1050 47 1 5.5446 -0.2093 0.6524 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:38 Heat of formation + Delta-G solvation = -72.409759 kcal Electronic energy + Delta-G solvation = -26451.021625 eV Core-core repulsion = 23020.102785 eV Total energy + Delta-G solvation = -3430.918840 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.01639 -41.14272 -37.65007 -36.92128 -34.97685 -33.75710 -32.71133 -32.06509 -29.43083 -28.59212 -27.38624 -25.70199 -24.84980 -23.47137 -21.96459 -21.83140 -20.67662 -20.08421 -19.16691 -18.44053 -18.02539 -17.49705 -16.97604 -16.54926 -16.17595 -16.04036 -14.94259 -14.78650 -14.59620 -14.56350 -14.37417 -14.19177 -13.93927 -13.74283 -13.64900 -13.41990 -13.14391 -13.02428 -12.93805 -12.90548 -12.49369 -12.22922 -12.13018 -12.06232 -11.89614 -11.78811 -11.74865 -11.55525 -11.32973 -11.18425 -11.05646 -11.01360 -10.97593 -10.62169 -8.98074 -8.30686 -6.31784 1.05020 1.30528 1.31311 1.43172 1.64281 2.32913 3.04616 3.05174 3.39267 3.51367 3.62545 3.86110 3.98650 4.05026 4.10175 4.15282 4.19139 4.26459 4.27045 4.31003 4.46027 4.48058 4.57862 4.61483 4.66448 4.67037 4.78096 4.89099 4.96847 5.01731 5.03941 5.07091 5.07902 5.16685 5.23219 5.25354 5.27885 5.31520 5.35311 5.41616 5.61222 5.69301 5.73572 6.19862 6.30719 6.35988 6.62132 6.76487 7.31679 8.86665 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.005852 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.571949 B = 4783.945662 C = 5313.209246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.464 3.536 4 O -0.541 6.541 5 C -0.099 4.099 6 H 0.133 0.867 7 C -0.099 4.099 8 C -0.094 4.094 9 H 0.130 0.870 10 C -0.120 4.120 11 C 0.065 3.935 12 H 0.082 0.918 13 C -0.138 4.138 14 N -0.524 5.524 15 C 0.050 3.950 16 H 0.061 0.939 17 C -0.152 4.152 18 C -0.085 4.085 19 C -0.006 4.006 20 C -0.527 4.527 21 H 0.029 0.971 22 C 0.006 3.994 23 N -0.953 5.953 24 Si 0.940 3.060 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.239 1.239 28 C 0.025 3.975 29 H 0.138 0.862 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.042 0.958 42 H 0.049 0.951 43 H 0.032 0.968 44 H 0.004 0.996 45 H 0.265 0.735 46 H 0.085 0.915 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 -22.328 -15.735 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.309 3.691 4 O -0.431 6.431 5 C -0.117 4.117 6 H 0.151 0.849 7 C -0.136 4.136 8 C -0.113 4.113 9 H 0.148 0.852 10 C -0.158 4.158 11 C -0.043 4.043 12 H 0.100 0.900 13 C -0.176 4.176 14 N -0.248 5.248 15 C -0.058 4.058 16 H 0.078 0.922 17 C -0.209 4.209 18 C -0.123 4.123 19 C -0.043 4.043 20 C -0.566 4.566 21 H 0.047 0.953 22 C -0.190 4.190 23 N -0.595 5.595 24 Si 0.764 3.236 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.162 1.162 28 C -0.102 4.102 29 H 0.156 0.844 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.022 0.978 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.056 -21.739 -15.522 27.186 hybrid contribution -1.478 1.355 0.099 2.008 sum -6.534 -20.384 -15.423 26.383 Atomic orbital electron populations 1.23570 0.75000 1.05891 1.02264 1.86491 1.24791 1.32237 1.83611 1.24191 0.92589 0.81277 0.71087 1.90677 1.68013 1.37741 1.46662 1.21853 0.86142 0.98728 1.04972 0.84941 1.21839 0.96049 1.01463 0.94278 1.22817 0.94151 0.96231 0.98087 0.85246 1.22972 1.02443 0.95859 0.94491 1.23173 0.90521 0.97204 0.93394 0.89996 1.22266 0.98184 0.94592 1.02596 1.63739 1.49609 1.06832 1.04663 1.22340 0.96434 0.96184 0.90822 0.92171 1.22140 1.03333 0.94469 1.00916 1.21367 1.00114 0.94063 0.96784 1.19682 0.95148 0.93493 0.95972 1.21632 1.42321 0.92028 1.00574 0.95297 1.25935 0.95525 0.96717 1.00806 1.70072 1.51324 1.01485 1.36589 0.85809 0.78627 0.78142 0.81013 1.20275 1.20737 1.16229 1.23418 1.02550 0.91210 0.93027 0.84400 0.92687 0.92003 0.91007 0.88178 0.90105 0.90065 0.92694 0.91403 0.91080 0.91989 0.90070 0.93886 0.93265 0.94947 0.97804 0.92666 0.89705 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.61 16 2 O -0.36 -7.62 10.49 -51.38 -0.54 -8.16 16 3 C 0.46 12.57 7.25 71.24 0.52 13.08 16 4 O -0.54 -18.83 15.66 21.96 0.34 -18.49 16 5 C -0.10 -2.36 1.72 -11.53 -0.02 -2.38 16 6 H 0.13 3.09 2.73 -2.39 -0.01 3.08 16 7 C -0.10 -1.63 4.69 30.93 0.15 -1.49 16 8 C -0.09 -1.47 4.32 -9.06 -0.04 -1.51 16 9 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 10 C -0.12 -2.52 6.17 32.17 0.20 -2.33 16 11 C 0.07 1.95 3.19 45.70 0.15 2.09 16 12 H 0.08 3.04 5.84 -2.39 -0.01 3.03 16 13 C -0.14 -4.27 3.40 30.88 0.11 -4.16 16 14 N -0.52 -14.81 4.98 -831.55 -4.14 -18.95 16 15 C 0.05 1.54 1.50 44.92 0.07 1.61 16 16 H 0.06 1.95 3.30 -2.39 -0.01 1.94 16 17 C -0.15 -3.49 7.89 71.98 0.57 -2.92 16 18 C -0.09 -3.51 4.82 30.60 0.15 -3.36 16 19 C -0.01 -0.30 2.81 29.85 0.08 -0.21 16 20 C -0.53 -32.15 9.66 25.60 0.25 -31.91 16 21 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 22 C 0.01 0.39 5.47 84.66 0.46 0.86 16 23 N -0.95 -62.60 13.96 21.45 0.30 -62.30 16 24 Si 0.94 47.19 27.47 68.60 1.88 49.08 16 25 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 27 H -0.24 -10.99 6.54 99.48 0.65 -10.34 16 28 C 0.02 0.47 5.20 86.77 0.45 0.92 16 29 H 0.14 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.05 0.99 8.13 -2.38 -0.02 0.97 16 31 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 32 H 0.07 1.18 7.98 -2.39 -0.02 1.16 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.58 7.75 -2.39 -0.02 1.56 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 2.10 4.49 -2.39 -0.01 2.09 16 37 H 0.07 2.14 7.82 -2.38 -0.02 2.12 16 38 H 0.07 1.59 8.04 -2.39 -0.02 1.57 16 39 H 0.06 1.44 8.07 -2.38 -0.02 1.42 16 40 H 0.08 1.41 5.47 -2.39 -0.01 1.40 16 41 H 0.04 1.81 8.09 -2.39 -0.02 1.79 16 42 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.03 1.58 4.33 -2.39 -0.01 1.57 16 44 H 0.00 0.19 5.57 -2.39 -0.01 0.18 16 45 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 46 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.08 1.37 3.88 -2.39 -0.01 1.36 16 Total: -1.00 -76.01 336.72 3.04 -72.97 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.92 Total: 15.94 kcal Atomic # 6 Polarization: -34.37 SS G_CDS: 4.28 Total: -30.09 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -3.84 Total: -81.25 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.19 Total: -26.65 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.88 Total: 49.08 kcal Total: -76.01 3.04 -72.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.557 kcal (2) G-P(sol) polarization free energy of solvation -76.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds