Wall clock time and date at job start Tue Mar 31 2020 08:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.47297 * 2 1 4 4 C 1.34231 * 117.00025 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99677 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00139 * 180.02562 * 4 3 2 7 7 H 1.08996 * 110.42478 * 57.67908 * 6 4 3 8 8 C 1.54906 * 110.37019 * 295.37083 * 6 4 3 9 9 C 1.55138 * 101.65573 * 204.10217 * 8 6 4 10 10 C 1.54318 * 103.01792 * 35.65159 * 9 8 6 11 11 N 1.47446 * 107.23303 * 337.71992 * 10 9 8 12 12 C 1.46897 * 110.99737 * 236.74038 * 11 10 9 13 13 C 1.53001 * 109.47385 * 55.12748 * 12 11 10 14 14 C 1.52997 * 109.47100 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47345 * 59.99878 * 14 13 12 16 16 C 1.50704 * 109.46946 * 60.00003 * 15 14 13 17 17 H 1.08007 * 119.99556 * 240.00113 * 16 15 14 18 18 C 1.37872 * 120.00267 * 59.99812 * 16 15 14 19 19 N 1.31514 * 119.99875 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00334 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47017 * 90.00095 * 20 18 16 22 22 H 1.48493 * 109.47254 * 210.00303 * 20 18 16 23 23 H 1.48505 * 109.46960 * 330.00395 * 20 18 16 24 24 C 1.53001 * 109.47121 * 300.00109 * 15 14 13 25 25 C 1.52997 * 109.47100 * 59.99741 * 24 15 14 26 26 H 1.09006 * 109.46849 * 300.00176 * 1 2 3 27 27 H 1.09000 * 109.46927 * 59.99623 * 1 2 3 28 28 H 1.08996 * 109.47216 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47020 * 239.99894 * 2 1 3 30 30 H 1.09000 * 109.46927 * 120.00376 * 2 1 3 31 31 H 1.09006 * 110.99331 * 322.19460 * 8 6 4 32 32 H 1.08997 * 110.99309 * 86.00696 * 8 6 4 33 33 H 1.09003 * 110.70420 * 277.27538 * 9 8 6 34 34 H 1.09002 * 110.71153 * 154.03527 * 9 8 6 35 35 H 1.08996 * 109.89415 * 218.31078 * 10 9 8 36 36 H 1.09001 * 109.88767 * 97.12302 * 10 9 8 37 37 H 1.09001 * 109.46990 * 175.12626 * 12 11 10 38 38 H 1.09001 * 109.46957 * 299.99898 * 13 12 11 39 39 H 1.08999 * 109.47193 * 59.99576 * 13 12 11 40 40 H 1.09001 * 109.47274 * 299.99877 * 14 13 12 41 41 H 1.09006 * 109.46906 * 179.97438 * 14 13 12 42 42 H 1.08996 * 109.47311 * 179.97438 * 15 14 13 43 43 H 0.97002 * 119.99855 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46957 * 299.99670 * 24 15 14 45 45 H 1.08999 * 109.47193 * 179.97438 * 24 15 14 46 46 H 1.09006 * 109.46906 * 180.02562 * 25 24 15 47 47 H 1.09001 * 109.47274 * 60.00123 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9209 2.9373 0.0000 7 1 3.5620 3.4970 0.8637 8 6 3.5514 3.6742 -1.3115 9 6 4.6829 4.7313 -1.4065 10 6 5.9079 3.9808 -0.8430 11 7 5.3983 2.8831 -0.0007 12 6 5.9292 2.9780 1.3656 13 6 5.6088 4.3583 1.9427 14 6 6.1613 4.4569 3.3660 15 6 7.6776 4.2545 3.3397 16 6 8.3114 5.3178 2.4801 17 1 8.8854 5.0370 1.6093 18 6 8.1586 6.6489 2.8052 19 7 7.4601 6.9907 3.8658 20 14 8.9436 7.9669 1.7394 21 1 7.9920 8.3741 0.6746 22 1 9.2820 9.1449 2.5777 23 1 10.1808 7.4293 1.1184 24 6 7.9981 2.8742 2.7627 25 6 7.4456 2.7757 1.3393 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.5799 2.9941 -2.1629 32 1 2.5757 4.1530 -1.2288 33 1 4.4492 5.6021 -0.7940 34 1 4.8526 5.0222 -2.4432 35 1 6.5140 4.6587 -0.2420 36 1 6.5027 3.5748 -1.6612 37 1 5.4712 2.2090 1.9876 38 1 6.0669 5.1274 1.3207 39 1 4.5285 4.5023 1.9618 40 1 5.7029 3.6878 3.9877 41 1 5.9334 5.4404 3.7769 42 1 8.0713 4.3252 4.3536 43 1 7.3522 7.9272 4.0944 44 1 7.5397 2.1052 3.3844 45 1 9.0783 2.7302 2.7435 46 1 7.6735 1.7921 0.9284 47 1 7.9040 3.5447 0.7176 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:06 Heat of formation + Delta-G solvation = -109.428343 kcal Electronic energy + Delta-G solvation = -25739.985032 eV Core-core repulsion = 22307.460945 eV Total energy + Delta-G solvation = -3432.524087 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85646 -40.56589 -38.25018 -37.41935 -34.62211 -32.84296 -32.55489 -31.33702 -30.61265 -29.11270 -26.60666 -25.18962 -23.64604 -23.34985 -22.78024 -21.85173 -20.95154 -20.01685 -18.79257 -17.76709 -17.64630 -17.42627 -17.06275 -16.67239 -16.06610 -15.29562 -15.16029 -14.95133 -14.81569 -14.60743 -14.30307 -14.10436 -13.66463 -13.60031 -13.22219 -13.16586 -12.90980 -12.85767 -12.76861 -12.69226 -12.47630 -12.41220 -12.26775 -12.11204 -12.02540 -11.78783 -11.61185 -11.49889 -11.47085 -11.27135 -10.97215 -10.74439 -10.51163 -10.31631 -9.19383 -8.00713 -6.11202 1.21494 1.41755 1.45050 1.53119 1.55898 2.47427 3.02725 3.27166 3.53469 3.57206 3.91120 3.99390 4.02255 4.05829 4.11594 4.16033 4.26851 4.36187 4.41457 4.55005 4.63988 4.69404 4.74140 4.81703 4.86759 4.87272 4.93677 4.94267 4.95490 5.03841 5.05436 5.10696 5.15842 5.22015 5.31309 5.41238 5.46768 5.49154 5.59207 5.65584 5.71564 5.92035 6.03813 6.13571 6.21603 6.47723 6.83601 6.97936 7.54702 9.04002 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022045 B = 0.004398 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.840715 B = 6364.470009 C = 6772.765387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 O -0.361 6.361 4 C 0.472 3.528 5 O -0.521 6.521 6 C 0.069 3.931 7 H 0.097 0.903 8 C -0.101 4.101 9 C -0.133 4.133 10 C 0.033 3.967 11 N -0.515 5.515 12 C 0.099 3.901 13 C -0.118 4.118 14 C -0.100 4.100 15 C 0.040 3.960 16 C -0.504 4.504 17 H 0.054 0.946 18 C 0.017 3.983 19 N -0.919 5.919 20 Si 0.939 3.061 21 H -0.272 1.272 22 H -0.291 1.291 23 H -0.271 1.271 24 C -0.102 4.102 25 C -0.085 4.085 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.019 0.981 41 H 0.061 0.939 42 H -0.013 1.013 43 H 0.257 0.743 44 H 0.042 0.958 45 H 0.048 0.952 46 H 0.054 0.946 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.582 -8.324 -11.099 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.278 6.278 4 C 0.314 3.686 5 O -0.408 6.408 6 C -0.041 4.041 7 H 0.114 0.886 8 C -0.139 4.139 9 C -0.172 4.172 10 C -0.094 4.094 11 N -0.238 5.238 12 C -0.009 4.009 13 C -0.156 4.156 14 C -0.138 4.138 15 C 0.022 3.978 16 C -0.542 4.542 17 H 0.072 0.928 18 C -0.181 4.181 19 N -0.559 5.559 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.217 1.217 23 H -0.196 1.196 24 C -0.140 4.140 25 C -0.123 4.123 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.079 0.921 42 H 0.006 0.994 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.268 -8.990 -11.219 19.563 hybrid contribution 0.545 1.322 0.569 1.539 sum -12.723 -7.669 -10.650 18.279 Atomic orbital electron populations 1.21812 0.90110 1.04357 1.03789 1.23272 0.97215 0.79349 1.02273 1.86496 1.23658 1.33627 1.83969 1.23781 0.80567 0.92492 0.71721 1.90629 1.61138 1.43667 1.45375 1.22240 0.89864 0.89218 1.02758 0.88567 1.22639 1.00380 0.97028 0.93821 1.22796 0.93578 0.97675 1.03122 1.22963 0.98185 0.91503 0.96774 1.63239 1.03833 1.45505 1.11246 1.21623 0.95970 0.95595 0.87732 1.21905 0.98014 0.97720 0.97994 1.21317 0.97412 1.00106 0.94990 1.18670 0.92861 0.92089 0.94200 1.21353 1.31012 0.91171 1.10638 0.92803 1.25589 0.95927 1.00432 0.96154 1.70016 1.41787 1.16992 1.27107 0.85840 0.79261 0.79210 0.79116 1.19772 1.21720 1.19570 1.21464 0.99166 0.97334 0.96003 1.21288 0.93640 1.00435 0.96917 0.91450 0.90898 0.88196 0.91326 0.92030 0.89944 0.87427 0.91115 0.88139 0.92121 0.90085 0.92537 0.91748 0.93674 0.96228 0.92097 0.99441 0.93406 0.93891 0.93327 0.92736 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 10.29 71.98 0.74 -1.05 16 2 C 0.05 1.04 6.19 71.98 0.45 1.48 16 3 O -0.36 -8.98 10.22 -51.43 -0.53 -9.51 16 4 C 0.47 14.12 7.30 71.23 0.52 14.64 16 5 O -0.52 -18.92 16.23 21.96 0.36 -18.57 16 6 C 0.07 1.94 2.72 44.64 0.12 2.06 16 7 H 0.10 2.74 5.90 -2.39 -0.01 2.72 16 8 C -0.10 -2.13 6.48 31.98 0.21 -1.92 16 9 C -0.13 -3.01 6.94 31.77 0.22 -2.79 16 10 C 0.03 0.96 5.60 86.65 0.48 1.45 16 11 N -0.51 -16.80 4.34 -839.96 -3.65 -20.45 16 12 C 0.10 3.69 2.17 44.92 0.10 3.78 16 13 C -0.12 -4.73 4.42 30.59 0.14 -4.60 16 14 C -0.10 -4.67 5.24 30.59 0.16 -4.51 16 15 C 0.04 2.00 2.59 -11.54 -0.03 1.97 16 16 C -0.50 -26.45 6.61 25.60 0.17 -26.28 16 17 H 0.05 2.80 6.71 -2.91 -0.02 2.78 16 18 C 0.02 0.91 5.30 84.65 0.45 1.35 16 19 N -0.92 -51.99 11.32 21.45 0.24 -51.75 16 20 Si 0.94 42.40 29.54 68.60 2.03 44.43 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 C -0.10 -4.31 5.41 30.59 0.17 -4.14 16 25 C -0.09 -3.32 4.93 30.59 0.15 -3.17 16 26 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16 30 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 31 H 0.08 1.67 8.05 -2.38 -0.02 1.65 16 32 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.10 1.80 8.14 -2.39 -0.02 1.79 16 35 H 0.06 2.11 4.76 -2.39 -0.01 2.10 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 2.22 8.13 -2.39 -0.02 2.20 16 38 H 0.06 2.81 5.14 -2.39 -0.01 2.80 16 39 H 0.04 1.66 6.28 -2.39 -0.01 1.64 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 41 H 0.06 3.24 6.07 -2.38 -0.01 3.22 16 42 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 43 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 47 H 0.06 2.52 5.29 -2.39 -0.01 2.51 16 Total: -1.00 -62.79 353.76 3.43 -59.36 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.94 Total: 18.21 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 4.04 Total: -21.73 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -3.40 Total: -72.20 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.17 Total: -28.07 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -62.79 3.43 -59.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.073 kcal (2) G-P(sol) polarization free energy of solvation -62.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds