Wall clock time and date at job start Tue Mar 31 2020 07:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 117.00137 * 2 1 4 4 O 1.20824 * 119.99710 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00038 * 180.02562 * 3 2 1 6 6 H 1.09001 * 110.64694 * 300.69869 * 5 3 2 7 7 C 1.54940 * 110.72465 * 63.84994 * 5 3 2 8 8 N 1.49005 * 103.00342 * 155.84530 * 7 5 3 9 9 C 1.46897 * 110.96843 * 200.30048 * 8 7 5 10 10 C 1.52998 * 109.47208 * 300.94550 * 9 8 7 11 11 C 1.53005 * 109.47388 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46590 * 60.00291 * 11 10 9 13 13 C 1.50704 * 109.47280 * 59.99945 * 12 11 10 14 14 H 1.07993 * 120.00050 * 239.99527 * 13 12 11 15 15 C 1.37882 * 119.99556 * 60.00036 * 13 12 11 16 16 N 1.31510 * 120.00558 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99566 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47161 * 89.99738 * 17 15 13 19 19 H 1.48496 * 109.47051 * 209.99546 * 17 15 13 20 20 H 1.48498 * 109.47094 * 329.99545 * 17 15 13 21 21 C 1.52998 * 109.47390 * 299.99899 * 12 11 10 22 22 C 1.52999 * 109.47031 * 59.99836 * 21 12 11 23 23 C 1.47898 * 105.87245 * 320.82491 * 8 7 5 24 24 C 1.53993 * 107.05786 * 25.33653 * 23 8 7 25 25 H 1.08998 * 110.31419 * 239.85830 * 24 23 8 26 26 C 1.53010 * 110.39363 * 117.73072 * 24 23 8 27 27 H 1.09009 * 109.47005 * 300.00163 * 1 2 3 28 28 H 1.08999 * 109.47349 * 60.00160 * 1 2 3 29 29 H 1.08996 * 109.47150 * 180.02562 * 1 2 3 30 30 H 1.09001 * 110.66908 * 274.38624 * 7 5 3 31 31 H 1.09002 * 110.66719 * 37.51764 * 7 5 3 32 32 H 1.09000 * 109.47682 * 60.95071 * 9 8 7 33 33 H 1.08994 * 109.47632 * 299.99990 * 10 9 8 34 34 H 1.09003 * 109.47178 * 60.00143 * 10 9 8 35 35 H 1.08995 * 109.47248 * 300.00229 * 11 10 9 36 36 H 1.09002 * 109.46860 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.46833 * 179.97438 * 12 11 10 38 38 H 0.96993 * 120.00244 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.46992 * 300.00158 * 21 12 11 40 40 H 1.09000 * 109.47095 * 180.02562 * 21 12 11 41 41 H 1.08998 * 109.47118 * 180.02562 * 22 21 12 42 42 H 1.09004 * 109.46969 * 60.00309 * 22 21 12 43 43 H 1.09003 * 109.92213 * 265.98690 * 23 8 7 44 44 H 1.09000 * 109.92016 * 144.68886 * 23 8 7 45 45 H 1.08996 * 109.47028 * 304.23714 * 26 24 23 46 46 H 1.09000 * 109.46520 * 64.23539 * 26 24 23 47 47 H 1.08996 * 109.46898 * 184.23386 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9777 0.7748 0.8762 7 6 4.1468 0.6660 -1.3017 8 7 5.4710 1.3379 -1.4246 9 6 5.9680 1.2716 -2.8054 10 6 6.0973 -0.1922 -3.2312 11 6 6.6143 -0.2613 -4.6696 12 6 7.9834 0.4166 -4.7523 13 6 8.9499 -0.2894 -3.8366 14 1 9.4245 0.2518 -3.0315 15 6 9.2282 -1.6264 -4.0267 16 7 8.6500 -2.2856 -5.0068 17 14 10.4256 -2.5018 -2.8912 18 1 9.6856 -3.0749 -1.7383 19 1 11.1054 -3.5927 -3.6347 20 1 11.4377 -1.5336 -2.3978 21 6 7.8543 1.8805 -4.3266 22 6 7.3371 1.9496 -2.8883 23 6 5.2537 2.7398 -1.0064 24 6 4.0370 2.7461 -0.0624 25 1 3.2474 3.3792 -0.4671 26 6 4.4450 3.2321 1.3299 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 4.2666 -0.4128 -1.2016 31 1 3.5126 0.9062 -2.1551 32 1 5.2694 1.7824 -3.4680 33 1 6.7959 -0.7031 -2.5687 34 1 5.1218 -0.6752 -3.1726 35 1 5.9153 0.2493 -5.3318 36 1 6.7068 -1.3043 -4.9726 37 1 8.3520 0.3670 -5.7769 38 1 8.8455 -3.2262 -5.1403 39 1 7.1553 2.3912 -4.9890 40 1 8.8296 2.3636 -4.3860 41 1 7.2447 2.9925 -2.5852 42 1 8.0361 1.4389 -2.2260 43 1 5.0497 3.3604 -1.8790 44 1 6.1334 3.1112 -0.4808 45 1 5.2596 2.6134 1.7064 46 1 4.7741 4.2695 1.2706 47 1 3.5919 3.1595 2.0044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173340764.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:53 Heat of formation + Delta-G solvation = -100.539365 kcal Electronic energy + Delta-G solvation = -25297.677780 eV Core-core repulsion = 21865.539149 eV Total energy + Delta-G solvation = -3432.138632 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.90701 -39.20420 -37.21584 -36.40940 -33.39186 -31.78551 -30.69060 -29.60252 -28.38792 -27.47675 -25.69047 -24.65768 -23.01312 -21.55197 -21.29912 -20.16826 -19.44304 -18.67209 -17.80892 -16.96116 -16.55153 -15.83508 -15.29006 -15.00791 -14.59870 -14.17369 -13.95337 -13.57883 -13.43470 -13.33341 -13.04189 -12.91042 -12.79203 -12.40604 -12.19865 -12.07972 -11.48694 -11.45030 -11.14049 -11.01235 -10.98578 -10.89662 -10.86583 -10.71855 -10.69149 -10.52003 -10.48894 -10.27060 -10.04331 -9.55550 -9.13606 -8.79883 -8.56653 -8.23473 -8.09244 -5.90453 -3.94141 2.02662 2.52963 3.35784 3.42648 3.45819 4.18501 4.32458 4.50891 4.52063 4.74170 4.88273 4.94999 4.97189 5.17620 5.26951 5.31088 5.40305 5.46200 5.54849 5.62365 5.66839 5.76892 5.82450 5.97644 5.99746 6.03236 6.06395 6.19629 6.24178 6.29479 6.46100 6.52946 6.58292 6.72210 6.77404 6.86294 7.09574 7.18821 7.26627 7.38244 7.56661 7.57627 7.68234 7.80981 7.99165 8.21478 8.55320 9.08018 9.68959 11.15599 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.004039 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.255419 B = 6931.246973 C = 7324.366765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.472 3.528 4 O -0.509 6.509 5 C -0.087 4.087 6 H 0.122 0.878 7 C 0.053 3.947 8 N -0.506 5.506 9 C 0.086 3.914 10 C -0.092 4.092 11 C -0.107 4.107 12 C 0.044 3.956 13 C -0.497 4.497 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.884 3.116 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.106 4.106 22 C -0.095 4.095 23 C 0.041 3.959 24 C -0.092 4.092 25 H 0.090 0.910 26 C -0.140 4.140 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.027 0.973 33 H 0.081 0.919 34 H 0.030 0.970 35 H 0.010 0.990 36 H 0.093 0.907 37 H 0.023 0.977 38 H 0.258 0.742 39 H 0.030 0.970 40 H 0.047 0.953 41 H 0.034 0.966 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.041 6.691 10.048 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.315 3.685 4 O -0.397 6.397 5 C -0.106 4.106 6 H 0.140 0.860 7 C -0.075 4.075 8 N -0.230 5.230 9 C -0.022 4.022 10 C -0.130 4.130 11 C -0.146 4.146 12 C 0.025 3.975 13 C -0.535 4.535 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.533 5.533 17 Si 0.712 3.288 18 H -0.207 1.207 19 H -0.215 1.215 20 H -0.201 1.201 21 C -0.145 4.145 22 C -0.133 4.133 23 C -0.088 4.088 24 C -0.110 4.110 25 H 0.108 0.892 26 C -0.197 4.197 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.029 0.971 36 H 0.111 0.889 37 H 0.041 0.959 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.869 6.556 10.281 17.728 hybrid contribution -0.291 -0.128 0.063 0.325 sum -13.160 6.428 10.345 17.931 Atomic orbital electron populations 1.23271 0.76504 1.03747 1.02412 1.86554 1.23292 1.33373 1.83872 1.23698 0.91948 0.81234 0.71641 1.90636 1.67098 1.36406 1.45518 1.22147 0.86304 0.99445 1.02723 0.86027 1.23181 0.90276 1.00646 0.93384 1.65011 1.22312 1.10958 1.24747 1.21919 0.96017 0.98809 0.85451 1.21439 0.99097 0.92822 0.99615 1.21523 0.96359 1.03937 0.92748 1.18690 0.93117 0.89023 0.96640 1.21146 1.24052 0.94491 1.13852 0.92623 1.24920 0.96079 0.97643 0.95274 1.69863 1.43379 1.09310 1.30709 0.86720 0.81582 0.79462 0.81007 1.20743 1.21522 1.20056 1.21556 0.98379 0.99973 0.94544 1.21431 0.95771 0.97314 0.98804 1.22974 0.97178 0.91065 0.97535 1.22038 0.98087 0.93544 0.97377 0.89193 1.21813 1.01312 1.01423 0.95171 0.92015 0.91925 0.88020 0.88447 0.93612 0.95488 0.90085 0.95109 0.97082 0.88910 0.95882 0.93245 0.95122 0.93378 0.94709 0.90222 0.93663 0.89794 0.91814 0.92155 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.16 10.57 -39.27 -0.41 -4.58 16 3 C 0.47 6.04 7.26 36.00 0.26 6.31 16 4 O -0.51 -7.49 15.21 -18.75 -0.29 -7.77 16 5 C -0.09 -1.05 3.09 -89.91 -0.28 -1.33 16 6 H 0.12 1.34 7.87 -51.93 -0.41 0.93 16 7 C 0.05 0.75 4.83 -1.63 -0.01 0.74 16 8 N -0.51 -7.93 5.11 -222.09 -1.14 -9.06 16 9 C 0.09 1.54 1.64 -67.71 -0.11 1.43 16 10 C -0.09 -1.89 4.82 -26.73 -0.13 -2.02 16 11 C -0.11 -2.48 5.24 -26.73 -0.14 -2.62 16 12 C 0.04 1.06 2.59 -91.77 -0.24 0.82 16 13 C -0.50 -13.07 6.61 -34.44 -0.23 -13.30 16 14 H 0.06 1.46 6.71 -52.49 -0.35 1.11 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 17 Si 0.88 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 C -0.11 -2.18 5.41 -26.73 -0.14 -2.33 16 22 C -0.10 -1.79 4.94 -26.73 -0.13 -1.93 16 23 C 0.04 0.54 5.16 -2.76 -0.01 0.53 16 24 C -0.09 -1.09 2.97 -89.26 -0.26 -1.35 16 25 H 0.09 1.16 6.89 -51.93 -0.36 0.80 16 26 C -0.14 -1.40 8.89 37.16 0.33 -1.07 16 27 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.10 1.38 7.67 -51.93 -0.40 0.98 16 31 H 0.05 0.66 7.92 -51.93 -0.41 0.25 16 32 H 0.03 0.49 7.99 -51.93 -0.41 0.08 16 33 H 0.08 1.88 7.22 -51.93 -0.37 1.51 16 34 H 0.03 0.58 6.91 -51.93 -0.36 0.22 16 35 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.03 0.58 7.27 -51.93 -0.38 0.20 16 42 H 0.08 1.66 6.62 -51.93 -0.34 1.31 16 43 H 0.05 0.62 7.63 -51.93 -0.40 0.22 16 44 H 0.08 1.08 7.69 -51.93 -0.40 0.69 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -28.75 356.53 -9.25 -38.00 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -8.27 Total: -0.42 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -0.12 Total: -13.20 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: -0.51 Total: -33.48 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.70 Total: -12.35 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.75 -9.25 -38.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340764.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.543 kcal (2) G-P(sol) polarization free energy of solvation -28.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds