Wall clock time and date at job start Tue Mar 31 2020 06:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35019 * 119.99878 * 2 1 4 4 C 1.41189 * 120.00114 * 184.94178 * 3 2 1 5 5 O 1.21710 * 120.00062 * 5.34518 * 4 3 2 6 6 O 1.34971 * 119.99871 * 185.34836 * 4 3 2 7 7 C 1.42904 * 116.99802 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.46773 * 90.00038 * 7 6 4 9 9 C 1.52994 * 109.47482 * 210.00094 * 7 6 4 10 10 N 1.36576 * 120.00207 * 179.97438 * 2 1 3 11 11 C 1.46500 * 120.00349 * 302.03886 * 10 2 1 12 12 C 1.52996 * 109.47265 * 275.27499 * 11 10 2 13 13 C 1.53002 * 109.47528 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.46972 * 59.99624 * 13 12 11 15 15 C 1.50691 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99647 * 120.00114 * 15 14 13 17 17 C 1.37875 * 120.00633 * 300.00067 * 15 14 13 18 18 N 1.31519 * 119.99748 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00506 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46817 * 90.00307 * 19 17 15 21 21 H 1.48500 * 109.47436 * 210.00360 * 19 17 15 22 22 H 1.48505 * 109.46936 * 330.00662 * 19 17 15 23 23 C 1.52996 * 109.47301 * 300.00515 * 14 13 12 24 24 C 1.53002 * 109.47528 * 59.99825 * 23 14 13 25 25 H 1.09004 * 109.47647 * 270.00081 * 1 2 3 26 26 H 1.08994 * 109.47218 * 30.00276 * 1 2 3 27 27 H 1.09005 * 109.46862 * 150.00290 * 1 2 3 28 28 H 1.08004 * 119.99950 * 4.94512 * 3 2 1 29 29 H 1.08998 * 109.47101 * 330.00897 * 7 6 4 30 30 H 1.08996 * 109.47006 * 300.00609 * 8 7 6 31 31 H 1.09008 * 109.46794 * 60.00047 * 8 7 6 32 32 H 1.08998 * 109.47168 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47323 * 59.99917 * 9 7 6 34 34 H 1.08998 * 109.47246 * 180.02562 * 9 7 6 35 35 H 1.09008 * 109.47099 * 300.00574 * 9 7 6 36 36 H 0.97002 * 120.00168 * 122.31247 * 10 2 1 37 37 H 1.09008 * 109.47134 * 35.27166 * 11 10 2 38 38 H 1.09000 * 109.47077 * 299.99909 * 12 11 10 39 39 H 1.09003 * 109.47011 * 59.99472 * 12 11 10 40 40 H 1.09000 * 109.47077 * 300.00166 * 13 12 11 41 41 H 1.08995 * 109.47109 * 179.97438 * 13 12 11 42 42 H 1.09000 * 109.46777 * 60.00358 * 14 13 12 43 43 H 0.96998 * 119.99761 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.47077 * 299.99659 * 23 14 13 45 45 H 1.08996 * 109.47283 * 179.97438 * 23 14 13 46 46 H 1.08997 * 109.47541 * 180.02562 * 24 23 14 47 47 H 1.09000 * 109.47077 * 59.99834 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1821 1.1693 0.0000 4 6 3.5900 1.1716 -0.1053 5 8 4.1879 0.1284 -0.2938 6 8 4.2729 2.3308 0.0030 7 6 5.6954 2.2590 -0.1130 8 6 6.0966 2.4292 -1.5797 9 6 6.3322 3.3714 0.7223 10 7 2.1899 -1.1828 0.0005 11 6 1.9734 -2.1532 1.0764 12 6 2.8645 -1.8000 2.2688 13 6 2.6380 -2.8132 3.3927 14 6 2.9875 -4.2163 2.8927 15 6 2.7650 -5.2140 3.9998 16 1 2.0582 -6.0198 3.8665 17 6 3.4636 -5.0985 5.1828 18 7 4.3239 -4.1171 5.3453 19 14 3.1872 -6.3349 6.5555 20 1 4.1318 -7.4697 6.3970 21 1 3.4179 -5.6782 7.8672 22 1 1.7920 -6.8399 6.4933 23 6 2.0964 -4.5695 1.7002 24 6 2.3230 -3.5563 0.5763 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8901 -0.5138 28 1 1.6450 2.1029 0.0806 29 1 6.0409 1.2903 0.2480 30 1 5.6429 1.6367 -2.1748 31 1 5.7510 3.3979 -1.9408 32 1 7.1816 2.3740 -1.6684 33 1 6.0463 3.2501 1.7672 34 1 7.4171 3.3168 0.6334 35 1 5.9865 4.3401 0.3612 36 1 2.8213 -1.3786 -0.7093 37 1 0.9279 -2.1275 1.3840 38 1 3.9099 -1.8257 1.9613 39 1 2.6152 -0.8006 2.6253 40 1 1.5925 -2.7871 3.7001 41 1 3.2732 -2.5618 4.2420 42 1 4.0330 -4.2424 2.5853 43 1 4.8151 -4.0356 6.1777 44 1 1.0510 -4.5434 2.0076 45 1 2.3457 -5.5688 1.3437 46 1 1.6878 -3.8077 -0.2730 47 1 3.3684 -3.5824 0.2689 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173327869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:57 Heat of formation + Delta-G solvation = -91.545099 kcal Electronic energy + Delta-G solvation = -24739.719068 eV Core-core repulsion = 21307.970457 eV Total energy + Delta-G solvation = -3431.748611 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44606 -38.63526 -36.97523 -35.56734 -33.14670 -32.85973 -31.07011 -29.72116 -28.50514 -28.07196 -27.38000 -24.51477 -22.98957 -21.63658 -20.97063 -20.48304 -19.48268 -18.60366 -17.70006 -16.36613 -16.30291 -15.85004 -15.62258 -14.59448 -14.54002 -14.17950 -13.96673 -13.55993 -13.22379 -13.09896 -12.98223 -12.95636 -12.73060 -12.46776 -12.39387 -12.14264 -12.07761 -11.76300 -11.69168 -11.31994 -11.01796 -10.89201 -10.73162 -10.52098 -10.42522 -10.35286 -10.23576 -10.14950 -9.86626 -9.34231 -9.29231 -8.93973 -8.63868 -8.27564 -7.63087 -5.94020 -4.00662 1.30293 3.13219 3.32157 3.37049 3.39071 3.41840 3.90135 4.46691 4.76279 4.87134 4.89862 5.13715 5.26328 5.32696 5.37710 5.41078 5.42568 5.47097 5.59026 5.60758 5.71221 5.75361 5.81758 5.85473 5.95511 6.02780 6.07011 6.16938 6.33460 6.38343 6.42228 6.46025 6.64374 6.72766 6.76095 6.84647 6.98132 7.15385 7.30352 7.53992 7.70462 7.79230 8.05990 8.12670 8.20924 8.28540 8.50746 9.03793 9.63902 11.11322 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.003741 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.428887 B = 7483.573987 C = 8490.122594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.275 3.725 3 C -0.318 4.318 4 C 0.505 3.495 5 O -0.522 6.522 6 O -0.357 6.357 7 C 0.079 3.921 8 C -0.168 4.168 9 C -0.148 4.148 10 N -0.748 5.748 11 C 0.164 3.836 12 C -0.123 4.123 13 C -0.107 4.107 14 C 0.048 3.952 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.104 4.104 24 C -0.121 4.121 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.406 0.594 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.038 0.962 40 H 0.032 0.968 41 H 0.092 0.908 42 H 0.025 0.975 43 H 0.259 0.741 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.276 13.404 -12.451 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 C -0.344 4.344 4 C 0.355 3.645 5 O -0.414 6.414 6 O -0.275 6.275 7 C 0.023 3.977 8 C -0.225 4.225 9 C -0.205 4.205 10 N -0.385 5.385 11 C 0.060 3.940 12 C -0.162 4.162 13 C -0.145 4.145 14 C 0.029 3.971 15 C -0.551 4.551 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.528 5.528 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.143 4.143 24 C -0.159 4.159 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.152 0.848 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.247 0.753 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.110 0.890 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.024 13.100 -12.227 18.173 hybrid contribution 0.305 -0.592 0.527 0.849 sum -2.719 12.509 -11.700 17.342 Atomic orbital electron populations 1.21314 0.91169 1.03715 1.03716 1.20078 0.92802 0.86203 0.84166 1.20779 0.90914 0.99208 1.23466 1.19708 0.89327 0.81254 0.74164 1.90789 1.71160 1.32182 1.47246 1.86259 1.21197 1.35988 1.84029 1.22179 0.78397 1.00923 0.96153 1.22216 1.01888 1.02480 0.95911 1.21876 1.00260 0.98116 1.00276 1.44569 1.47852 1.17058 1.29043 1.21018 0.98913 0.87533 0.86491 1.22042 0.99575 0.98727 0.95842 1.21605 1.00016 0.95303 0.97599 1.18665 0.94552 0.92579 0.91285 1.21226 1.23211 1.11416 0.99297 0.92821 1.24973 0.95142 0.95497 0.98405 1.69887 1.26208 1.30859 1.25888 0.86657 0.78478 0.81512 0.81704 1.20793 1.21307 1.19993 1.21587 1.00503 0.96440 0.95725 1.21801 1.01162 0.94325 0.98610 0.89821 0.90024 0.90343 0.84797 0.89952 0.92165 0.91989 0.91221 0.91704 0.90797 0.91778 0.75347 0.91584 0.92415 0.94318 0.94934 0.88961 0.95698 0.93112 0.93314 0.93163 0.93260 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.54 36.01 0.34 -0.99 16 2 C 0.28 3.58 6.19 -81.62 -0.51 3.08 16 3 C -0.32 -4.30 9.59 -39.61 -0.38 -4.68 16 4 C 0.50 7.98 7.62 31.85 0.24 8.22 16 5 O -0.52 -9.38 13.15 -19.43 -0.26 -9.64 16 6 O -0.36 -5.22 9.75 -41.24 -0.40 -5.62 16 7 C 0.08 1.00 3.14 -26.73 -0.08 0.92 16 8 C -0.17 -1.79 9.53 37.16 0.35 -1.43 16 9 C -0.15 -1.48 9.56 37.15 0.36 -1.13 16 10 N -0.75 -11.20 3.68 -50.38 -0.19 -11.39 16 11 C 0.16 2.76 2.71 -67.93 -0.18 2.57 16 12 C -0.12 -2.49 5.50 -26.73 -0.15 -2.64 16 13 C -0.11 -2.52 4.98 -26.73 -0.13 -2.65 16 14 C 0.05 1.18 2.10 -91.78 -0.19 0.98 16 15 C -0.51 -14.06 8.56 -34.45 -0.29 -14.36 16 16 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -25.65 11.32 55.43 0.63 -25.02 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.32 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.10 -2.12 5.14 -26.73 -0.14 -2.26 16 24 C -0.12 -2.09 5.39 -26.73 -0.14 -2.23 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.08 1.20 7.11 -51.93 -0.37 0.84 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.41 6.37 7.06 -40.82 -0.29 6.08 16 37 H 0.07 1.07 7.58 -51.92 -0.39 0.67 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 42 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -29.79 373.89 -9.12 -38.91 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -8.51 Total: 5.79 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.00 Total: -14.99 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.44 Total: -36.41 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.66 Total: -15.26 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.79 -9.12 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.636 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds