Wall clock time and date at job start Tue Mar 31 2020 07:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45206 * 109.46916 * 2 1 4 4 C 1.34230 * 117.00253 * 183.28498 * 3 2 1 5 5 O 1.20829 * 119.99651 * 4.03371 * 4 3 2 6 6 C 1.50695 * 120.00101 * 184.03029 * 4 3 2 7 7 N 1.46893 * 112.85048 * 322.05733 * 6 4 3 8 8 C 1.46899 * 111.00612 * 293.65207 * 7 6 4 9 9 C 1.52996 * 109.47755 * 123.74048 * 8 7 6 10 10 C 1.52999 * 109.47546 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.46739 * 300.00038 * 10 9 8 12 12 C 1.50702 * 109.47126 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99909 * 354.19505 * 12 11 10 14 14 C 1.37882 * 120.00426 * 174.18879 * 12 11 10 15 15 N 1.31507 * 120.00055 * 158.93582 * 14 12 11 16 16 Si 1.86800 * 119.99446 * 339.21181 * 14 12 11 17 17 H 1.48503 * 109.46838 * 179.72433 * 16 14 12 18 18 H 1.48500 * 109.47312 * 299.72088 * 16 14 12 19 19 H 1.48496 * 109.47272 * 59.72332 * 16 14 12 20 20 C 1.52997 * 109.47593 * 59.99984 * 11 10 9 21 21 C 1.53001 * 109.46780 * 300.00007 * 20 11 10 22 22 C 1.53775 * 113.69495 * 93.33200 * 6 4 3 23 23 C 1.53787 * 87.08164 * 89.12399 * 22 6 4 24 24 C 1.53778 * 87.07961 * 25.43417 * 23 22 6 25 25 H 1.09002 * 109.46587 * 184.74274 * 1 2 3 26 26 H 1.08991 * 109.46940 * 304.74275 * 1 2 3 27 27 H 1.09002 * 109.47041 * 64.74227 * 1 2 3 28 28 H 1.09003 * 109.47228 * 240.00912 * 2 1 3 29 29 H 1.08993 * 109.47556 * 120.00051 * 2 1 3 30 30 H 1.00903 * 111.00300 * 169.68990 * 7 6 4 31 31 H 1.09004 * 109.46701 * 3.73311 * 8 7 6 32 32 H 1.08994 * 109.46897 * 59.99773 * 9 8 7 33 33 H 1.09004 * 109.46932 * 299.99858 * 9 8 7 34 34 H 1.08993 * 109.47564 * 179.97438 * 10 9 8 35 35 H 1.09004 * 109.47019 * 59.99196 * 10 9 8 36 36 H 1.09004 * 109.47175 * 299.99543 * 11 10 9 37 37 H 0.97000 * 120.00120 * 355.05231 * 15 14 12 38 38 H 1.09004 * 109.47220 * 59.99586 * 20 11 10 39 39 H 1.09000 * 109.47624 * 179.97438 * 20 11 10 40 40 H 1.08994 * 109.47408 * 299.99683 * 21 20 11 41 41 H 1.09003 * 109.46761 * 179.97438 * 21 20 11 42 42 H 1.08998 * 113.61622 * 203.67588 * 22 6 4 43 43 H 1.09005 * 113.60901 * 334.57853 * 22 6 4 44 44 H 1.09000 * 113.61029 * 270.88717 * 23 22 6 45 45 H 1.08997 * 113.68541 * 139.99797 * 23 22 6 46 46 H 1.09000 * 113.61505 * 220.01783 * 24 23 22 47 47 H 1.09007 * 113.68972 * 89.12606 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3428 1.5457 -0.0685 5 8 4.0730 0.5920 -0.2000 6 6 3.9240 2.9333 0.0184 7 7 3.1088 3.9378 -0.6775 8 6 3.1062 3.7012 -2.1273 9 6 1.6645 3.5529 -2.6174 10 6 1.6619 3.3059 -4.1273 11 6 2.3232 4.4881 -4.8386 12 6 2.3212 4.2446 -6.3258 13 1 1.9775 3.2987 -6.7177 14 6 2.7581 5.2294 -7.1863 15 7 3.1512 4.9143 -8.4010 16 14 2.7987 7.0103 -6.6239 17 1 3.3103 7.8655 -7.7248 18 1 1.4271 7.4447 -6.2562 19 1 3.6909 7.1364 -5.4436 20 6 3.7650 4.6365 -4.3486 21 6 3.7675 4.8835 -2.8386 22 6 4.3263 3.3466 1.4439 23 6 5.7042 2.7305 1.1492 24 6 5.4186 2.9986 -0.3378 25 1 -0.3632 -1.0242 0.0850 26 1 -0.3633 0.5856 0.8444 27 1 -0.3633 0.4385 -0.9294 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.4257 4.8717 -0.4640 31 1 3.6607 2.7889 -2.3476 32 1 1.1102 4.4651 -2.3972 33 1 1.1935 2.7103 -2.1110 34 1 0.6348 3.1997 -4.4764 35 1 2.2162 2.3934 -4.3472 36 1 1.7690 5.4006 -4.6187 37 1 3.2021 3.9832 -8.6680 38 1 4.3192 3.7240 -4.5684 39 1 4.2363 5.4785 -4.8556 40 1 3.2134 5.7959 -2.6187 41 1 4.7947 4.9888 -2.4895 42 1 4.3537 4.4258 1.5944 43 1 3.7717 2.8235 2.2230 44 1 5.7707 1.6711 1.3969 45 1 6.5372 3.3110 1.5455 46 1 5.7458 2.1947 -0.9972 47 1 5.7443 3.9824 -0.6759 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:57 Heat of formation + Delta-G solvation = -105.610481 kcal Electronic energy + Delta-G solvation = -25569.364785 eV Core-core repulsion = 22137.006253 eV Total energy + Delta-G solvation = -3432.358532 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.27211 -40.11515 -39.09515 -37.49173 -35.49617 -33.85575 -32.62469 -31.58964 -30.26615 -27.10286 -26.74149 -25.55073 -24.01334 -23.45803 -22.86616 -21.89970 -20.69759 -20.36747 -19.59930 -18.61941 -17.79015 -17.41880 -16.76566 -16.38367 -15.67929 -15.66125 -15.25324 -15.21316 -15.05156 -14.86189 -14.35141 -14.08947 -13.85069 -13.72594 -13.62263 -13.41862 -13.07712 -12.95753 -12.84981 -12.53469 -12.50068 -12.24091 -12.19020 -12.04035 -11.91592 -11.85569 -11.66779 -11.52938 -11.45154 -11.34527 -11.25652 -10.92707 -10.66223 -10.37780 -9.39418 -8.70935 -6.32374 1.00337 1.47319 1.55497 1.60824 1.75324 2.53383 2.83975 3.05258 3.39059 3.51836 3.59399 3.78542 3.83803 3.95532 4.01328 4.04294 4.19651 4.28491 4.33271 4.39699 4.50633 4.61683 4.68893 4.71978 4.73657 4.79638 4.82587 4.87033 4.89267 4.92764 4.94074 4.99600 5.04921 5.10590 5.16062 5.21376 5.30650 5.35547 5.42968 5.45300 5.59699 5.80871 5.88483 6.04337 6.20603 6.44748 6.60062 6.68954 7.43865 8.63445 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.004557 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.975297 B = 6143.573933 C = 7009.694225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.340 6.340 4 C 0.491 3.509 5 O -0.538 6.538 6 C 0.086 3.914 7 N -0.653 5.653 8 C 0.103 3.897 9 C -0.091 4.091 10 C -0.096 4.096 11 C 0.020 3.980 12 C -0.609 4.609 13 H 0.007 0.993 14 C -0.019 4.019 15 N -0.940 5.940 16 Si 1.082 2.918 17 H -0.293 1.293 18 H -0.264 1.264 19 H -0.237 1.237 20 C -0.111 4.111 21 C -0.127 4.127 22 C -0.102 4.102 23 C -0.133 4.133 24 C -0.156 4.156 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.367 0.633 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.023 0.977 36 H 0.030 0.970 37 H 0.249 0.751 38 H 0.027 0.973 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.129 0.871 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.052 0.948 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 -1.992 25.768 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.256 6.256 4 C 0.335 3.665 5 O -0.427 6.427 6 C -0.007 4.007 7 N -0.287 5.287 8 C -0.007 4.007 9 C -0.129 4.129 10 C -0.134 4.134 11 C 0.001 3.999 12 C -0.646 4.646 13 H 0.026 0.974 14 C -0.217 4.217 15 N -0.576 5.576 16 Si 0.902 3.098 17 H -0.220 1.220 18 H -0.189 1.189 19 H -0.161 1.161 20 C -0.150 4.150 21 C -0.165 4.165 22 C -0.139 4.139 23 C -0.171 4.171 24 C -0.195 4.195 25 H 0.119 0.881 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.190 0.810 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.147 0.853 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.120 0.880 46 H 0.071 0.929 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.350 -1.127 25.335 25.362 hybrid contribution 0.537 -2.482 -1.100 2.767 sum 0.887 -3.609 24.235 24.518 Atomic orbital electron populations 1.21794 0.90475 1.04289 1.03565 1.23290 0.97256 0.79737 1.02106 1.86623 1.23624 1.32748 1.82566 1.23287 0.80818 0.91493 0.70918 1.90635 1.61632 1.43814 1.46654 1.22169 0.91068 0.87081 1.00428 1.60222 1.55693 1.06038 1.06716 1.21321 0.96010 0.96903 0.86446 1.21437 0.96233 1.02064 0.93142 1.21375 0.98994 0.97681 0.95345 1.18957 0.92960 0.95100 0.92838 1.22294 1.47183 1.01176 0.93956 0.97419 1.27298 0.91509 1.09374 0.93514 1.70975 1.44183 1.19980 1.22476 0.83623 0.78932 0.70632 0.76587 1.21985 1.18934 1.16097 1.21783 0.98540 0.99640 0.94997 1.22083 1.00889 0.98633 0.94916 1.23100 0.95461 1.03999 0.91367 1.22786 0.98410 1.01438 0.94473 1.23658 0.93537 1.03391 0.98944 0.88134 0.90586 0.92310 0.92759 0.90491 0.81038 0.94817 0.90890 0.92309 0.93809 0.95791 0.95210 0.94195 0.95427 0.93281 0.89967 0.90772 0.85262 0.90238 0.91106 0.88033 0.92935 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 10.29 71.98 0.74 -1.63 16 2 C 0.05 1.10 6.25 71.98 0.45 1.55 16 3 O -0.34 -9.15 9.73 -51.41 -0.50 -9.65 16 4 C 0.49 13.85 6.17 71.23 0.44 14.29 16 5 O -0.54 -17.70 15.10 21.95 0.33 -17.37 16 6 C 0.09 1.90 1.00 3.31 0.00 1.90 16 7 N -0.65 -14.66 6.24 -449.40 -2.80 -17.47 16 8 C 0.10 3.03 1.97 44.91 0.09 3.12 16 9 C -0.09 -2.99 5.53 30.59 0.17 -2.82 16 10 C -0.10 -4.01 5.15 30.59 0.16 -3.85 16 11 C 0.02 0.95 1.69 -11.54 -0.02 0.93 16 12 C -0.61 -35.63 8.79 25.60 0.22 -35.41 16 13 H 0.01 0.49 7.99 -2.91 -0.02 0.46 16 14 C -0.02 -1.15 5.29 84.66 0.45 -0.70 16 15 N -0.94 -60.46 13.70 21.45 0.29 -60.17 16 16 Si 1.08 49.74 26.44 68.60 1.81 51.56 16 17 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 18 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.24 -9.40 5.82 99.48 0.58 -8.82 16 20 C -0.11 -4.61 4.91 30.59 0.15 -4.46 16 21 C -0.13 -3.79 5.03 30.60 0.15 -3.63 16 22 C -0.10 -1.49 7.36 31.12 0.23 -1.27 16 23 C -0.13 -2.16 7.70 31.12 0.24 -1.92 16 24 C -0.16 -3.25 6.44 31.12 0.20 -3.05 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 1.34 8.03 -2.39 -0.02 1.32 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.37 6.28 7.90 -89.69 -0.71 5.57 16 31 H 0.03 1.16 6.86 -2.38 -0.02 1.15 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.06 1.91 7.77 -2.38 -0.02 1.89 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.03 1.35 6.74 -2.39 -0.02 1.33 16 37 H 0.25 16.38 8.73 -92.71 -0.81 15.58 16 38 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.05 2.11 5.16 -2.39 -0.01 2.10 16 40 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.07 1.85 7.69 -2.39 -0.02 1.84 16 42 H 0.13 1.21 7.99 -2.39 -0.02 1.19 16 43 H 0.08 1.15 8.10 -2.38 -0.02 1.13 16 44 H 0.07 1.39 7.69 -2.39 -0.02 1.37 16 45 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.05 1.40 7.60 -2.39 -0.02 1.39 16 47 H 0.11 1.94 7.69 -2.38 -0.02 1.92 16 Total: -1.00 -72.63 362.18 2.87 -69.75 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.06 Total: 20.31 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 3.68 Total: -36.96 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -2.51 Total: -77.63 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.17 Total: -27.02 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 1.81 Total: 51.56 kcal Total: -72.63 2.87 -69.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.857 kcal (2) G-P(sol) polarization free energy of solvation -72.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds