Wall clock time and date at job start Tue Mar 31 2020 08:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.47297 * 2 1 4 4 C 1.34231 * 117.00025 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99677 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00139 * 180.02562 * 4 3 2 7 7 H 1.08996 * 110.42478 * 57.67908 * 6 4 3 8 8 C 1.54906 * 110.37019 * 295.37083 * 6 4 3 9 9 C 1.55138 * 101.65573 * 204.10217 * 8 6 4 10 10 C 1.54318 * 103.01792 * 35.65159 * 9 8 6 11 11 N 1.47446 * 107.23303 * 337.71992 * 10 9 8 12 12 C 1.46897 * 110.99737 * 236.74038 * 11 10 9 13 13 C 1.53001 * 109.47385 * 55.12748 * 12 11 10 14 14 C 1.52997 * 109.47100 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47345 * 59.99878 * 14 13 12 16 16 C 1.50704 * 109.46946 * 60.00003 * 15 14 13 17 17 H 1.08007 * 119.99556 * 240.00113 * 16 15 14 18 18 C 1.37872 * 120.00267 * 59.99812 * 16 15 14 19 19 N 1.31514 * 119.99875 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00334 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47017 * 90.00095 * 20 18 16 22 22 H 1.48493 * 109.47254 * 210.00303 * 20 18 16 23 23 H 1.48505 * 109.46960 * 330.00395 * 20 18 16 24 24 C 1.53001 * 109.47121 * 300.00109 * 15 14 13 25 25 C 1.52997 * 109.47100 * 59.99741 * 24 15 14 26 26 H 1.09006 * 109.46849 * 300.00176 * 1 2 3 27 27 H 1.09000 * 109.46927 * 59.99623 * 1 2 3 28 28 H 1.08996 * 109.47216 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47020 * 239.99894 * 2 1 3 30 30 H 1.09000 * 109.46927 * 120.00376 * 2 1 3 31 31 H 1.09006 * 110.99331 * 322.19460 * 8 6 4 32 32 H 1.08997 * 110.99309 * 86.00696 * 8 6 4 33 33 H 1.09003 * 110.70420 * 277.27538 * 9 8 6 34 34 H 1.09002 * 110.71153 * 154.03527 * 9 8 6 35 35 H 1.08996 * 109.89415 * 218.31078 * 10 9 8 36 36 H 1.09001 * 109.88767 * 97.12302 * 10 9 8 37 37 H 1.09001 * 109.46990 * 175.12626 * 12 11 10 38 38 H 1.09001 * 109.46957 * 299.99898 * 13 12 11 39 39 H 1.08999 * 109.47193 * 59.99576 * 13 12 11 40 40 H 1.09001 * 109.47274 * 299.99877 * 14 13 12 41 41 H 1.09006 * 109.46906 * 179.97438 * 14 13 12 42 42 H 1.08996 * 109.47311 * 179.97438 * 15 14 13 43 43 H 0.97002 * 119.99855 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46957 * 299.99670 * 24 15 14 45 45 H 1.08999 * 109.47193 * 179.97438 * 24 15 14 46 46 H 1.09006 * 109.46906 * 180.02562 * 25 24 15 47 47 H 1.09001 * 109.47274 * 60.00123 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9209 2.9373 0.0000 7 1 3.5620 3.4970 0.8637 8 6 3.5514 3.6742 -1.3115 9 6 4.6829 4.7313 -1.4065 10 6 5.9079 3.9808 -0.8430 11 7 5.3983 2.8831 -0.0007 12 6 5.9292 2.9780 1.3656 13 6 5.6088 4.3583 1.9427 14 6 6.1613 4.4569 3.3660 15 6 7.6776 4.2545 3.3397 16 6 8.3114 5.3178 2.4801 17 1 8.8854 5.0370 1.6093 18 6 8.1586 6.6489 2.8052 19 7 7.4601 6.9907 3.8658 20 14 8.9436 7.9669 1.7394 21 1 7.9920 8.3741 0.6746 22 1 9.2820 9.1449 2.5777 23 1 10.1808 7.4293 1.1184 24 6 7.9981 2.8742 2.7627 25 6 7.4456 2.7757 1.3393 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.5799 2.9941 -2.1629 32 1 2.5757 4.1530 -1.2288 33 1 4.4492 5.6021 -0.7940 34 1 4.8526 5.0222 -2.4432 35 1 6.5140 4.6587 -0.2420 36 1 6.5027 3.5748 -1.6612 37 1 5.4712 2.2090 1.9876 38 1 6.0669 5.1274 1.3207 39 1 4.5285 4.5023 1.9618 40 1 5.7029 3.6878 3.9877 41 1 5.9334 5.4404 3.7769 42 1 8.0713 4.3252 4.3536 43 1 7.3522 7.9272 4.0944 44 1 7.5397 2.1052 3.3844 45 1 9.0783 2.7302 2.7435 46 1 7.6735 1.7921 0.9284 47 1 7.9040 3.5447 0.7176 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:06 Heat of formation + Delta-G solvation = -94.321712 kcal Electronic energy + Delta-G solvation = -25739.329959 eV Core-core repulsion = 22307.460945 eV Total energy + Delta-G solvation = -3431.869014 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.63488 -39.22766 -36.75680 -36.19660 -32.83631 -31.90368 -31.08940 -29.70481 -29.38219 -27.51923 -24.67855 -24.14815 -22.55951 -21.81355 -21.49146 -20.51701 -19.46578 -18.37697 -17.62005 -16.56194 -16.26106 -16.03088 -15.63470 -14.89919 -14.50826 -14.14403 -13.87240 -13.60360 -13.32759 -13.17717 -12.90114 -12.84663 -12.66448 -12.19573 -12.03091 -11.85498 -11.70544 -11.57605 -11.29983 -11.02593 -10.96007 -10.95555 -10.80441 -10.63309 -10.55317 -10.52336 -10.13973 -10.11590 -10.01507 -9.68179 -9.17716 -8.93708 -8.62708 -8.30264 -7.79252 -5.96199 -4.00648 2.41173 2.61380 3.27838 3.36413 3.39386 4.27246 4.43878 4.60041 4.65553 4.77731 4.84035 5.02839 5.08312 5.11897 5.32485 5.35040 5.52311 5.56248 5.59100 5.64491 5.73770 5.77869 5.82450 5.92761 5.98536 6.09084 6.20857 6.32177 6.40855 6.42949 6.48195 6.50662 6.55768 6.76166 6.79159 6.91655 7.07005 7.17272 7.25265 7.44983 7.51586 7.58419 7.76368 7.96134 8.00041 8.16828 8.50647 9.02338 9.62403 11.09477 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022045 B = 0.004398 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.840715 B = 6364.470009 C = 6772.765387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.364 6.364 4 C 0.468 3.532 5 O -0.485 6.485 6 C 0.076 3.924 7 H 0.098 0.902 8 C -0.112 4.112 9 C -0.140 4.140 10 C 0.036 3.964 11 N -0.507 5.507 12 C 0.087 3.913 13 C -0.132 4.132 14 C -0.104 4.104 15 C 0.043 3.957 16 C -0.500 4.500 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.881 3.119 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.107 4.107 25 C -0.093 4.093 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.030 0.970 40 H 0.013 0.987 41 H 0.090 0.910 42 H 0.024 0.976 43 H 0.258 0.742 44 H 0.033 0.967 45 H 0.048 0.952 46 H 0.045 0.955 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.136 -8.129 -9.008 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.281 6.281 4 C 0.309 3.691 5 O -0.370 6.370 6 C -0.034 4.034 7 H 0.115 0.885 8 C -0.150 4.150 9 C -0.179 4.179 10 C -0.092 4.092 11 N -0.231 5.231 12 C -0.021 4.021 13 C -0.170 4.170 14 C -0.142 4.142 15 C 0.025 3.975 16 C -0.538 4.538 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.710 3.290 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.145 4.145 25 C -0.131 4.131 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.031 0.969 41 H 0.109 0.891 42 H 0.042 0.958 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.801 -8.793 -9.114 17.311 hybrid contribution 0.120 1.324 -0.129 1.335 sum -11.681 -7.469 -9.244 16.664 Atomic orbital electron populations 1.21794 0.92826 1.02745 1.03463 1.22951 0.95130 0.80719 1.02442 1.86500 1.25060 1.31940 1.84635 1.23675 0.80049 0.92714 0.72709 1.90643 1.60211 1.42617 1.43493 1.22103 0.91162 0.89082 1.01073 0.88459 1.22617 0.99468 0.97500 0.95414 1.22819 0.94974 0.98124 1.01969 1.22939 0.97031 0.92001 0.97179 1.63272 1.02308 1.44740 1.12748 1.21889 0.96646 0.97086 0.86472 1.22082 0.97467 0.97160 1.00332 1.21451 0.98068 1.01687 0.93009 1.18692 0.92175 0.90423 0.96215 1.21165 1.31283 0.90593 1.10752 0.92674 1.24935 0.95412 0.98493 0.95108 1.69872 1.40633 1.16819 1.25693 0.86762 0.79895 0.81857 0.80532 1.20817 1.21393 1.19960 1.21553 0.98893 0.99074 0.94962 1.21392 0.93004 1.00352 0.98311 0.91480 0.91572 0.90446 0.91470 0.91411 0.90623 0.89891 0.90748 0.90575 0.89666 0.90786 0.91615 0.90245 0.95162 0.96873 0.89124 0.95805 0.93209 0.94858 0.93356 0.93616 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 37.16 0.38 -0.75 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.36 -4.86 10.22 -39.26 -0.40 -5.26 16 4 C 0.47 7.32 7.30 36.00 0.26 7.59 16 5 O -0.49 -9.00 16.23 -18.75 -0.30 -9.31 16 6 C 0.08 1.13 2.72 -67.34 -0.18 0.95 16 7 H 0.10 1.47 5.90 -51.93 -0.31 1.16 16 8 C -0.11 -1.35 6.48 -24.59 -0.16 -1.51 16 9 C -0.14 -1.78 6.94 -24.91 -0.17 -1.95 16 10 C 0.04 0.55 5.60 -2.83 -0.02 0.53 16 11 N -0.51 -8.58 4.34 -216.84 -0.94 -9.52 16 12 C 0.09 1.63 2.17 -67.71 -0.15 1.49 16 13 C -0.13 -2.66 4.42 -26.73 -0.12 -2.77 16 14 C -0.10 -2.38 5.24 -26.73 -0.14 -2.52 16 15 C 0.04 1.05 2.59 -91.77 -0.24 0.81 16 16 C -0.50 -12.93 6.61 -34.44 -0.23 -13.16 16 17 H 0.06 1.42 6.71 -52.48 -0.35 1.07 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 19 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 20 Si 0.88 20.61 29.54 -169.99 -5.02 15.59 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 24 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 25 C -0.09 -1.83 4.93 -26.73 -0.13 -1.96 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.08 0.89 8.05 -51.93 -0.42 0.48 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.51 4.76 -51.93 -0.25 1.26 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.31 8.13 -51.93 -0.42 0.88 16 38 H 0.08 1.73 5.14 -51.93 -0.27 1.46 16 39 H 0.03 0.56 6.28 -51.93 -0.33 0.24 16 40 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 42 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 1.45 5.29 -51.93 -0.27 1.18 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -28.92 353.76 -9.59 -38.51 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.98 Total: 1.93 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.90 Total: -13.24 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: -0.31 Total: -33.56 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.71 Total: -14.57 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.92 -9.59 -38.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.810 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds