Wall clock time and date at job start Tue Mar 31 2020 06:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35019 * 119.99878 * 2 1 4 4 C 1.41189 * 120.00114 * 184.94178 * 3 2 1 5 5 O 1.21710 * 120.00062 * 5.34518 * 4 3 2 6 6 O 1.34971 * 119.99871 * 185.34836 * 4 3 2 7 7 C 1.42904 * 116.99802 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.46773 * 90.00038 * 7 6 4 9 9 C 1.52994 * 109.47482 * 210.00094 * 7 6 4 10 10 N 1.36576 * 120.00207 * 179.97438 * 2 1 3 11 11 C 1.46500 * 120.00349 * 302.03886 * 10 2 1 12 12 C 1.52996 * 109.47265 * 275.27499 * 11 10 2 13 13 C 1.53002 * 109.47528 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.46972 * 59.99624 * 13 12 11 15 15 C 1.50691 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99647 * 120.00114 * 15 14 13 17 17 C 1.37875 * 120.00633 * 300.00067 * 15 14 13 18 18 N 1.31519 * 119.99748 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00506 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46817 * 90.00307 * 19 17 15 21 21 H 1.48500 * 109.47436 * 210.00360 * 19 17 15 22 22 H 1.48505 * 109.46936 * 330.00662 * 19 17 15 23 23 C 1.52996 * 109.47301 * 300.00515 * 14 13 12 24 24 C 1.53002 * 109.47528 * 59.99825 * 23 14 13 25 25 H 1.09004 * 109.47647 * 270.00081 * 1 2 3 26 26 H 1.08994 * 109.47218 * 30.00276 * 1 2 3 27 27 H 1.09005 * 109.46862 * 150.00290 * 1 2 3 28 28 H 1.08004 * 119.99950 * 4.94512 * 3 2 1 29 29 H 1.08998 * 109.47101 * 330.00897 * 7 6 4 30 30 H 1.08996 * 109.47006 * 300.00609 * 8 7 6 31 31 H 1.09008 * 109.46794 * 60.00047 * 8 7 6 32 32 H 1.08998 * 109.47168 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47323 * 59.99917 * 9 7 6 34 34 H 1.08998 * 109.47246 * 180.02562 * 9 7 6 35 35 H 1.09008 * 109.47099 * 300.00574 * 9 7 6 36 36 H 0.97002 * 120.00168 * 122.31247 * 10 2 1 37 37 H 1.09008 * 109.47134 * 35.27166 * 11 10 2 38 38 H 1.09000 * 109.47077 * 299.99909 * 12 11 10 39 39 H 1.09003 * 109.47011 * 59.99472 * 12 11 10 40 40 H 1.09000 * 109.47077 * 300.00166 * 13 12 11 41 41 H 1.08995 * 109.47109 * 179.97438 * 13 12 11 42 42 H 1.09000 * 109.46777 * 60.00358 * 14 13 12 43 43 H 0.96998 * 119.99761 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.47077 * 299.99659 * 23 14 13 45 45 H 1.08996 * 109.47283 * 179.97438 * 23 14 13 46 46 H 1.08997 * 109.47541 * 180.02562 * 24 23 14 47 47 H 1.09000 * 109.47077 * 59.99834 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1821 1.1693 0.0000 4 6 3.5900 1.1716 -0.1053 5 8 4.1879 0.1284 -0.2938 6 8 4.2729 2.3308 0.0030 7 6 5.6954 2.2590 -0.1130 8 6 6.0966 2.4292 -1.5797 9 6 6.3322 3.3714 0.7223 10 7 2.1899 -1.1828 0.0005 11 6 1.9734 -2.1532 1.0764 12 6 2.8645 -1.8000 2.2688 13 6 2.6380 -2.8132 3.3927 14 6 2.9875 -4.2163 2.8927 15 6 2.7650 -5.2140 3.9998 16 1 2.0582 -6.0198 3.8665 17 6 3.4636 -5.0985 5.1828 18 7 4.3239 -4.1171 5.3453 19 14 3.1872 -6.3349 6.5555 20 1 4.1318 -7.4697 6.3970 21 1 3.4179 -5.6782 7.8672 22 1 1.7920 -6.8399 6.4933 23 6 2.0964 -4.5695 1.7002 24 6 2.3230 -3.5563 0.5763 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8901 -0.5138 28 1 1.6450 2.1029 0.0806 29 1 6.0409 1.2903 0.2480 30 1 5.6429 1.6367 -2.1748 31 1 5.7510 3.3979 -1.9408 32 1 7.1816 2.3740 -1.6684 33 1 6.0463 3.2501 1.7672 34 1 7.4171 3.3168 0.6334 35 1 5.9865 4.3401 0.3612 36 1 2.8213 -1.3786 -0.7093 37 1 0.9279 -2.1275 1.3840 38 1 3.9099 -1.8257 1.9613 39 1 2.6152 -0.8006 2.6253 40 1 1.5925 -2.7871 3.7001 41 1 3.2732 -2.5618 4.2420 42 1 4.0330 -4.2424 2.5853 43 1 4.8151 -4.0356 6.1777 44 1 1.0510 -4.5434 2.0076 45 1 2.3457 -5.5688 1.3437 46 1 1.6878 -3.8077 -0.2730 47 1 3.3684 -3.5824 0.2689 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173327869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:56 Heat of formation + Delta-G solvation = -106.387715 kcal Electronic energy + Delta-G solvation = -24740.362692 eV Core-core repulsion = 21307.970457 eV Total energy + Delta-G solvation = -3432.392235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.61083 -40.00840 -38.32027 -36.87523 -34.80445 -34.04134 -32.58117 -31.42240 -29.67946 -29.39150 -28.22368 -26.39411 -24.13739 -23.30345 -22.46032 -21.65830 -20.79771 -20.11937 -18.84876 -18.39153 -17.51115 -17.09817 -16.92232 -16.48060 -15.63734 -15.30975 -15.17396 -14.94082 -14.75562 -14.60885 -14.14984 -14.07775 -13.86603 -13.77999 -13.45469 -13.20897 -13.17444 -12.98345 -12.93835 -12.87662 -12.70682 -12.56446 -12.25535 -12.12522 -11.96434 -11.86593 -11.81808 -11.45878 -11.29677 -11.18959 -10.78723 -10.61718 -10.38784 -10.33344 -8.84534 -8.06160 -6.21369 0.21070 1.41242 1.41742 1.52146 2.07575 2.22857 2.43933 2.72066 3.20049 3.83721 3.87407 3.94005 3.98113 4.09392 4.16129 4.35909 4.45411 4.54957 4.57687 4.65458 4.67149 4.72792 4.76672 4.78956 4.80613 4.81326 4.85629 4.90170 4.97357 5.09180 5.12378 5.13573 5.17233 5.20345 5.35979 5.37883 5.46414 5.49236 5.62201 5.67856 5.71757 6.03211 6.20491 6.40603 6.51085 6.92893 6.93527 7.09758 7.47318 8.97521 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.003741 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.428887 B = 7483.573987 C = 8490.122594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.275 3.725 3 C -0.328 4.328 4 C 0.494 3.506 5 O -0.555 6.555 6 O -0.361 6.361 7 C 0.068 3.932 8 C -0.160 4.160 9 C -0.142 4.142 10 N -0.751 5.751 11 C 0.178 3.822 12 C -0.110 4.110 13 C -0.097 4.097 14 C 0.044 3.956 15 C -0.532 4.532 16 H 0.056 0.944 17 C 0.009 3.991 18 N -0.920 5.920 19 Si 0.953 3.047 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.264 1.264 23 C -0.097 4.097 24 C -0.112 4.112 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.160 0.840 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.402 0.598 37 H 0.087 0.913 38 H 0.025 0.975 39 H 0.040 0.960 40 H 0.037 0.963 41 H 0.052 0.948 42 H -0.018 1.018 43 H 0.258 0.742 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.085 0.915 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 14.111 -13.390 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.169 3.831 3 C -0.353 4.353 4 C 0.346 3.654 5 O -0.449 6.449 6 O -0.279 6.279 7 C 0.013 3.987 8 C -0.218 4.218 9 C -0.199 4.199 10 N -0.388 5.388 11 C 0.073 3.927 12 C -0.149 4.149 13 C -0.136 4.136 14 C 0.025 3.975 15 C -0.570 4.570 16 H 0.074 0.926 17 C -0.189 4.189 18 N -0.560 5.560 19 Si 0.779 3.221 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.188 1.188 23 C -0.135 4.135 24 C -0.150 4.150 25 H 0.109 0.891 26 H 0.126 0.874 27 H 0.106 0.894 28 H 0.178 0.822 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.241 0.759 37 H 0.105 0.895 38 H 0.044 0.956 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.001 0.999 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.103 0.897 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.164 13.836 -13.179 19.793 hybrid contribution 1.048 -0.772 0.822 1.540 sum -4.116 13.064 -12.357 18.447 Atomic orbital electron populations 1.21394 0.87841 1.05545 1.04619 1.20674 0.94673 0.85033 0.82720 1.21103 0.89847 1.00696 1.23692 1.20277 0.90385 0.81076 0.73647 1.90777 1.71973 1.33194 1.48975 1.86250 1.22199 1.35555 1.83847 1.22428 0.77660 1.00579 0.98043 1.22169 1.03041 1.02536 0.94017 1.21881 1.01335 0.97635 0.99096 1.44430 1.48419 1.17482 1.28454 1.20712 0.98757 0.87673 0.85530 1.21867 0.98662 0.97777 0.96574 1.21370 0.99138 0.95650 0.97393 1.18643 0.93194 0.92916 0.92732 1.21646 1.23155 1.11983 1.00228 0.92575 1.25794 0.94936 0.97255 1.00940 1.70062 1.27081 1.32506 1.26374 0.85628 0.78815 0.79095 0.78552 1.20424 1.21131 1.18816 1.21440 0.99869 0.97385 0.94779 1.21692 1.01050 0.93699 0.98526 0.89058 0.87385 0.89442 0.82217 0.92869 0.93962 0.90489 0.89295 0.92721 0.88752 0.90317 0.75886 0.89478 0.95601 0.94160 0.94375 0.92972 0.99940 0.93289 0.92071 0.93126 0.89668 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.54 71.24 0.68 -1.37 16 2 C 0.28 6.56 6.19 41.08 0.25 6.82 16 3 C -0.33 -8.38 9.59 22.25 0.21 -8.17 16 4 C 0.49 15.72 7.62 68.54 0.52 16.24 16 5 O -0.56 -20.69 13.15 19.15 0.25 -20.44 16 6 O -0.36 -10.58 9.75 -58.88 -0.57 -11.15 16 7 C 0.07 1.76 3.14 30.59 0.10 1.85 16 8 C -0.16 -3.33 9.53 71.98 0.69 -2.64 16 9 C -0.14 -2.74 9.56 71.98 0.69 -2.05 16 10 N -0.75 -21.57 3.68 -313.30 -1.15 -22.73 16 11 C 0.18 5.75 2.71 44.99 0.12 5.87 16 12 C -0.11 -4.55 5.50 30.59 0.17 -4.38 16 13 C -0.10 -4.70 4.98 30.60 0.15 -4.55 16 14 C 0.04 2.22 2.10 -11.54 -0.02 2.20 16 15 C -0.53 -29.61 8.56 25.60 0.22 -29.39 16 16 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 17 C 0.01 0.50 5.30 84.65 0.45 0.94 16 18 N -0.92 -55.04 11.32 21.45 0.24 -54.80 16 19 Si 0.95 44.20 29.54 68.60 2.03 46.22 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 23 C -0.10 -3.85 5.14 30.59 0.16 -3.70 16 24 C -0.11 -3.71 5.39 30.60 0.17 -3.55 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.11 1.09 8.08 -2.39 -0.02 1.07 16 27 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.05 1.66 7.11 -2.39 -0.02 1.64 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.28 8.14 -2.38 -0.02 1.27 16 36 H 0.40 12.43 7.06 -92.71 -0.65 11.77 16 37 H 0.09 2.53 7.58 -2.38 -0.02 2.51 16 38 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 2.95 6.07 -2.39 -0.01 2.93 16 42 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 43 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -67.96 373.89 5.61 -62.35 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.27 Total: 26.42 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 4.55 Total: -25.88 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -0.91 Total: -77.53 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.32 Total: -31.59 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -67.96 5.61 -62.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.037 kcal (2) G-P(sol) polarization free energy of solvation -67.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds