Wall clock time and date at job start Tue Mar 31 2020 07:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45206 * 109.46916 * 2 1 4 4 C 1.34230 * 117.00253 * 183.28498 * 3 2 1 5 5 O 1.20829 * 119.99651 * 4.03371 * 4 3 2 6 6 C 1.50695 * 120.00101 * 184.03029 * 4 3 2 7 7 N 1.46893 * 112.85048 * 322.05733 * 6 4 3 8 8 C 1.46899 * 111.00612 * 293.65207 * 7 6 4 9 9 C 1.52996 * 109.47755 * 123.74048 * 8 7 6 10 10 C 1.52999 * 109.47546 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.46739 * 300.00038 * 10 9 8 12 12 C 1.50702 * 109.47126 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99909 * 354.19505 * 12 11 10 14 14 C 1.37882 * 120.00426 * 174.18879 * 12 11 10 15 15 N 1.31507 * 120.00055 * 158.93582 * 14 12 11 16 16 Si 1.86800 * 119.99446 * 339.21181 * 14 12 11 17 17 H 1.48503 * 109.46838 * 179.72433 * 16 14 12 18 18 H 1.48500 * 109.47312 * 299.72088 * 16 14 12 19 19 H 1.48496 * 109.47272 * 59.72332 * 16 14 12 20 20 C 1.52997 * 109.47593 * 59.99984 * 11 10 9 21 21 C 1.53001 * 109.46780 * 300.00007 * 20 11 10 22 22 C 1.53775 * 113.69495 * 93.33200 * 6 4 3 23 23 C 1.53787 * 87.08164 * 89.12399 * 22 6 4 24 24 C 1.53778 * 87.07961 * 25.43417 * 23 22 6 25 25 H 1.09002 * 109.46587 * 184.74274 * 1 2 3 26 26 H 1.08991 * 109.46940 * 304.74275 * 1 2 3 27 27 H 1.09002 * 109.47041 * 64.74227 * 1 2 3 28 28 H 1.09003 * 109.47228 * 240.00912 * 2 1 3 29 29 H 1.08993 * 109.47556 * 120.00051 * 2 1 3 30 30 H 1.00903 * 111.00300 * 169.68990 * 7 6 4 31 31 H 1.09004 * 109.46701 * 3.73311 * 8 7 6 32 32 H 1.08994 * 109.46897 * 59.99773 * 9 8 7 33 33 H 1.09004 * 109.46932 * 299.99858 * 9 8 7 34 34 H 1.08993 * 109.47564 * 179.97438 * 10 9 8 35 35 H 1.09004 * 109.47019 * 59.99196 * 10 9 8 36 36 H 1.09004 * 109.47175 * 299.99543 * 11 10 9 37 37 H 0.97000 * 120.00120 * 355.05231 * 15 14 12 38 38 H 1.09004 * 109.47220 * 59.99586 * 20 11 10 39 39 H 1.09000 * 109.47624 * 179.97438 * 20 11 10 40 40 H 1.08994 * 109.47408 * 299.99683 * 21 20 11 41 41 H 1.09003 * 109.46761 * 179.97438 * 21 20 11 42 42 H 1.08998 * 113.61622 * 203.67588 * 22 6 4 43 43 H 1.09005 * 113.60901 * 334.57853 * 22 6 4 44 44 H 1.09000 * 113.61029 * 270.88717 * 23 22 6 45 45 H 1.08997 * 113.68541 * 139.99797 * 23 22 6 46 46 H 1.09000 * 113.61505 * 220.01783 * 24 23 22 47 47 H 1.09007 * 113.68972 * 89.12606 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3428 1.5457 -0.0685 5 8 4.0730 0.5920 -0.2000 6 6 3.9240 2.9333 0.0184 7 7 3.1088 3.9378 -0.6775 8 6 3.1062 3.7012 -2.1273 9 6 1.6645 3.5529 -2.6174 10 6 1.6619 3.3059 -4.1273 11 6 2.3232 4.4881 -4.8386 12 6 2.3212 4.2446 -6.3258 13 1 1.9775 3.2987 -6.7177 14 6 2.7581 5.2294 -7.1863 15 7 3.1512 4.9143 -8.4010 16 14 2.7987 7.0103 -6.6239 17 1 3.3103 7.8655 -7.7248 18 1 1.4271 7.4447 -6.2562 19 1 3.6909 7.1364 -5.4436 20 6 3.7650 4.6365 -4.3486 21 6 3.7675 4.8835 -2.8386 22 6 4.3263 3.3466 1.4439 23 6 5.7042 2.7305 1.1492 24 6 5.4186 2.9986 -0.3378 25 1 -0.3632 -1.0242 0.0850 26 1 -0.3633 0.5856 0.8444 27 1 -0.3633 0.4385 -0.9294 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.4257 4.8717 -0.4640 31 1 3.6607 2.7889 -2.3476 32 1 1.1102 4.4651 -2.3972 33 1 1.1935 2.7103 -2.1110 34 1 0.6348 3.1997 -4.4764 35 1 2.2162 2.3934 -4.3472 36 1 1.7690 5.4006 -4.6187 37 1 3.2021 3.9832 -8.6680 38 1 4.3192 3.7240 -4.5684 39 1 4.2363 5.4785 -4.8556 40 1 3.2134 5.7959 -2.6187 41 1 4.7947 4.9888 -2.4895 42 1 4.3537 4.4258 1.5944 43 1 3.7717 2.8235 2.2230 44 1 5.7707 1.6711 1.3969 45 1 6.5372 3.3110 1.5455 46 1 5.7458 2.1947 -0.9972 47 1 5.7443 3.9824 -0.6759 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:58 Heat of formation + Delta-G solvation = -86.143714 kcal Electronic energy + Delta-G solvation = -25568.520642 eV Core-core repulsion = 22137.006253 eV Total energy + Delta-G solvation = -3431.514389 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25281 -38.98835 -37.75132 -36.37113 -33.86709 -32.08240 -31.71154 -30.02807 -28.74170 -26.06477 -25.81321 -23.88511 -23.02379 -21.98860 -21.76862 -20.39333 -19.57403 -18.88038 -17.53580 -17.40139 -16.74831 -16.42025 -15.75056 -15.08151 -14.79095 -14.13742 -14.01001 -13.73176 -13.38805 -13.29927 -13.12332 -12.95740 -12.75779 -12.65680 -12.35779 -12.12592 -11.98941 -11.67559 -11.56372 -11.39060 -11.28884 -11.21488 -10.72066 -10.59725 -10.56263 -10.46172 -10.39873 -10.28630 -10.07262 -9.72423 -9.51075 -9.24132 -8.72647 -8.28928 -8.14636 -6.38188 -3.98597 2.07774 2.55254 3.41584 3.46849 3.64956 3.86737 4.22913 4.40344 4.47364 4.55646 4.61260 4.80564 4.86656 5.06716 5.13005 5.18150 5.25683 5.38393 5.42457 5.45228 5.52076 5.63099 5.65928 5.70882 5.73621 5.81281 5.87388 5.95431 6.01055 6.09175 6.17803 6.26532 6.33009 6.41515 6.48372 6.61157 6.71696 6.79903 6.99050 7.05596 7.17535 7.35658 7.44906 7.64489 7.75548 8.27141 8.44503 8.97333 9.67720 10.98024 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.004557 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.975297 B = 6143.573933 C = 7009.694225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.331 6.331 4 C 0.499 3.501 5 O -0.510 6.510 6 C 0.097 3.903 7 N -0.662 5.662 8 C 0.092 3.908 9 C -0.101 4.101 10 C -0.100 4.100 11 C 0.023 3.977 12 C -0.600 4.600 13 H 0.053 0.947 14 C 0.033 3.967 15 N -0.907 5.907 16 Si 1.040 2.960 17 H -0.288 1.288 18 H -0.284 1.284 19 H -0.276 1.276 20 C -0.114 4.114 21 C -0.136 4.136 22 C -0.117 4.117 23 C -0.141 4.141 24 C -0.153 4.153 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.350 0.650 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.019 0.981 37 H 0.267 0.733 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.406 -4.459 21.994 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.247 6.247 4 C 0.341 3.659 5 O -0.397 6.397 6 C 0.003 3.997 7 N -0.294 5.294 8 C -0.017 4.017 9 C -0.140 4.140 10 C -0.138 4.138 11 C 0.003 3.997 12 C -0.637 4.637 13 H 0.072 0.928 14 C -0.172 4.172 15 N -0.541 5.541 16 Si 0.869 3.131 17 H -0.214 1.214 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.153 4.153 21 C -0.175 4.175 22 C -0.155 4.155 23 C -0.179 4.179 24 C -0.192 4.192 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.171 0.829 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.293 -3.577 21.525 21.822 hybrid contribution 0.608 -1.530 0.149 1.653 sum 0.902 -5.107 21.674 22.286 Atomic orbital electron populations 1.21784 0.92463 1.02697 1.03879 1.23057 0.95686 0.80649 1.02254 1.86629 1.23797 1.31399 1.82851 1.22713 0.80796 0.90666 0.71734 1.90653 1.61085 1.42653 1.45310 1.21957 0.91146 0.88429 0.98140 1.60385 1.55023 1.04916 1.09117 1.21606 0.97674 0.98022 0.84380 1.21568 0.94717 1.01358 0.96323 1.21475 1.00210 0.99589 0.92530 1.18953 0.90882 0.93859 0.95956 1.22007 1.48012 1.03112 0.90619 0.92843 1.25734 0.92500 1.04799 0.94169 1.70835 1.41224 1.21223 1.20798 0.84106 0.77046 0.76306 0.75639 1.21443 1.21083 1.20231 1.21957 1.01004 1.01076 0.91217 1.22165 0.98646 0.97757 0.98923 1.23053 0.96443 1.02292 0.93727 1.22843 0.97075 1.01836 0.96103 1.23599 0.94103 1.03522 0.98019 0.90461 0.91398 0.91178 0.91248 0.91643 0.82946 0.92538 0.92209 0.92662 0.92943 0.93645 0.96253 0.92304 0.93189 0.92324 0.91954 0.93530 0.88154 0.90632 0.89498 0.90564 0.90040 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 37.16 0.38 -0.96 16 2 C 0.06 0.65 6.25 37.16 0.23 0.88 16 3 O -0.33 -4.61 9.73 -39.26 -0.38 -4.99 16 4 C 0.50 7.22 6.17 36.00 0.22 7.45 16 5 O -0.51 -8.28 15.10 -18.75 -0.28 -8.56 16 6 C 0.10 1.19 1.00 -131.95 -0.13 1.06 16 7 N -0.66 -8.63 6.24 -93.40 -0.58 -9.21 16 8 C 0.09 1.46 1.97 -67.71 -0.13 1.32 16 9 C -0.10 -1.76 5.53 -26.73 -0.15 -1.91 16 10 C -0.10 -2.07 5.15 -26.73 -0.14 -2.21 16 11 C 0.02 0.53 1.69 -91.77 -0.16 0.37 16 12 C -0.60 -16.95 8.79 -34.44 -0.30 -17.25 16 13 H 0.05 1.64 7.99 -52.48 -0.42 1.22 16 14 C 0.03 0.95 5.29 -17.82 -0.09 0.86 16 15 N -0.91 -28.08 13.70 55.43 0.76 -27.32 16 16 Si 1.04 25.27 26.44 -169.99 -4.49 20.77 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.14 5.82 56.52 0.33 -5.81 16 20 C -0.11 -2.44 4.91 -26.73 -0.13 -2.57 16 21 C -0.14 -2.28 5.03 -26.73 -0.13 -2.42 16 22 C -0.12 -1.10 7.36 -25.92 -0.19 -1.29 16 23 C -0.14 -1.34 7.70 -25.92 -0.20 -1.54 16 24 C -0.15 -1.77 6.44 -25.92 -0.17 -1.94 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.35 3.94 7.90 -39.29 -0.31 3.63 16 31 H 0.06 0.99 6.86 -51.93 -0.36 0.64 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.93 7.77 -51.93 -0.40 0.53 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.02 0.46 6.74 -51.93 -0.35 0.11 16 37 H 0.27 8.26 8.73 -40.82 -0.36 7.90 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.33 5.16 -51.93 -0.27 1.06 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.69 7.69 -51.93 -0.40 0.29 16 42 H 0.10 0.76 7.99 -51.93 -0.41 0.35 16 43 H 0.07 0.69 8.10 -51.93 -0.42 0.26 16 44 H 0.09 0.92 7.69 -51.93 -0.40 0.52 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 1.10 7.60 -51.93 -0.39 0.71 16 47 H 0.10 1.01 7.69 -51.92 -0.40 0.61 16 LS Contribution 362.18 15.07 5.46 5.46 Total: -1.00 -31.47 362.18 -9.02 -40.49 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -8.41 Total: 3.51 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -1.09 Total: -20.14 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.18 Total: -36.53 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.67 Total: -13.56 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -4.49 Total: 20.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.47 -9.02 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.651 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds