Wall clock time and date at job start Tue Mar 31 2020 07:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.46794 * 2 1 4 4 C 1.34235 * 116.99853 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99636 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99821 * 180.02562 * 4 3 2 7 7 C 1.52998 * 115.55570 * 325.58659 * 6 4 3 8 8 N 1.46906 * 109.46913 * 34.32879 * 7 6 4 9 9 C 1.46898 * 110.99961 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47006 * 84.99970 * 9 8 7 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47060 * 300.00449 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46999 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00420 * 17 15 13 20 20 H 1.48498 * 109.46942 * 240.00334 * 17 15 13 21 21 C 1.52996 * 109.47328 * 60.00126 * 12 11 10 22 22 C 1.52997 * 109.47123 * 204.99951 * 9 8 7 23 23 C 1.53003 * 117.51732 * 111.29230 * 6 4 3 24 24 C 1.52997 * 60.00335 * 107.47696 * 23 6 4 25 25 H 1.09006 * 109.47229 * 59.99670 * 1 2 3 26 26 H 1.09000 * 109.47277 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47524 * 300.00046 * 1 2 3 28 28 H 1.09004 * 109.47160 * 240.00806 * 2 1 3 29 29 H 1.08989 * 109.47264 * 120.00212 * 2 1 3 30 30 H 1.08996 * 109.47155 * 274.33172 * 7 6 4 31 31 H 1.08994 * 109.47312 * 154.33179 * 7 6 4 32 32 H 1.00895 * 110.99813 * 56.04956 * 8 7 6 33 33 H 1.09001 * 109.47062 * 325.00224 * 9 8 7 34 34 H 1.08998 * 109.46505 * 59.99663 * 10 9 8 35 35 H 1.08996 * 109.46884 * 300.00544 * 10 9 8 36 36 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 37 37 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 38 38 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 39 39 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 40 40 H 1.08992 * 109.47554 * 59.99639 * 21 12 11 41 41 H 1.09004 * 109.47108 * 179.97438 * 21 12 11 42 42 H 1.09002 * 109.47045 * 60.00157 * 22 9 8 43 43 H 1.09001 * 109.47375 * 300.00082 * 22 9 8 44 44 H 1.08997 * 117.50067 * 214.97406 * 23 6 4 45 45 H 1.09005 * 117.49569 * 359.97438 * 23 6 4 46 46 H 1.08999 * 117.49753 * 252.51141 * 24 23 6 47 47 H 1.08994 * 117.51499 * 107.47791 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 6 3.1208 3.9828 -0.7789 8 7 1.6863 3.6879 -0.6636 9 6 0.8852 4.6737 -1.4015 10 6 0.7865 4.2545 -2.8697 11 6 -0.0483 5.2809 -3.6381 12 6 -1.4516 5.3530 -3.0327 13 6 -2.2737 6.3644 -3.7892 14 1 -1.8388 6.9017 -4.6190 15 6 -3.5812 6.6031 -3.4226 16 7 -4.1109 5.9484 -2.4124 17 14 -4.6000 7.8573 -4.3599 18 1 -3.7778 8.4521 -5.4440 19 1 -5.7877 7.1890 -4.9497 20 1 -5.0444 8.9275 -3.4312 21 6 -1.3528 5.7722 -1.5646 22 6 -0.5181 4.7463 -0.7964 23 6 4.6456 3.4020 1.2659 24 6 5.4448 3.0716 0.0037 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.4141 3.9558 -1.8283 31 1 3.3221 4.9732 -0.3708 32 1 1.4029 3.6434 0.3037 33 1 1.3610 5.6521 -1.3342 34 1 0.3108 3.2761 -2.9369 35 1 1.7863 4.2027 -3.3007 36 1 -0.1190 4.9820 -4.6840 37 1 0.4271 6.2595 -3.5709 38 1 -1.9270 4.3744 -3.1000 39 1 -5.0308 6.1160 -2.1547 40 1 -0.8774 6.7507 -1.4974 41 1 -2.3526 5.8240 -1.1335 42 1 -0.4477 5.0450 0.2496 43 1 -0.9939 3.7679 -0.8636 44 1 4.5527 4.4523 1.5422 45 1 4.7057 2.7004 2.0979 46 1 6.0308 2.1526 0.0054 47 1 5.8776 3.9043 -0.5506 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:16 Heat of formation + Delta-G solvation = -92.223792 kcal Electronic energy + Delta-G solvation = -24925.179167 eV Core-core repulsion = 21493.401125 eV Total energy + Delta-G solvation = -3431.778041 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.63772 -39.69077 -38.58027 -37.30532 -35.76655 -33.92801 -32.48450 -31.41259 -30.36634 -27.44640 -25.89330 -25.10850 -23.43600 -23.34409 -23.08216 -21.91456 -20.78138 -20.27818 -18.48202 -18.34336 -17.46748 -17.39579 -16.65446 -16.39492 -15.69756 -15.58849 -15.14448 -14.89747 -14.80488 -14.69860 -14.48950 -14.00847 -13.91140 -13.54798 -13.32067 -13.08743 -12.85635 -12.80108 -12.76841 -12.54787 -12.46205 -12.32976 -12.20404 -12.14057 -11.74985 -11.63873 -11.47433 -11.37317 -11.33860 -11.21189 -11.04176 -10.66056 -10.46420 -10.32006 -9.13222 -8.03987 -6.17719 1.15851 1.40576 1.42890 1.53734 1.80192 2.45729 2.71846 3.11111 3.22379 3.70211 3.81884 3.84245 3.90730 4.06504 4.08471 4.16070 4.18963 4.39920 4.54400 4.60353 4.64772 4.69220 4.69942 4.80741 4.82102 4.88461 4.92604 4.93128 4.98088 4.99617 5.06266 5.11568 5.16987 5.24247 5.25834 5.42152 5.47570 5.55632 5.61832 5.66870 5.76138 6.09569 6.21597 6.30614 6.46502 6.65657 6.89220 6.95439 7.50077 8.99689 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022984 B = 0.003527 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.931917 B = 7936.340340 C = 8608.518549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 O -0.318 6.318 4 C 0.504 3.496 5 O -0.554 6.554 6 C -0.158 4.158 7 C 0.103 3.897 8 N -0.673 5.673 9 C 0.107 3.893 10 C -0.090 4.090 11 C -0.101 4.101 12 C 0.046 3.954 13 C -0.534 4.534 14 H 0.048 0.952 15 C 0.013 3.987 16 N -0.915 5.915 17 Si 0.949 3.051 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.280 1.280 21 C -0.098 4.098 22 C -0.103 4.103 23 C -0.132 4.132 24 C -0.131 4.131 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.346 0.654 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.047 0.953 38 H -0.010 1.010 39 H 0.259 0.741 40 H 0.026 0.974 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.131 0.869 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.307 -6.419 8.688 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.017 4.017 3 O -0.232 6.232 4 C 0.349 3.651 5 O -0.446 6.446 6 C -0.159 4.159 7 C -0.026 4.026 8 N -0.305 5.305 9 C -0.002 4.002 10 C -0.128 4.128 11 C -0.139 4.139 12 C 0.027 3.973 13 C -0.573 4.573 14 H 0.067 0.933 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.775 3.225 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.206 1.206 21 C -0.137 4.137 22 C -0.141 4.141 23 C -0.169 4.169 24 C -0.168 4.168 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.166 0.834 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.008 0.992 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.149 0.851 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.306 -7.196 8.272 19.649 hybrid contribution -1.005 0.959 -0.105 1.393 sum 15.301 -6.237 8.166 18.431 Atomic orbital electron populations 1.21732 0.91488 1.03555 1.03235 1.23114 0.96350 0.80503 1.01724 1.86784 1.22792 1.31380 1.82226 1.22710 0.81042 0.90749 0.70578 1.90607 1.61608 1.43828 1.48601 1.21203 0.96570 0.90739 1.07426 1.21478 0.87360 0.94302 0.99485 1.60385 1.02105 1.49927 1.18060 1.21294 0.92699 0.92529 0.93714 1.21386 0.98713 0.98073 0.94647 1.21499 0.96378 0.97998 0.98072 1.18622 0.91536 0.94240 0.92884 1.21681 0.97371 1.22969 1.15232 0.93342 1.25702 0.98920 0.97916 0.95987 1.70024 1.14240 1.42934 1.28303 0.85644 0.78695 0.79278 0.78863 1.19325 1.20819 1.20560 1.21346 0.99109 0.95812 0.97388 1.21572 0.94996 0.99255 0.98252 1.23327 0.99215 1.03950 0.90381 1.23214 0.88501 1.04639 1.00482 0.92658 0.88688 0.91454 0.92344 0.91328 0.90801 0.92375 0.83406 0.94094 0.93472 0.92105 0.94097 0.93420 0.99203 0.93195 0.95479 0.92434 0.92327 0.93329 0.85091 0.88200 0.88213 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 10.29 71.98 0.74 -2.17 16 2 C 0.06 1.31 6.19 71.98 0.45 1.75 16 3 O -0.32 -8.32 7.48 -51.46 -0.38 -8.71 16 4 C 0.50 13.19 7.48 71.23 0.53 13.72 16 5 O -0.55 -17.00 16.01 21.96 0.35 -16.64 16 6 C -0.16 -3.11 2.46 -52.93 -0.13 -3.24 16 7 C 0.10 2.13 5.61 86.30 0.48 2.62 16 8 N -0.67 -17.27 4.11 -491.57 -2.02 -19.29 16 9 C 0.11 3.32 2.49 44.92 0.11 3.43 16 10 C -0.09 -3.11 5.43 30.60 0.17 -2.94 16 11 C -0.10 -4.20 5.14 30.59 0.16 -4.04 16 12 C 0.05 2.29 2.10 -11.54 -0.02 2.27 16 13 C -0.53 -29.80 8.56 25.60 0.22 -29.58 16 14 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 15 C 0.01 0.73 5.30 84.66 0.45 1.18 16 16 N -0.92 -53.03 11.32 21.45 0.24 -52.78 16 17 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 C -0.10 -4.55 4.98 30.58 0.15 -4.40 16 22 C -0.10 -3.76 5.19 30.58 0.16 -3.60 16 23 C -0.13 -1.84 9.88 30.59 0.30 -1.53 16 24 C -0.13 -1.98 9.76 30.60 0.30 -1.69 16 25 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.39 8.13 -2.38 -0.02 1.37 16 29 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 30 H 0.07 1.62 7.44 -2.39 -0.02 1.60 16 31 H 0.06 1.01 7.81 -2.39 -0.02 0.99 16 32 H 0.35 8.51 7.81 -89.70 -0.70 7.81 16 33 H 0.04 1.25 7.80 -2.39 -0.02 1.23 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.85 7.45 -2.39 -0.02 1.84 16 36 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 38 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 39 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 40 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 3.07 6.07 -2.38 -0.01 3.06 16 42 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.13 1.28 8.05 -2.39 -0.02 1.26 16 45 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.10 1.75 7.67 -2.39 -0.02 1.73 16 47 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -64.65 370.75 4.51 -60.15 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.23 Total: 19.60 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 4.06 Total: -28.22 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -1.78 Total: -72.08 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.03 Total: -25.35 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -64.65 4.51 -60.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.079 kcal (2) G-P(sol) polarization free energy of solvation -64.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds