Wall clock time and date at job start Tue Mar 31 2020 08:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45206 * 109.46838 * 2 1 4 4 C 1.34231 * 116.99897 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00058 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00124 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.47089 * 172.68712 * 6 4 3 8 8 C 1.46901 * 110.99511 * 153.65781 * 7 6 4 9 9 C 1.52999 * 117.50307 * 12.30596 * 8 7 6 10 10 C 1.52996 * 60.00046 * 252.51267 * 9 8 7 11 11 C 1.46900 * 110.99869 * 277.61009 * 7 6 4 12 12 C 1.52993 * 109.47080 * 301.16005 * 11 7 6 13 13 C 1.53000 * 109.47105 * 180.02562 * 12 11 7 14 14 C 1.52996 * 109.47374 * 300.00266 * 13 12 11 15 15 C 1.50700 * 109.47449 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99667 * 240.00018 * 15 14 13 17 17 C 1.37869 * 119.99994 * 59.99953 * 15 14 13 18 18 N 1.31516 * 120.00314 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00162 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47192 * 89.99782 * 19 17 15 21 21 H 1.48498 * 109.47476 * 209.99932 * 19 17 15 22 22 H 1.48499 * 109.46772 * 330.00299 * 19 17 15 23 23 C 1.53006 * 109.47285 * 59.99623 * 14 13 12 24 24 C 1.52993 * 109.47147 * 61.16462 * 11 7 6 25 25 H 1.09005 * 109.47413 * 299.99611 * 1 2 3 26 26 H 1.08989 * 109.47254 * 60.00601 * 1 2 3 27 27 H 1.09006 * 109.46695 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47468 * 239.99654 * 2 1 3 29 29 H 1.09006 * 109.47459 * 119.99506 * 2 1 3 30 30 H 1.09003 * 109.46708 * 52.68559 * 6 4 3 31 31 H 1.09001 * 109.46612 * 292.68859 * 6 4 3 32 32 H 1.09000 * 115.54956 * 158.01894 * 8 7 6 33 33 H 1.08995 * 117.49387 * 359.97438 * 9 8 7 34 34 H 1.08998 * 117.49624 * 145.02166 * 9 8 7 35 35 H 1.08998 * 117.50008 * 252.51154 * 10 9 8 36 36 H 1.09002 * 117.50193 * 107.49154 * 10 9 8 37 37 H 1.08998 * 109.46773 * 181.16253 * 11 7 6 38 38 H 1.08997 * 109.47534 * 300.00255 * 12 11 7 39 39 H 1.08998 * 109.47115 * 60.00458 * 12 11 7 40 40 H 1.09003 * 109.47458 * 180.02562 * 13 12 11 41 41 H 1.08998 * 109.46854 * 60.00182 * 13 12 11 42 42 H 1.08998 * 109.47062 * 299.99789 * 14 13 12 43 43 H 0.96999 * 120.00356 * 180.02562 * 18 17 15 44 44 H 1.08997 * 109.47597 * 180.02562 * 23 14 13 45 45 H 1.08998 * 109.46936 * 60.00088 * 23 14 13 46 46 H 1.08998 * 109.47113 * 299.99582 * 24 11 7 47 47 H 1.08997 * 109.47323 * 59.99980 * 24 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9376 -0.0012 7 7 5.3773 2.8650 0.1746 8 6 6.0379 4.0354 -0.4186 9 6 5.1529 5.2145 -0.8277 10 6 5.7773 4.3187 -1.8993 11 6 5.7299 2.7244 1.5937 12 6 5.1763 3.9161 2.3773 13 6 5.5441 3.7700 3.8552 14 6 4.9431 2.4747 4.4047 15 6 5.3059 2.3304 5.8603 16 1 5.8742 1.4744 6.1928 17 6 4.9123 3.2912 6.7673 18 7 4.2198 4.3334 6.3625 19 14 5.3626 3.1128 8.5715 20 1 6.6717 3.7676 8.8220 21 1 4.3187 3.7570 9.4084 22 1 5.4556 1.6718 8.9182 23 6 5.4968 1.2829 3.6211 24 6 5.1285 1.4292 2.1427 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.4841 3.5116 0.8162 31 1 3.6928 3.4245 -0.9494 32 1 7.0308 4.2619 -0.0300 33 1 4.0804 5.1216 -0.6570 34 1 5.5634 6.2171 -0.7080 35 1 6.5986 4.7320 -2.4848 36 1 5.1156 3.6367 -2.4334 37 1 6.8145 2.6938 1.6972 38 1 5.6047 4.8389 1.9862 39 1 4.0916 3.9467 2.2738 40 1 5.1493 4.6188 4.4136 41 1 6.6287 3.7396 3.9584 42 1 3.8585 2.5051 4.3016 43 1 3.9432 5.0096 7.0006 44 1 5.0683 0.3601 4.0122 45 1 6.5814 1.2525 3.7242 46 1 4.0439 1.4598 2.0392 47 1 5.5230 0.5802 1.5845 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173339347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:50 Heat of formation + Delta-G solvation = -72.889988 kcal Electronic energy + Delta-G solvation = -25609.029827 eV Core-core repulsion = 22178.090162 eV Total energy + Delta-G solvation = -3430.939665 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.95261 -40.34869 -38.35467 -37.52784 -35.31503 -33.73490 -32.66813 -31.42054 -30.52929 -28.71731 -26.20063 -24.30794 -23.63052 -23.00750 -22.53954 -22.42317 -20.74804 -20.19022 -18.90581 -18.43223 -18.03980 -17.41001 -16.82837 -16.70593 -16.32734 -15.48164 -15.25730 -15.01684 -14.80345 -14.63817 -14.35149 -13.92526 -13.75404 -13.59551 -13.29194 -13.08370 -13.04152 -12.86686 -12.76875 -12.53725 -12.49903 -12.32054 -12.28910 -12.24095 -12.03085 -11.74868 -11.59041 -11.44303 -11.29726 -11.22292 -11.10621 -10.70708 -10.54419 -10.37529 -9.07739 -8.07260 -6.21528 1.25490 1.40045 1.40871 1.50934 1.59170 2.43227 2.69066 3.16220 3.18606 3.65088 3.86755 3.90838 3.94189 4.01291 4.06710 4.10659 4.16535 4.18309 4.26877 4.35206 4.37617 4.49707 4.64453 4.72100 4.77353 4.82409 4.84510 4.92296 4.93634 4.96194 5.04500 5.10649 5.12754 5.19123 5.28114 5.31999 5.36297 5.40865 5.53210 5.58530 5.66618 5.91511 6.01801 6.09704 6.20189 6.41838 6.86358 6.89874 7.46293 8.96201 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.004939 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.309365 B = 5667.368565 C = 6967.941624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 O -0.370 6.370 4 C 0.458 3.542 5 O -0.509 6.509 6 C 0.048 3.952 7 N -0.493 5.493 8 C 0.010 3.990 9 C -0.215 4.215 10 C -0.160 4.160 11 C 0.100 3.900 12 C -0.131 4.131 13 C -0.096 4.096 14 C 0.049 3.951 15 C -0.536 4.536 16 H 0.048 0.952 17 C 0.015 3.985 18 N -0.915 5.915 19 Si 0.950 3.050 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.102 4.102 24 C -0.088 4.088 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.138 0.862 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.060 0.940 41 H 0.030 0.970 42 H -0.014 1.014 43 H 0.260 0.740 44 H 0.037 0.963 45 H 0.051 0.949 46 H 0.032 0.968 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.935 -0.658 -17.514 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.287 6.287 4 C 0.301 3.699 5 O -0.397 6.397 6 C -0.080 4.080 7 N -0.214 5.214 8 C -0.099 4.099 9 C -0.254 4.254 10 C -0.198 4.198 11 C -0.008 4.008 12 C -0.170 4.170 13 C -0.134 4.134 14 C 0.030 3.970 15 C -0.574 4.574 16 H 0.066 0.934 17 C -0.183 4.183 18 N -0.554 5.554 19 Si 0.776 3.224 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.196 1.196 23 C -0.140 4.140 24 C -0.126 4.126 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.156 0.844 32 H 0.145 0.855 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.004 0.996 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.050 0.950 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.655 -1.278 -17.699 17.943 hybrid contribution -0.193 0.388 1.826 1.876 sum -2.848 -0.890 -15.873 16.151 Atomic orbital electron populations 1.21817 0.90412 1.04356 1.03624 1.23227 0.97077 0.79353 1.02201 1.86483 1.24301 1.33679 1.84237 1.23863 0.80518 0.93298 0.72213 1.90639 1.60537 1.43683 1.44825 1.21884 0.89990 0.90174 1.05993 1.61651 1.05421 1.38840 1.15516 1.22702 0.99131 0.89954 0.98096 1.23683 1.00011 0.96821 1.04882 1.23183 1.03849 1.01830 0.90905 1.21679 1.00167 0.94171 0.84779 1.22106 0.99913 0.98276 0.96690 1.21319 0.97973 1.00792 0.93345 1.18598 0.93474 0.91883 0.93020 1.21597 1.34656 1.06873 0.94291 0.93407 1.25692 0.94958 0.95069 1.02620 1.70008 1.38634 1.11426 1.35379 0.85675 0.78008 0.78239 0.80450 1.19976 1.20825 1.19647 1.21550 0.99864 0.98334 0.94301 1.21655 0.98368 0.97525 0.95030 0.92028 0.90614 0.88127 0.90756 0.92579 0.89558 0.84406 0.85481 0.88308 0.87457 0.86549 0.88817 0.89632 0.91310 0.93497 0.92177 0.95144 0.99567 0.93073 0.94401 0.93039 0.94962 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 10.29 71.98 0.74 -1.69 16 2 C 0.05 1.30 6.19 71.98 0.45 1.74 16 3 O -0.37 -10.51 10.22 -51.43 -0.53 -11.04 16 4 C 0.46 14.24 5.86 71.24 0.42 14.66 16 5 O -0.51 -18.32 13.11 21.97 0.29 -18.03 16 6 C 0.05 1.29 3.97 85.56 0.34 1.63 16 7 N -0.49 -14.11 4.30 -850.43 -3.66 -17.77 16 8 C 0.01 0.22 4.97 44.91 0.22 0.44 16 9 C -0.22 -3.96 9.50 30.59 0.29 -3.67 16 10 C -0.16 -2.78 9.88 30.59 0.30 -2.47 16 11 C 0.10 3.40 2.20 44.91 0.10 3.50 16 12 C -0.13 -4.84 4.68 30.59 0.14 -4.70 16 13 C -0.10 -4.50 4.98 30.59 0.15 -4.35 16 14 C 0.05 2.51 2.10 -11.54 -0.02 2.49 16 15 C -0.54 -30.38 8.56 25.60 0.22 -30.16 16 16 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 17 C 0.02 0.85 5.30 84.65 0.45 1.30 16 18 N -0.91 -53.12 11.32 21.44 0.24 -52.87 16 19 Si 0.95 44.22 29.54 68.60 2.03 46.24 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 C -0.10 -4.56 5.14 30.61 0.16 -4.40 16 24 C -0.09 -3.43 3.65 30.61 0.11 -3.32 16 25 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 29 H 0.06 1.47 8.13 -2.38 -0.02 1.45 16 30 H 0.09 2.49 5.42 -2.39 -0.01 2.47 16 31 H 0.14 2.90 5.15 -2.39 -0.01 2.89 16 32 H 0.13 2.79 8.04 -2.39 -0.02 2.77 16 33 H 0.10 1.82 6.06 -2.39 -0.01 1.81 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.65 7.47 -2.39 -0.02 1.63 16 37 H 0.09 2.91 8.09 -2.39 -0.02 2.89 16 38 H 0.07 2.25 7.30 -2.39 -0.02 2.23 16 39 H 0.05 1.80 5.98 -2.39 -0.01 1.78 16 40 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 41 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 42 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.03 1.31 5.49 -2.39 -0.01 1.29 16 47 H 0.07 2.69 6.85 -2.39 -0.02 2.67 16 Total: -1.00 -65.22 354.62 3.38 -61.84 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.94 Total: 20.64 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 4.07 Total: -29.00 kcal Atomic # 7 Polarization: -67.23 SS G_CDS: -3.42 Total: -70.65 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.24 Total: -29.07 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -65.22 3.38 -61.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.052 kcal (2) G-P(sol) polarization free energy of solvation -65.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds