Wall clock time and date at job start Tue Mar 31 2020 07:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 117.00137 * 2 1 4 4 O 1.20824 * 119.99710 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00038 * 180.02562 * 3 2 1 6 6 H 1.09001 * 110.64694 * 300.69869 * 5 3 2 7 7 C 1.54940 * 110.72465 * 63.84994 * 5 3 2 8 8 N 1.49005 * 103.00342 * 155.84530 * 7 5 3 9 9 C 1.46897 * 110.96843 * 200.30048 * 8 7 5 10 10 C 1.52998 * 109.47208 * 300.94550 * 9 8 7 11 11 C 1.53005 * 109.47388 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46590 * 60.00291 * 11 10 9 13 13 C 1.50704 * 109.47280 * 59.99945 * 12 11 10 14 14 H 1.07993 * 120.00050 * 239.99527 * 13 12 11 15 15 C 1.37882 * 119.99556 * 60.00036 * 13 12 11 16 16 N 1.31510 * 120.00558 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99566 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47161 * 89.99738 * 17 15 13 19 19 H 1.48496 * 109.47051 * 209.99546 * 17 15 13 20 20 H 1.48498 * 109.47094 * 329.99545 * 17 15 13 21 21 C 1.52998 * 109.47390 * 299.99899 * 12 11 10 22 22 C 1.52999 * 109.47031 * 59.99836 * 21 12 11 23 23 C 1.47898 * 105.87245 * 320.82491 * 8 7 5 24 24 C 1.53993 * 107.05786 * 25.33653 * 23 8 7 25 25 H 1.08998 * 110.31419 * 239.85830 * 24 23 8 26 26 C 1.53010 * 110.39363 * 117.73072 * 24 23 8 27 27 H 1.09009 * 109.47005 * 300.00163 * 1 2 3 28 28 H 1.08999 * 109.47349 * 60.00160 * 1 2 3 29 29 H 1.08996 * 109.47150 * 180.02562 * 1 2 3 30 30 H 1.09001 * 110.66908 * 274.38624 * 7 5 3 31 31 H 1.09002 * 110.66719 * 37.51764 * 7 5 3 32 32 H 1.09000 * 109.47682 * 60.95071 * 9 8 7 33 33 H 1.08994 * 109.47632 * 299.99990 * 10 9 8 34 34 H 1.09003 * 109.47178 * 60.00143 * 10 9 8 35 35 H 1.08995 * 109.47248 * 300.00229 * 11 10 9 36 36 H 1.09002 * 109.46860 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.46833 * 179.97438 * 12 11 10 38 38 H 0.96993 * 120.00244 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.46992 * 300.00158 * 21 12 11 40 40 H 1.09000 * 109.47095 * 180.02562 * 21 12 11 41 41 H 1.08998 * 109.47118 * 180.02562 * 22 21 12 42 42 H 1.09004 * 109.46969 * 60.00309 * 22 21 12 43 43 H 1.09003 * 109.92213 * 265.98690 * 23 8 7 44 44 H 1.09000 * 109.92016 * 144.68886 * 23 8 7 45 45 H 1.08996 * 109.47028 * 304.23714 * 26 24 23 46 46 H 1.09000 * 109.46520 * 64.23539 * 26 24 23 47 47 H 1.08996 * 109.46898 * 184.23386 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9777 0.7748 0.8762 7 6 4.1468 0.6660 -1.3017 8 7 5.4710 1.3379 -1.4246 9 6 5.9680 1.2716 -2.8054 10 6 6.0973 -0.1922 -3.2312 11 6 6.6143 -0.2613 -4.6696 12 6 7.9834 0.4166 -4.7523 13 6 8.9499 -0.2894 -3.8366 14 1 9.4245 0.2518 -3.0315 15 6 9.2282 -1.6264 -4.0267 16 7 8.6500 -2.2856 -5.0068 17 14 10.4256 -2.5018 -2.8912 18 1 9.6856 -3.0749 -1.7383 19 1 11.1054 -3.5927 -3.6347 20 1 11.4377 -1.5336 -2.3978 21 6 7.8543 1.8805 -4.3266 22 6 7.3371 1.9496 -2.8883 23 6 5.2537 2.7398 -1.0064 24 6 4.0370 2.7461 -0.0624 25 1 3.2474 3.3792 -0.4671 26 6 4.4450 3.2321 1.3299 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 4.2666 -0.4128 -1.2016 31 1 3.5126 0.9062 -2.1551 32 1 5.2694 1.7824 -3.4680 33 1 6.7959 -0.7031 -2.5687 34 1 5.1218 -0.6752 -3.1726 35 1 5.9153 0.2493 -5.3318 36 1 6.7068 -1.3043 -4.9726 37 1 8.3520 0.3670 -5.7769 38 1 8.8455 -3.2262 -5.1403 39 1 7.1553 2.3912 -4.9890 40 1 8.8296 2.3636 -4.3860 41 1 7.2447 2.9925 -2.5852 42 1 8.0361 1.4389 -2.2260 43 1 5.0497 3.3604 -1.8790 44 1 6.1334 3.1112 -0.4808 45 1 5.2596 2.6134 1.7064 46 1 4.7741 4.2695 1.2706 47 1 3.5919 3.1595 2.0044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173340764.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:52 Heat of formation + Delta-G solvation = -116.118374 kcal Electronic energy + Delta-G solvation = -25298.353337 eV Core-core repulsion = 21865.539149 eV Total energy + Delta-G solvation = -3432.814188 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90427 -40.45575 -38.61101 -37.47951 -34.93673 -33.44036 -31.86245 -31.14785 -29.83577 -28.36367 -27.00682 -26.30371 -24.25275 -23.02099 -22.48678 -21.56595 -20.61292 -20.35762 -18.80924 -17.94384 -17.74486 -17.49882 -16.66871 -16.49747 -16.06902 -15.50801 -15.03518 -14.86227 -14.74990 -14.59215 -14.42068 -14.21934 -13.98392 -13.66587 -13.24532 -13.17154 -12.91823 -12.84846 -12.78510 -12.60393 -12.55916 -12.34798 -12.10085 -11.91273 -11.84934 -11.79421 -11.77296 -11.66511 -11.56271 -11.35879 -10.91690 -10.64561 -10.41319 -10.24980 -9.34121 -7.98000 -6.07219 1.04012 1.44741 1.46839 1.54841 1.66745 2.50719 3.00746 3.30744 3.33584 3.49283 3.80463 4.04447 4.09542 4.13108 4.19139 4.27104 4.29049 4.32526 4.47879 4.55956 4.58486 4.68425 4.71206 4.78935 4.80100 4.82981 4.86383 4.92716 4.99897 5.00827 5.06126 5.09353 5.17984 5.22774 5.30834 5.39400 5.44406 5.59980 5.67271 5.72225 5.78169 5.96189 6.01106 6.18483 6.27897 6.51372 6.62959 7.02054 7.58506 9.06974 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.004039 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.255419 B = 6931.246973 C = 7324.366765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.475 3.525 4 O -0.531 6.531 5 C -0.081 4.081 6 H 0.136 0.864 7 C 0.053 3.947 8 N -0.515 5.515 9 C 0.096 3.904 10 C -0.081 4.081 11 C -0.103 4.103 12 C 0.038 3.962 13 C -0.501 4.501 14 H 0.054 0.946 15 C 0.015 3.985 16 N -0.920 5.920 17 Si 0.940 3.060 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.270 1.270 21 C -0.102 4.102 22 C -0.088 4.088 23 C 0.041 3.959 24 C -0.085 4.085 25 H 0.081 0.919 26 C -0.135 4.135 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.130 0.870 30 H 0.094 0.906 31 H 0.041 0.959 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.022 0.978 36 H 0.059 0.941 37 H -0.013 1.013 38 H 0.256 0.744 39 H 0.046 0.954 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.754 7.643 11.840 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.420 6.420 5 C -0.100 4.100 6 H 0.154 0.846 7 C -0.075 4.075 8 N -0.239 5.239 9 C -0.012 4.012 10 C -0.119 4.119 11 C -0.141 4.141 12 C 0.020 3.980 13 C -0.539 4.539 14 H 0.072 0.928 15 C -0.183 4.183 16 N -0.561 5.561 17 Si 0.767 3.233 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.194 1.194 21 C -0.140 4.140 22 C -0.125 4.125 23 C -0.087 4.087 24 C -0.104 4.104 25 H 0.100 0.900 26 C -0.192 4.192 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.112 0.888 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.005 0.995 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.584 7.509 12.084 19.671 hybrid contribution -0.124 -0.443 -0.538 0.708 sum -13.708 7.066 11.547 19.266 Atomic orbital electron populations 1.23567 0.74735 1.05726 1.02587 1.86541 1.25093 1.32757 1.83434 1.23733 0.92086 0.81219 0.71038 1.90628 1.67589 1.37118 1.46666 1.22125 0.86089 0.99639 1.02155 0.84636 1.23156 0.89558 1.00478 0.94310 1.64939 1.23402 1.12738 1.22814 1.21667 0.95929 0.96524 0.87106 1.21244 0.98678 0.94859 0.97122 1.21376 0.96202 1.01796 0.94767 1.18688 0.93238 0.91753 0.94330 1.21388 1.24096 0.94692 1.13756 0.92828 1.25586 0.97645 0.98498 0.96544 1.70005 1.44626 1.09347 1.32151 0.85828 0.79789 0.78377 0.79317 1.20384 1.21593 1.19426 1.21462 0.99132 0.97224 0.96146 1.21325 0.95489 0.98855 0.96878 1.23036 0.98214 0.89509 0.97910 1.21976 0.97086 0.93206 0.98146 0.90027 1.21783 1.01534 1.02094 0.93836 0.91489 0.92140 0.85230 0.88809 0.94101 0.95048 0.92952 0.93850 0.95935 0.92261 0.99473 0.93487 0.93541 0.93301 0.91855 0.92288 0.93665 0.88942 0.91438 0.91072 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.60 16 2 O -0.36 -7.89 10.57 -51.46 -0.54 -8.43 16 3 C 0.48 11.39 7.26 71.24 0.52 11.91 16 4 O -0.53 -14.84 15.21 21.97 0.33 -14.50 16 5 C -0.08 -1.80 3.09 -10.33 -0.03 -1.83 16 6 H 0.14 2.65 7.87 -2.39 -0.02 2.63 16 7 C 0.05 1.40 4.83 86.56 0.42 1.82 16 8 N -0.51 -15.17 5.11 -856.56 -4.38 -19.55 16 9 C 0.10 3.31 1.64 44.92 0.07 3.39 16 10 C -0.08 -3.33 4.82 30.60 0.15 -3.18 16 11 C -0.10 -4.82 5.24 30.60 0.16 -4.66 16 12 C 0.04 1.89 2.59 -11.54 -0.03 1.86 16 13 C -0.50 -26.69 6.61 25.60 0.17 -26.52 16 14 H 0.05 2.83 6.71 -2.91 -0.02 2.81 16 15 C 0.01 0.81 5.30 84.66 0.45 1.26 16 16 N -0.92 -53.00 11.32 21.45 0.24 -52.75 16 17 Si 0.94 43.64 29.54 68.60 2.03 45.67 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 C -0.10 -4.08 5.41 30.59 0.17 -3.91 16 22 C -0.09 -3.15 4.94 30.59 0.15 -3.00 16 23 C 0.04 0.99 5.16 86.45 0.45 1.44 16 24 C -0.09 -1.83 2.97 -9.91 -0.03 -1.86 16 25 H 0.08 1.93 6.89 -2.39 -0.02 1.92 16 26 C -0.14 -2.33 8.89 71.99 0.64 -1.69 16 27 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 29 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 2.54 7.67 -2.39 -0.02 2.52 16 31 H 0.04 1.13 7.92 -2.39 -0.02 1.11 16 32 H 0.03 1.08 7.99 -2.39 -0.02 1.06 16 33 H 0.05 2.45 7.22 -2.39 -0.02 2.43 16 34 H 0.04 1.63 6.91 -2.39 -0.02 1.61 16 35 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 37 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 38 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.06 1.93 7.27 -2.39 -0.02 1.91 16 42 H 0.06 2.38 6.62 -2.39 -0.02 2.37 16 43 H 0.04 1.11 7.63 -2.39 -0.02 1.09 16 44 H 0.09 2.10 7.69 -2.39 -0.02 2.08 16 45 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -62.04 356.53 3.05 -58.99 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.93 Total: 13.95 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 4.44 Total: -23.37 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -4.14 Total: -72.30 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.21 Total: -22.93 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -62.04 3.05 -58.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340764.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.127 kcal (2) G-P(sol) polarization free energy of solvation -62.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds