Wall clock time and date at job start Tue Mar 31 2020 08:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45206 * 109.46838 * 2 1 4 4 C 1.34231 * 116.99897 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00058 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00124 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.47089 * 172.68712 * 6 4 3 8 8 C 1.46901 * 110.99511 * 153.65781 * 7 6 4 9 9 C 1.52999 * 117.50307 * 12.30596 * 8 7 6 10 10 C 1.52996 * 60.00046 * 252.51267 * 9 8 7 11 11 C 1.46900 * 110.99869 * 277.61009 * 7 6 4 12 12 C 1.52993 * 109.47080 * 301.16005 * 11 7 6 13 13 C 1.53000 * 109.47105 * 180.02562 * 12 11 7 14 14 C 1.52996 * 109.47374 * 300.00266 * 13 12 11 15 15 C 1.50700 * 109.47449 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99667 * 240.00018 * 15 14 13 17 17 C 1.37869 * 119.99994 * 59.99953 * 15 14 13 18 18 N 1.31516 * 120.00314 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00162 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47192 * 89.99782 * 19 17 15 21 21 H 1.48498 * 109.47476 * 209.99932 * 19 17 15 22 22 H 1.48499 * 109.46772 * 330.00299 * 19 17 15 23 23 C 1.53006 * 109.47285 * 59.99623 * 14 13 12 24 24 C 1.52993 * 109.47147 * 61.16462 * 11 7 6 25 25 H 1.09005 * 109.47413 * 299.99611 * 1 2 3 26 26 H 1.08989 * 109.47254 * 60.00601 * 1 2 3 27 27 H 1.09006 * 109.46695 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47468 * 239.99654 * 2 1 3 29 29 H 1.09006 * 109.47459 * 119.99506 * 2 1 3 30 30 H 1.09003 * 109.46708 * 52.68559 * 6 4 3 31 31 H 1.09001 * 109.46612 * 292.68859 * 6 4 3 32 32 H 1.09000 * 115.54956 * 158.01894 * 8 7 6 33 33 H 1.08995 * 117.49387 * 359.97438 * 9 8 7 34 34 H 1.08998 * 117.49624 * 145.02166 * 9 8 7 35 35 H 1.08998 * 117.50008 * 252.51154 * 10 9 8 36 36 H 1.09002 * 117.50193 * 107.49154 * 10 9 8 37 37 H 1.08998 * 109.46773 * 181.16253 * 11 7 6 38 38 H 1.08997 * 109.47534 * 300.00255 * 12 11 7 39 39 H 1.08998 * 109.47115 * 60.00458 * 12 11 7 40 40 H 1.09003 * 109.47458 * 180.02562 * 13 12 11 41 41 H 1.08998 * 109.46854 * 60.00182 * 13 12 11 42 42 H 1.08998 * 109.47062 * 299.99789 * 14 13 12 43 43 H 0.96999 * 120.00356 * 180.02562 * 18 17 15 44 44 H 1.08997 * 109.47597 * 180.02562 * 23 14 13 45 45 H 1.08998 * 109.46936 * 60.00088 * 23 14 13 46 46 H 1.08998 * 109.47113 * 299.99582 * 24 11 7 47 47 H 1.08997 * 109.47323 * 59.99980 * 24 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9376 -0.0012 7 7 5.3773 2.8650 0.1746 8 6 6.0379 4.0354 -0.4186 9 6 5.1529 5.2145 -0.8277 10 6 5.7773 4.3187 -1.8993 11 6 5.7299 2.7244 1.5937 12 6 5.1763 3.9161 2.3773 13 6 5.5441 3.7700 3.8552 14 6 4.9431 2.4747 4.4047 15 6 5.3059 2.3304 5.8603 16 1 5.8742 1.4744 6.1928 17 6 4.9123 3.2912 6.7673 18 7 4.2198 4.3334 6.3625 19 14 5.3626 3.1128 8.5715 20 1 6.6717 3.7676 8.8220 21 1 4.3187 3.7570 9.4084 22 1 5.4556 1.6718 8.9182 23 6 5.4968 1.2829 3.6211 24 6 5.1285 1.4292 2.1427 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.4841 3.5116 0.8162 31 1 3.6928 3.4245 -0.9494 32 1 7.0308 4.2619 -0.0300 33 1 4.0804 5.1216 -0.6570 34 1 5.5634 6.2171 -0.7080 35 1 6.5986 4.7320 -2.4848 36 1 5.1156 3.6367 -2.4334 37 1 6.8145 2.6938 1.6972 38 1 5.6047 4.8389 1.9862 39 1 4.0916 3.9467 2.2738 40 1 5.1493 4.6188 4.4136 41 1 6.6287 3.7396 3.9584 42 1 3.8585 2.5051 4.3016 43 1 3.9432 5.0096 7.0006 44 1 5.0683 0.3601 4.0122 45 1 6.5814 1.2525 3.7242 46 1 4.0439 1.4598 2.0392 47 1 5.5230 0.5802 1.5845 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173339347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:51 Heat of formation + Delta-G solvation = -57.005906 kcal Electronic energy + Delta-G solvation = -25608.341042 eV Core-core repulsion = 22178.090162 eV Total energy + Delta-G solvation = -3430.250879 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.72436 -39.13394 -36.92337 -36.30987 -33.73947 -32.08290 -31.66744 -29.73619 -28.97186 -27.32552 -24.30647 -23.36405 -22.50497 -21.66812 -21.33491 -20.95898 -19.31136 -18.72160 -17.73913 -16.90907 -16.27624 -16.26683 -15.64217 -15.35760 -14.54991 -14.44375 -13.87487 -13.63748 -13.27748 -13.19009 -12.83729 -12.82884 -12.40620 -12.19022 -12.05309 -11.92889 -11.63183 -11.56687 -11.49459 -11.27386 -10.99521 -10.92386 -10.75285 -10.56279 -10.43868 -10.32136 -10.20269 -10.03575 -9.98076 -9.84377 -9.30006 -8.87243 -8.64114 -8.30047 -7.86899 -5.95002 -4.00842 2.47346 2.66642 3.31763 3.38540 3.42225 3.71047 4.15019 4.46578 4.73414 4.85477 4.89171 4.92414 4.98764 5.00671 5.06150 5.24106 5.32012 5.36146 5.46491 5.60294 5.64987 5.67089 5.72641 5.78192 5.89113 5.90727 5.96974 6.06157 6.15800 6.25818 6.42730 6.44269 6.55234 6.66879 6.74746 6.87839 6.96482 7.08802 7.16914 7.22920 7.38376 7.54644 7.78283 8.05413 8.06362 8.18639 8.51607 9.03398 9.63672 11.10390 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.004939 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.309365 B = 5667.368565 C = 6967.941624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.366 6.366 4 C 0.461 3.539 5 O -0.481 6.481 6 C 0.047 3.953 7 N -0.490 5.490 8 C 0.037 3.963 9 C -0.222 4.222 10 C -0.178 4.178 11 C 0.089 3.911 12 C -0.146 4.146 13 C -0.104 4.104 14 C 0.049 3.951 15 C -0.510 4.510 16 H 0.053 0.947 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.109 4.109 24 C -0.102 4.102 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.034 0.966 42 H 0.021 0.979 43 H 0.258 0.742 44 H 0.046 0.954 45 H 0.048 0.952 46 H 0.041 0.959 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 -1.215 -16.121 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.283 6.283 4 C 0.302 3.698 5 O -0.366 6.366 6 C -0.082 4.082 7 N -0.211 5.211 8 C -0.072 4.072 9 C -0.261 4.261 10 C -0.216 4.216 11 C -0.018 4.018 12 C -0.185 4.185 13 C -0.142 4.142 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.148 4.148 24 C -0.140 4.140 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.128 0.872 32 H 0.142 0.858 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.837 -1.841 -16.289 16.636 hybrid contribution -0.082 0.582 1.410 1.527 sum -2.919 -1.260 -14.879 15.215 Atomic orbital electron populations 1.21798 0.92868 1.02767 1.03473 1.22957 0.95126 0.80454 1.02503 1.86478 1.24940 1.32230 1.84680 1.23485 0.80258 0.92942 0.73095 1.90659 1.59893 1.42747 1.43322 1.21795 0.90536 0.91003 1.04847 1.61690 1.04810 1.36891 1.17684 1.22556 0.98698 0.89782 0.96193 1.23635 1.00241 0.96851 1.05401 1.23117 1.03647 1.02711 0.92130 1.21932 1.00464 0.96217 0.83186 1.22288 1.00124 0.96495 0.99615 1.21542 0.98760 1.03253 0.90688 1.18657 0.95489 0.89533 0.93301 1.21250 1.34267 1.06813 0.92535 0.92824 1.24959 0.95083 0.95414 0.98525 1.69875 1.38159 1.10970 1.34110 0.86661 0.78059 0.78199 0.85471 1.20770 1.21328 1.19993 1.21672 1.00050 1.00150 0.92881 1.21836 0.98942 0.96242 0.96981 0.91305 0.91713 0.90427 0.91551 0.91118 0.88898 0.87201 0.85802 0.88372 0.88599 0.88443 0.88876 0.89822 0.93423 0.92869 0.89060 0.94758 0.96065 0.93167 0.93500 0.93357 0.93985 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.16 0.38 -0.99 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.37 -5.27 10.22 -39.26 -0.40 -5.67 16 4 C 0.46 7.26 5.86 36.01 0.21 7.47 16 5 O -0.48 -8.68 13.11 -18.75 -0.25 -8.92 16 6 C 0.05 0.66 3.97 -4.97 -0.02 0.64 16 7 N -0.49 -7.36 4.30 -220.15 -0.95 -8.31 16 8 C 0.04 0.46 4.97 -67.71 -0.34 0.13 16 9 C -0.22 -2.39 9.50 -26.73 -0.25 -2.64 16 10 C -0.18 -1.84 9.88 -26.73 -0.26 -2.11 16 11 C 0.09 1.54 2.20 -67.72 -0.15 1.39 16 12 C -0.15 -2.73 4.68 -26.73 -0.13 -2.85 16 13 C -0.10 -2.40 4.98 -26.73 -0.13 -2.53 16 14 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 15 C -0.51 -14.11 8.56 -34.44 -0.29 -14.41 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -25.39 11.32 55.43 0.63 -24.77 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.11 -2.38 5.14 -26.70 -0.14 -2.51 16 24 C -0.10 -1.97 3.65 -26.71 -0.10 -2.07 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.53 8.14 -51.94 -0.42 0.11 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 29 H 0.07 0.91 8.13 -51.93 -0.42 0.48 16 30 H 0.09 1.38 5.42 -51.93 -0.28 1.10 16 31 H 0.11 1.29 5.15 -51.93 -0.27 1.02 16 32 H 0.12 1.51 8.04 -51.93 -0.42 1.09 16 33 H 0.10 1.05 6.06 -51.93 -0.31 0.73 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.98 7.47 -51.93 -0.39 0.59 16 37 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 38 H 0.05 0.81 7.30 -51.93 -0.38 0.43 16 39 H 0.05 1.02 5.98 -51.93 -0.31 0.71 16 40 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.04 0.84 5.49 -51.93 -0.29 0.55 16 47 H 0.07 1.38 6.85 -51.93 -0.36 1.02 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -29.84 354.62 -9.85 -39.69 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.93 Total: 3.14 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -1.28 Total: -16.87 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: -0.32 Total: -33.08 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.65 Total: -14.59 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.84 -9.85 -39.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.320 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds