Wall clock time and date at job start Tue Mar 31 2020 07:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47065 * 2 1 4 4 C 1.34225 * 117.00150 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00207 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00091 * 179.97438 * 4 3 2 7 7 H 1.08997 * 115.55602 * 31.89886 * 6 4 3 8 8 C 1.53041 * 117.50443 * 177.59787 * 6 4 3 9 9 C 1.52802 * 59.96454 * 107.50476 * 8 6 4 10 10 C 1.53153 * 117.75316 * 107.63539 * 9 8 6 11 11 C 1.53184 * 108.88497 * 199.61671 * 10 9 8 12 12 C 1.52934 * 109.45103 * 303.43213 * 11 10 9 13 13 N 1.46896 * 109.41425 * 183.09196 * 12 11 10 14 14 C 1.46902 * 111.00202 * 84.64078 * 13 12 11 15 15 H 1.09000 * 109.47211 * 325.00690 * 14 13 12 16 16 C 1.53001 * 109.47087 * 85.00259 * 14 13 12 17 17 C 1.50699 * 109.47532 * 205.00517 * 14 13 12 18 18 H 1.07997 * 119.99929 * 359.97438 * 17 14 13 19 19 C 1.37875 * 119.99999 * 180.02562 * 17 14 13 20 20 N 1.31519 * 120.00092 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99838 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47138 * 59.99605 * 21 19 17 23 23 H 1.48501 * 109.46855 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47399 * 299.99579 * 21 19 17 25 25 C 1.52949 * 109.82199 * 62.98505 * 12 11 10 26 26 C 1.53154 * 117.74919 * 252.36919 * 9 8 6 27 27 H 1.09001 * 109.47444 * 299.99994 * 1 2 3 28 28 H 1.09000 * 109.47189 * 60.00561 * 1 2 3 29 29 H 1.08999 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47520 * 239.99512 * 2 1 3 31 31 H 1.09010 * 109.47008 * 119.99462 * 2 1 3 32 32 H 1.09003 * 117.50060 * 214.98411 * 8 6 4 33 33 H 1.08999 * 117.50317 * 0.02562 * 8 6 4 34 34 H 1.09001 * 109.56194 * 319.43316 * 10 9 8 35 35 H 1.08994 * 109.56716 * 79.79267 * 10 9 8 36 36 H 1.08999 * 109.46911 * 183.44349 * 11 10 9 37 37 H 1.08996 * 109.47964 * 63.42805 * 11 10 9 38 38 H 1.09001 * 109.35723 * 302.91546 * 12 11 10 39 39 H 1.00905 * 111.00080 * 320.69012 * 13 12 11 40 40 H 1.08995 * 109.47531 * 180.02562 * 16 14 13 41 41 H 1.09004 * 109.46983 * 300.00436 * 16 14 13 42 42 H 1.09005 * 109.47151 * 59.99894 * 16 14 13 43 43 H 0.97004 * 119.99434 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.47279 * 177.01882 * 25 12 11 45 45 H 1.09001 * 109.47294 * 57.00784 * 25 12 11 46 46 H 1.08998 * 109.57201 * 280.20316 * 26 9 8 47 47 H 1.09001 * 109.56965 * 40.43838 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.3287 3.6914 0.5189 8 6 5.4440 3.0723 0.0575 9 6 4.6974 3.3802 -1.2396 10 6 4.5822 4.8469 -1.6652 11 6 3.4289 4.9842 -2.6640 12 6 3.6666 4.0464 -3.8484 13 7 2.5992 4.2323 -4.8403 14 6 2.9041 5.3547 -5.7378 15 1 3.4251 6.1337 -5.1813 16 6 3.7929 4.8650 -6.8829 17 6 1.6215 5.9112 -6.3000 18 1 0.6745 5.4746 -6.0192 19 6 1.6570 6.9771 -7.1739 20 7 2.8103 7.5085 -7.5163 21 14 0.0671 7.6664 -7.8713 22 1 -0.7957 8.1419 -6.7602 23 1 0.3755 8.8010 -8.7784 24 1 -0.6423 6.6047 -8.6294 25 6 3.6670 2.5943 -3.3682 26 6 4.8279 2.3801 -2.3922 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.8541 3.9148 0.6145 33 1 6.0295 2.1537 0.0954 34 1 4.3833 5.4662 -0.7905 35 1 5.5126 5.1646 -2.1358 36 1 3.3772 6.0132 -3.0200 37 1 2.4911 4.7213 -2.1748 38 1 4.6293 4.2773 -4.3046 39 1 1.7056 4.3620 -4.3899 40 1 4.0195 5.6978 -7.5486 41 1 4.7206 4.4625 -6.4762 42 1 3.2720 4.0858 -7.4395 43 1 2.8352 8.2586 -8.1308 44 1 3.7838 1.9287 -4.2235 45 1 2.7245 2.3777 -2.8652 46 1 5.7739 2.5403 -2.9093 47 1 4.7942 1.3639 -1.9994 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173603173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:27 Heat of formation + Delta-G solvation = -84.650718 kcal Electronic energy + Delta-G solvation = -24821.179451 eV Core-core repulsion = 21389.729803 eV Total energy + Delta-G solvation = -3431.449648 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96742 -39.11843 -36.95013 -36.05472 -33.76994 -31.92379 -31.54439 -30.71837 -28.44693 -26.03532 -25.25250 -24.53701 -22.86862 -22.63485 -20.85098 -20.64367 -19.56670 -18.86292 -17.78164 -16.76153 -16.55413 -16.18951 -15.28631 -14.88624 -14.29610 -14.22513 -13.97655 -13.85076 -13.54758 -13.36692 -12.96099 -12.69924 -12.57432 -12.35162 -12.14665 -12.02348 -11.96369 -11.73410 -11.59207 -11.31735 -10.94125 -10.92291 -10.77748 -10.68370 -10.65118 -10.38361 -10.30760 -10.21565 -10.08633 -9.92724 -9.79763 -9.52240 -8.80704 -8.45127 -7.17778 -6.00825 -4.06909 2.01806 2.49826 3.31712 3.36221 3.39103 3.61484 4.41103 4.43901 4.50773 4.59461 4.73113 4.76751 4.83817 4.96375 5.05998 5.19820 5.29527 5.32141 5.42480 5.49808 5.52537 5.57472 5.59976 5.69265 5.74357 5.78940 5.83492 5.96557 6.09173 6.14726 6.17244 6.26465 6.35722 6.39295 6.48203 6.74097 6.75794 6.93652 7.18916 7.28135 7.56694 7.69587 7.80662 7.93761 8.30661 8.45397 8.72904 9.04827 9.59004 11.05390 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018222 B = 0.003663 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.226504 B = 7641.465727 C = 8468.764924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.352 6.352 4 C 0.499 3.501 5 O -0.512 6.512 6 C -0.169 4.169 7 H 0.131 0.869 8 C -0.142 4.142 9 C -0.073 4.073 10 C -0.079 4.079 11 C -0.146 4.146 12 C 0.091 3.909 13 N -0.685 5.685 14 C 0.212 3.788 15 H 0.002 0.998 16 C -0.124 4.124 17 C -0.517 4.517 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.895 3.105 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.102 4.102 26 C -0.095 4.095 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.330 0.670 40 H 0.079 0.921 41 H 0.003 0.997 42 H 0.030 0.970 43 H 0.261 0.739 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.799 -10.255 16.495 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.269 6.269 4 C 0.343 3.657 5 O -0.401 6.401 6 C -0.188 4.188 7 H 0.149 0.851 8 C -0.179 4.179 9 C -0.074 4.074 10 C -0.117 4.117 11 C -0.185 4.185 12 C -0.020 4.020 13 N -0.314 5.314 14 C 0.105 3.895 15 H 0.020 0.980 16 C -0.183 4.183 17 C -0.556 4.556 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.723 3.277 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.141 4.141 26 C -0.133 4.133 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.147 0.853 40 H 0.098 0.902 41 H 0.022 0.978 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.093 0.907 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.296 -10.892 15.906 19.414 hybrid contribution -1.089 1.026 0.292 1.524 sum 1.206 -9.867 16.198 19.005 Atomic orbital electron populations 1.21811 0.92521 1.02931 1.03771 1.23029 0.95492 0.80171 1.02463 1.86507 1.24303 1.32294 1.83767 1.22541 0.80467 0.91102 0.71541 1.90629 1.60547 1.42905 1.46006 1.21929 0.96092 0.93086 1.07707 0.85067 1.23212 0.90398 1.04063 1.00241 1.21713 0.99419 0.97488 0.88754 1.21194 1.00021 0.91249 0.99198 1.22296 0.97729 1.01494 0.96961 1.21463 0.96988 0.92835 0.90716 1.60800 1.03386 1.47687 1.19550 1.19083 0.95176 0.85733 0.89525 0.98036 1.21727 0.95817 1.00533 1.00199 1.21242 0.92514 1.14577 1.27275 0.92388 1.24908 0.96197 0.96560 0.96284 1.69892 1.24088 1.24219 1.34742 0.86612 0.83661 0.78476 0.78938 1.20373 1.21339 1.20233 1.21500 0.97011 0.97701 0.97842 1.21365 1.00125 0.97212 0.94607 0.91568 0.91077 0.90279 0.91114 0.91465 0.87429 0.87382 0.91858 0.90713 0.91200 0.92144 0.91199 0.85282 0.90206 0.97788 0.95100 0.92937 0.91324 0.92674 0.90749 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.63 6.19 37.16 0.23 0.86 16 3 O -0.35 -4.45 10.22 -39.24 -0.40 -4.85 16 4 C 0.50 6.60 6.73 36.01 0.24 6.84 16 5 O -0.51 -7.67 14.69 -18.75 -0.28 -7.94 16 6 C -0.17 -1.94 6.00 -91.83 -0.55 -2.49 16 7 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 8 C -0.14 -1.45 9.50 -26.81 -0.25 -1.71 16 9 C -0.07 -0.88 1.97 -154.53 -0.30 -1.18 16 10 C -0.08 -0.97 5.67 -26.56 -0.15 -1.12 16 11 C -0.15 -2.26 5.17 -26.67 -0.14 -2.39 16 12 C 0.09 1.59 2.19 -67.78 -0.15 1.44 16 13 N -0.68 -14.41 6.04 -101.02 -0.61 -15.02 16 14 C 0.21 5.31 2.40 -68.86 -0.17 5.14 16 15 H 0.00 0.05 7.07 -51.93 -0.37 -0.31 16 16 C -0.12 -3.11 9.17 37.16 0.34 -2.77 16 17 C -0.52 -14.11 8.59 -34.44 -0.30 -14.40 16 18 H 0.06 1.56 7.62 -52.49 -0.40 1.16 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -25.35 11.32 55.43 0.63 -24.73 16 21 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 C -0.10 -1.57 5.53 -26.67 -0.15 -1.72 16 26 C -0.10 -1.27 5.28 -26.56 -0.14 -1.41 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 31 H 0.07 0.63 8.13 -51.92 -0.42 0.21 16 32 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.11 1.17 7.67 -51.93 -0.40 0.77 16 34 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.23 7.36 -51.93 -0.38 0.85 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.32 7.11 -51.93 -0.37 0.95 16 39 H 0.33 6.88 7.98 -39.29 -0.31 6.57 16 40 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 41 H 0.00 0.07 7.42 -51.93 -0.39 -0.31 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.07 0.97 6.03 -51.93 -0.31 0.65 16 LS Contribution 369.69 15.07 5.57 5.57 Total: -1.00 -29.55 369.69 -9.60 -39.15 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -8.29 Total: 5.74 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.20 Total: -14.12 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.02 Total: -39.75 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.68 Total: -12.79 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.55 -9.60 -39.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173603173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.503 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds