Wall clock time and date at job start Tue Mar 31 2020 07:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.46794 * 2 1 4 4 C 1.34235 * 116.99853 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99636 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99821 * 180.02562 * 4 3 2 7 7 C 1.52998 * 115.55570 * 325.58659 * 6 4 3 8 8 N 1.46906 * 109.46913 * 34.32879 * 7 6 4 9 9 C 1.46898 * 110.99961 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47006 * 84.99970 * 9 8 7 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47060 * 300.00449 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46999 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00420 * 17 15 13 20 20 H 1.48498 * 109.46942 * 240.00334 * 17 15 13 21 21 C 1.52996 * 109.47328 * 60.00126 * 12 11 10 22 22 C 1.52997 * 109.47123 * 204.99951 * 9 8 7 23 23 C 1.53003 * 117.51732 * 111.29230 * 6 4 3 24 24 C 1.52997 * 60.00335 * 107.47696 * 23 6 4 25 25 H 1.09006 * 109.47229 * 59.99670 * 1 2 3 26 26 H 1.09000 * 109.47277 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47524 * 300.00046 * 1 2 3 28 28 H 1.09004 * 109.47160 * 240.00806 * 2 1 3 29 29 H 1.08989 * 109.47264 * 120.00212 * 2 1 3 30 30 H 1.08996 * 109.47155 * 274.33172 * 7 6 4 31 31 H 1.08994 * 109.47312 * 154.33179 * 7 6 4 32 32 H 1.00895 * 110.99813 * 56.04956 * 8 7 6 33 33 H 1.09001 * 109.47062 * 325.00224 * 9 8 7 34 34 H 1.08998 * 109.46505 * 59.99663 * 10 9 8 35 35 H 1.08996 * 109.46884 * 300.00544 * 10 9 8 36 36 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 37 37 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 38 38 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 39 39 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 40 40 H 1.08992 * 109.47554 * 59.99639 * 21 12 11 41 41 H 1.09004 * 109.47108 * 179.97438 * 21 12 11 42 42 H 1.09002 * 109.47045 * 60.00157 * 22 9 8 43 43 H 1.09001 * 109.47375 * 300.00082 * 22 9 8 44 44 H 1.08997 * 117.50067 * 214.97406 * 23 6 4 45 45 H 1.09005 * 117.49569 * 359.97438 * 23 6 4 46 46 H 1.08999 * 117.49753 * 252.51141 * 24 23 6 47 47 H 1.08994 * 117.51499 * 107.47791 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 6 3.1208 3.9828 -0.7789 8 7 1.6863 3.6879 -0.6636 9 6 0.8852 4.6737 -1.4015 10 6 0.7865 4.2545 -2.8697 11 6 -0.0483 5.2809 -3.6381 12 6 -1.4516 5.3530 -3.0327 13 6 -2.2737 6.3644 -3.7892 14 1 -1.8388 6.9017 -4.6190 15 6 -3.5812 6.6031 -3.4226 16 7 -4.1109 5.9484 -2.4124 17 14 -4.6000 7.8573 -4.3599 18 1 -3.7778 8.4521 -5.4440 19 1 -5.7877 7.1890 -4.9497 20 1 -5.0444 8.9275 -3.4312 21 6 -1.3528 5.7722 -1.5646 22 6 -0.5181 4.7463 -0.7964 23 6 4.6456 3.4020 1.2659 24 6 5.4448 3.0716 0.0037 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.4141 3.9558 -1.8283 31 1 3.3221 4.9732 -0.3708 32 1 1.4029 3.6434 0.3037 33 1 1.3610 5.6521 -1.3342 34 1 0.3108 3.2761 -2.9369 35 1 1.7863 4.2027 -3.3007 36 1 -0.1190 4.9820 -4.6840 37 1 0.4271 6.2595 -3.5709 38 1 -1.9270 4.3744 -3.1000 39 1 -5.0308 6.1160 -2.1547 40 1 -0.8774 6.7507 -1.4974 41 1 -2.3526 5.8240 -1.1335 42 1 -0.4477 5.0450 0.2496 43 1 -0.9939 3.7679 -0.8636 44 1 4.5527 4.4523 1.5422 45 1 4.7057 2.7004 2.0979 46 1 6.0308 2.1526 0.0054 47 1 5.8776 3.9043 -0.5506 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:17 Heat of formation + Delta-G solvation = -77.665463 kcal Electronic energy + Delta-G solvation = -24924.547870 eV Core-core repulsion = 21493.401125 eV Total energy + Delta-G solvation = -3431.146745 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.65496 -38.33066 -37.54553 -36.20451 -34.29012 -32.14808 -31.54468 -29.80099 -28.77163 -26.12330 -24.59173 -23.71672 -22.75748 -22.36455 -21.50929 -20.33198 -19.78727 -18.65555 -17.45417 -16.53376 -16.40103 -16.27402 -15.32937 -14.74355 -14.66251 -14.31014 -13.95118 -13.88152 -13.68814 -13.13659 -12.99141 -12.72183 -12.60093 -12.42082 -12.01084 -11.88084 -11.76218 -11.48951 -11.30301 -11.21130 -11.03858 -10.95465 -10.65478 -10.55086 -10.45898 -10.37929 -10.26501 -10.20009 -10.06357 -9.70928 -9.32401 -8.83666 -8.61177 -8.26992 -8.00891 -5.93808 -3.99475 2.13150 2.69824 3.31239 3.39510 3.43491 3.49495 4.07158 4.47220 4.50280 4.59470 4.69048 4.85021 4.99355 5.07684 5.29520 5.29862 5.35463 5.38133 5.45667 5.55114 5.58304 5.67235 5.74086 5.80934 5.83957 5.88338 6.00454 6.14327 6.22312 6.42268 6.44511 6.50078 6.58592 6.64580 6.75072 6.87310 7.02444 7.20147 7.30374 7.43573 7.59740 7.73697 7.80713 7.90713 8.09074 8.21318 8.53287 9.05182 9.64955 11.11627 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022984 B = 0.003527 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.931917 B = 7936.340340 C = 8608.518549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.308 6.308 4 C 0.509 3.491 5 O -0.526 6.526 6 C -0.139 4.139 7 C 0.099 3.901 8 N -0.671 5.671 9 C 0.093 3.907 10 C -0.098 4.098 11 C -0.109 4.109 12 C 0.049 3.951 13 C -0.511 4.511 14 H 0.053 0.947 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.887 3.113 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.106 4.106 22 C -0.114 4.114 23 C -0.150 4.150 24 C -0.140 4.140 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.341 0.659 33 H 0.034 0.966 34 H 0.060 0.940 35 H 0.038 0.962 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.025 0.975 39 H 0.258 0.742 40 H 0.030 0.970 41 H 0.092 0.908 42 H 0.038 0.962 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.738 -7.278 8.053 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.222 6.222 4 C 0.353 3.647 5 O -0.417 6.417 6 C -0.141 4.141 7 C -0.031 4.031 8 N -0.303 5.303 9 C -0.015 4.015 10 C -0.137 4.137 11 C -0.147 4.147 12 C 0.031 3.969 13 C -0.549 4.549 14 H 0.071 0.929 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.715 3.285 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.145 4.145 22 C -0.152 4.152 23 C -0.187 4.187 24 C -0.177 4.177 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.160 0.840 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.110 0.890 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.127 0.873 45 H 0.118 0.882 46 H 0.128 0.872 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.731 -8.054 7.634 18.443 hybrid contribution -0.504 1.277 0.092 1.376 sum 14.227 -6.777 7.726 17.551 Atomic orbital electron populations 1.21757 0.92348 1.02380 1.04226 1.22994 0.95726 0.80988 1.01615 1.86787 1.22556 1.30500 1.82383 1.22139 0.81265 0.89844 0.71469 1.90626 1.61180 1.42707 1.47167 1.21204 0.95475 0.92408 1.05010 1.21472 0.89020 0.93165 0.99406 1.60504 1.00935 1.50905 1.17909 1.21579 0.93708 0.91588 0.94647 1.21498 0.98486 0.99961 0.93725 1.21638 0.98145 0.96780 0.98166 1.18646 0.89863 0.96845 0.91583 1.21305 0.96438 1.22266 1.14926 0.92863 1.24959 0.97784 0.96119 0.95146 1.69884 1.14010 1.41828 1.27255 0.86622 0.80338 0.81543 0.79997 1.19888 1.21125 1.21148 1.21571 1.00120 0.94682 0.98108 1.21753 0.94308 1.01520 0.97596 1.23194 1.01472 1.02817 0.91186 1.23110 0.90224 1.04289 1.00098 0.90740 0.90868 0.91560 0.91750 0.92152 0.90281 0.94360 0.83987 0.94779 0.92079 0.94275 0.93562 0.93817 0.95654 0.93227 0.95129 0.88998 0.94367 0.91984 0.87290 0.88179 0.87232 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.29 37.16 0.38 -1.18 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.31 -4.15 7.48 -39.27 -0.29 -4.44 16 4 C 0.51 6.94 7.48 36.00 0.27 7.21 16 5 O -0.53 -8.22 16.01 -18.75 -0.30 -8.52 16 6 C -0.14 -1.54 2.46 -155.66 -0.38 -1.93 16 7 C 0.10 1.17 5.61 -3.82 -0.02 1.15 16 8 N -0.67 -9.30 4.11 -106.73 -0.44 -9.74 16 9 C 0.09 1.53 2.49 -67.71 -0.17 1.36 16 10 C -0.10 -1.75 5.43 -26.73 -0.15 -1.90 16 11 C -0.11 -2.27 5.14 -26.73 -0.14 -2.41 16 12 C 0.05 1.20 2.10 -91.77 -0.19 1.01 16 13 C -0.51 -13.99 8.56 -34.44 -0.29 -14.28 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 17 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 C -0.11 -2.43 4.98 -26.76 -0.13 -2.57 16 22 C -0.11 -2.11 5.19 -26.76 -0.14 -2.25 16 23 C -0.15 -1.28 9.88 -26.73 -0.26 -1.55 16 24 C -0.14 -1.26 9.76 -26.73 -0.26 -1.52 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.06 0.65 8.13 -51.94 -0.42 0.23 16 30 H 0.08 0.98 7.44 -51.93 -0.39 0.60 16 31 H 0.04 0.42 7.81 -51.93 -0.41 0.01 16 32 H 0.34 4.58 7.81 -39.29 -0.31 4.27 16 33 H 0.03 0.57 7.80 -51.93 -0.40 0.17 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.04 0.64 7.45 -51.93 -0.39 0.25 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 42 H 0.04 0.65 8.12 -51.93 -0.42 0.22 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.11 0.78 8.05 -51.93 -0.42 0.36 16 45 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.11 1.06 7.67 -51.93 -0.40 0.66 16 47 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 370.75 15.07 5.59 5.59 Total: -1.00 -29.40 370.75 -9.67 -39.07 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -8.48 Total: 2.74 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -1.35 Total: -16.32 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.19 Total: -34.33 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.59 Total: -12.96 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.40 -9.67 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.594 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds