Wall clock time and date at job start Tue Mar 31 2020 08:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45193 * 109.46665 * 2 1 4 4 C 1.34231 * 117.00126 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99644 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00640 * 179.71955 * 4 3 2 7 7 H 1.08996 * 110.63229 * 303.38705 * 6 4 3 8 8 C 1.55143 * 110.70232 * 66.67838 * 6 4 3 9 9 C 1.54900 * 101.65342 * 154.03688 * 8 6 4 10 10 N 1.47837 * 104.79821 * 322.92990 * 9 8 6 11 11 C 1.46901 * 111.00450 * 146.36425 * 10 9 8 12 12 C 1.52998 * 109.47506 * 174.16036 * 11 10 9 13 13 C 1.52999 * 109.47124 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47448 * 59.99724 * 13 12 11 15 15 C 1.50699 * 109.46804 * 59.99874 * 14 13 12 16 16 H 1.08004 * 120.00197 * 239.99760 * 15 14 13 17 17 C 1.37877 * 120.00361 * 60.00337 * 15 14 13 18 18 N 1.31519 * 119.99388 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00527 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46870 * 89.99741 * 19 17 15 21 21 H 1.48501 * 109.47420 * 209.99995 * 19 17 15 22 22 H 1.48502 * 109.47253 * 330.00376 * 19 17 15 23 23 C 1.52998 * 109.47183 * 300.00239 * 14 13 12 24 24 C 1.52998 * 109.47494 * 59.99539 * 23 14 13 25 25 C 1.47439 * 108.56794 * 24.09493 * 10 9 8 26 26 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47361 * 299.99752 * 1 2 3 28 28 H 1.08997 * 109.47194 * 60.00320 * 1 2 3 29 29 H 1.08997 * 109.46911 * 239.99961 * 2 1 3 30 30 H 1.08997 * 109.46745 * 119.99970 * 2 1 3 31 31 H 1.09005 * 110.99457 * 272.12776 * 8 6 4 32 32 H 1.09001 * 110.99204 * 35.94308 * 8 6 4 33 33 H 1.09006 * 110.37507 * 204.09833 * 9 8 6 34 34 H 1.09002 * 110.37701 * 81.75926 * 9 8 6 35 35 H 1.09006 * 109.47009 * 294.16263 * 11 10 9 36 36 H 1.09000 * 109.46780 * 299.99923 * 12 11 10 37 37 H 1.08995 * 109.47111 * 60.00030 * 12 11 10 38 38 H 1.09000 * 109.47217 * 299.99640 * 13 12 11 39 39 H 1.09004 * 109.47163 * 179.97438 * 13 12 11 40 40 H 1.09004 * 109.47348 * 179.97438 * 14 13 12 41 41 H 0.97007 * 119.99511 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.47347 * 299.99966 * 23 14 13 43 43 H 1.09000 * 109.47519 * 179.97438 * 23 14 13 44 44 H 1.08995 * 109.47774 * 180.02562 * 24 23 14 45 45 H 1.09006 * 109.46985 * 59.99796 * 24 23 14 46 46 H 1.09000 * 109.89114 * 239.60715 * 25 10 9 47 47 H 1.08999 * 110.02563 * 118.48839 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 -0.0058 7 1 3.5497 3.5026 -0.8608 8 6 3.5980 3.6705 1.3229 9 6 4.7607 4.6904 1.4079 10 7 5.9362 3.9680 0.8768 11 6 6.8368 4.8819 0.1614 12 6 8.1064 4.1316 -0.2461 13 6 9.0446 5.0836 -0.9907 14 6 9.4146 6.2535 -0.0767 15 6 10.1055 5.7291 1.1556 16 1 9.6815 5.9127 2.1318 17 6 11.2790 5.0151 1.0369 18 7 11.7951 4.7913 -0.1519 19 14 12.1358 4.3657 2.5645 20 1 11.6298 3.0046 2.8749 21 1 13.5999 4.3065 2.3234 22 1 11.8588 5.2698 3.7096 23 6 8.1449 7.0038 0.3307 24 6 7.2067 6.0518 1.0753 25 6 5.4631 2.8900 -0.0108 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.6358 4.1794 1.2644 32 1 3.6220 2.9798 2.1657 33 1 4.9323 4.9849 2.4433 34 1 4.5440 5.5651 0.7947 35 1 6.3367 5.2608 -0.7300 36 1 8.6064 3.7527 0.6453 37 1 7.8427 3.2980 -0.8969 38 1 8.5448 5.4629 -1.8820 39 1 9.9493 4.5493 -1.2806 40 1 10.0833 6.9315 -0.6071 41 1 12.6209 4.2893 -0.2353 42 1 7.6451 7.3830 -0.5606 43 1 8.4085 7.8370 0.9822 44 1 6.3020 6.5861 1.3652 45 1 7.7065 5.6725 1.9667 46 1 5.8056 1.9250 0.3627 47 1 5.8356 3.0492 -1.0227 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173336547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:42 Heat of formation + Delta-G solvation = -101.184012 kcal Electronic energy + Delta-G solvation = -24856.899833 eV Core-core repulsion = 21424.733247 eV Total energy + Delta-G solvation = -3432.166586 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.85225 -39.17783 -37.09476 -36.42454 -32.97576 -32.04490 -31.17161 -30.06515 -28.67193 -27.81487 -24.83856 -24.13998 -22.64322 -22.06922 -21.13078 -20.27472 -19.67516 -18.65471 -17.97477 -16.83453 -16.66729 -15.98440 -15.66786 -14.72759 -14.48818 -14.41243 -13.96084 -13.65588 -13.39281 -13.21302 -12.97117 -12.94923 -12.71992 -12.38653 -12.27440 -12.02796 -11.81205 -11.50958 -11.36031 -11.03213 -10.96870 -10.88382 -10.85251 -10.79558 -10.77897 -10.50127 -10.39905 -10.25696 -10.01245 -9.55103 -9.12666 -8.78955 -8.54214 -8.19704 -7.94510 -5.88522 -3.92087 2.06533 2.44114 3.38093 3.44740 3.47528 4.15455 4.37881 4.44146 4.53062 4.60690 4.65610 4.73391 4.94991 4.96696 5.26470 5.32676 5.38338 5.42444 5.43351 5.60486 5.62319 5.66303 5.68876 5.75213 5.97483 6.01185 6.06204 6.20208 6.29341 6.30040 6.49285 6.55162 6.61912 6.76267 6.79779 6.87187 7.13442 7.26317 7.32469 7.43512 7.60845 7.61309 7.73100 7.82811 8.01251 8.23784 8.57058 9.09826 9.70981 11.17556 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.024167 B = 0.003385 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.313174 B = 8269.574008 C = 8668.831099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.474 3.526 5 O -0.501 6.501 6 C -0.107 4.107 7 H 0.111 0.889 8 C -0.114 4.114 9 C 0.044 3.956 10 N -0.520 5.520 11 C 0.089 3.911 12 C -0.091 4.091 13 C -0.107 4.107 14 C 0.043 3.957 15 C -0.497 4.497 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.884 3.116 20 H -0.281 1.281 21 H -0.289 1.289 22 H -0.276 1.276 23 C -0.106 4.106 24 C -0.099 4.099 25 C 0.055 3.945 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.027 0.973 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.010 0.990 39 H 0.092 0.908 40 H 0.023 0.977 41 H 0.258 0.742 42 H 0.030 0.970 43 H 0.047 0.953 44 H 0.035 0.965 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.432 -4.697 -0.398 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.316 3.684 5 O -0.387 6.387 6 C -0.127 4.127 7 H 0.129 0.871 8 C -0.152 4.152 9 C -0.084 4.084 10 N -0.244 5.244 11 C -0.019 4.019 12 C -0.129 4.129 13 C -0.146 4.146 14 C 0.025 3.975 15 C -0.535 4.535 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.713 3.287 20 H -0.207 1.207 21 H -0.215 1.215 22 H -0.201 1.201 23 C -0.144 4.144 24 C -0.137 4.137 25 C -0.073 4.073 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.029 0.971 39 H 0.111 0.889 40 H 0.041 0.959 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.097 0.903 46 H 0.113 0.887 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.777 -5.313 -0.068 21.446 hybrid contribution 0.050 -0.308 0.032 0.313 sum -20.727 -5.621 -0.037 21.476 Atomic orbital electron populations 1.21802 0.92634 1.02939 1.03514 1.23027 0.95336 0.80377 1.02675 1.86511 1.24690 1.32266 1.84125 1.23505 0.80376 0.92469 0.72047 1.90679 1.60272 1.42967 1.44822 1.22383 0.98320 0.90210 1.01799 0.87140 1.22711 0.99373 0.98125 0.94981 1.23039 0.88618 0.95304 1.01404 1.63772 1.14474 1.11529 1.34628 1.21923 0.93493 0.92625 0.93849 1.21431 0.93829 0.96738 1.00897 1.21526 0.98863 0.98647 0.95537 1.18694 0.90869 0.92796 0.95152 1.21132 1.06517 1.33245 0.92599 0.92672 1.24926 0.97207 0.96400 0.95453 1.69872 1.20399 1.41193 1.21792 0.86714 0.78701 0.79467 0.83854 1.20716 1.21520 1.20077 1.21552 0.97749 0.97491 0.97612 1.21501 0.97633 0.94830 0.99707 1.22874 0.88749 0.98195 0.97480 0.90271 0.91453 0.91497 0.91247 0.91193 0.89857 0.90287 0.89733 0.93214 0.95530 0.90179 0.95080 0.97085 0.88931 0.95867 0.93250 0.95087 0.93400 0.94601 0.90270 0.88727 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.36 -3.98 10.22 -39.26 -0.40 -4.38 16 4 C 0.47 6.11 7.26 36.00 0.26 6.37 16 5 O -0.50 -7.93 15.17 -18.76 -0.28 -8.21 16 6 C -0.11 -1.27 3.45 -89.95 -0.31 -1.58 16 7 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 8 C -0.11 -1.22 6.51 -24.59 -0.16 -1.38 16 9 C 0.04 0.57 5.33 -2.31 -0.01 0.55 16 10 N -0.52 -8.42 5.03 -223.30 -1.12 -9.54 16 11 C 0.09 1.61 1.51 -67.71 -0.10 1.51 16 12 C -0.09 -1.94 4.94 -26.73 -0.13 -2.08 16 13 C -0.11 -2.52 5.24 -26.73 -0.14 -2.66 16 14 C 0.04 1.06 2.59 -91.77 -0.24 0.82 16 15 C -0.50 -13.25 6.61 -34.44 -0.23 -13.48 16 16 H 0.06 1.47 6.71 -52.48 -0.35 1.12 16 17 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 19 Si 0.88 21.55 29.54 -169.99 -5.02 16.53 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C -0.11 -2.17 5.41 -26.73 -0.14 -2.32 16 24 C -0.10 -1.86 4.76 -26.73 -0.13 -1.99 16 25 C 0.05 0.82 5.59 -2.84 -0.02 0.81 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.61 7.33 -51.93 -0.38 0.23 16 35 H 0.03 0.48 8.10 -51.93 -0.42 0.05 16 36 H 0.08 1.95 7.21 -51.93 -0.37 1.57 16 37 H 0.03 0.62 6.82 -51.93 -0.35 0.27 16 38 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 40 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.03 0.59 8.14 -51.92 -0.42 0.16 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.04 0.58 6.74 -51.93 -0.35 0.23 16 45 H 0.08 1.66 6.62 -51.93 -0.34 1.32 16 46 H 0.09 1.59 6.81 -51.93 -0.35 1.24 16 47 H 0.06 0.99 6.67 -51.93 -0.35 0.64 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -29.57 356.67 -9.87 -39.44 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -8.22 Total: -0.74 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.83 Total: -13.62 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: -0.50 Total: -34.40 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.69 Total: -12.59 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.57 -9.87 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173336547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.743 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds