Wall clock time and date at job start Tue Mar 31 2020 07:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47065 * 2 1 4 4 C 1.34225 * 117.00150 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00207 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00091 * 179.97438 * 4 3 2 7 7 H 1.08997 * 115.55602 * 31.89886 * 6 4 3 8 8 C 1.53041 * 117.50443 * 177.59787 * 6 4 3 9 9 C 1.52802 * 59.96454 * 107.50476 * 8 6 4 10 10 C 1.53153 * 117.75316 * 107.63539 * 9 8 6 11 11 C 1.53184 * 108.88497 * 199.61671 * 10 9 8 12 12 C 1.52934 * 109.45103 * 303.43213 * 11 10 9 13 13 N 1.46896 * 109.41425 * 183.09196 * 12 11 10 14 14 C 1.46902 * 111.00202 * 84.64078 * 13 12 11 15 15 H 1.09000 * 109.47211 * 325.00690 * 14 13 12 16 16 C 1.53001 * 109.47087 * 85.00259 * 14 13 12 17 17 C 1.50699 * 109.47532 * 205.00517 * 14 13 12 18 18 H 1.07997 * 119.99929 * 359.97438 * 17 14 13 19 19 C 1.37875 * 119.99999 * 180.02562 * 17 14 13 20 20 N 1.31519 * 120.00092 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99838 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47138 * 59.99605 * 21 19 17 23 23 H 1.48501 * 109.46855 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47399 * 299.99579 * 21 19 17 25 25 C 1.52949 * 109.82199 * 62.98505 * 12 11 10 26 26 C 1.53154 * 117.74919 * 252.36919 * 9 8 6 27 27 H 1.09001 * 109.47444 * 299.99994 * 1 2 3 28 28 H 1.09000 * 109.47189 * 60.00561 * 1 2 3 29 29 H 1.08999 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47520 * 239.99512 * 2 1 3 31 31 H 1.09010 * 109.47008 * 119.99462 * 2 1 3 32 32 H 1.09003 * 117.50060 * 214.98411 * 8 6 4 33 33 H 1.08999 * 117.50317 * 0.02562 * 8 6 4 34 34 H 1.09001 * 109.56194 * 319.43316 * 10 9 8 35 35 H 1.08994 * 109.56716 * 79.79267 * 10 9 8 36 36 H 1.08999 * 109.46911 * 183.44349 * 11 10 9 37 37 H 1.08996 * 109.47964 * 63.42805 * 11 10 9 38 38 H 1.09001 * 109.35723 * 302.91546 * 12 11 10 39 39 H 1.00905 * 111.00080 * 320.69012 * 13 12 11 40 40 H 1.08995 * 109.47531 * 180.02562 * 16 14 13 41 41 H 1.09004 * 109.46983 * 300.00436 * 16 14 13 42 42 H 1.09005 * 109.47151 * 59.99894 * 16 14 13 43 43 H 0.97004 * 119.99434 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.47279 * 177.01882 * 25 12 11 45 45 H 1.09001 * 109.47294 * 57.00784 * 25 12 11 46 46 H 1.08998 * 109.57201 * 280.20316 * 26 9 8 47 47 H 1.09001 * 109.56965 * 40.43838 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.3287 3.6914 0.5189 8 6 5.4440 3.0723 0.0575 9 6 4.6974 3.3802 -1.2396 10 6 4.5822 4.8469 -1.6652 11 6 3.4289 4.9842 -2.6640 12 6 3.6666 4.0464 -3.8484 13 7 2.5992 4.2323 -4.8403 14 6 2.9041 5.3547 -5.7378 15 1 3.4251 6.1337 -5.1813 16 6 3.7929 4.8650 -6.8829 17 6 1.6215 5.9112 -6.3000 18 1 0.6745 5.4746 -6.0192 19 6 1.6570 6.9771 -7.1739 20 7 2.8103 7.5085 -7.5163 21 14 0.0671 7.6664 -7.8713 22 1 -0.7957 8.1419 -6.7602 23 1 0.3755 8.8010 -8.7784 24 1 -0.6423 6.6047 -8.6294 25 6 3.6670 2.5943 -3.3682 26 6 4.8279 2.3801 -2.3922 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.8541 3.9148 0.6145 33 1 6.0295 2.1537 0.0954 34 1 4.3833 5.4662 -0.7905 35 1 5.5126 5.1646 -2.1358 36 1 3.3772 6.0132 -3.0200 37 1 2.4911 4.7213 -2.1748 38 1 4.6293 4.2773 -4.3046 39 1 1.7056 4.3620 -4.3899 40 1 4.0195 5.6978 -7.5486 41 1 4.7206 4.4625 -6.4762 42 1 3.2720 4.0858 -7.4395 43 1 2.8352 8.2586 -8.1308 44 1 3.7838 1.9287 -4.2235 45 1 2.7245 2.3777 -2.8652 46 1 5.7739 2.5403 -2.9093 47 1 4.7942 1.3639 -1.9994 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173603173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:26 Heat of formation + Delta-G solvation = -100.301115 kcal Electronic energy + Delta-G solvation = -24821.858103 eV Core-core repulsion = 21389.729803 eV Total energy + Delta-G solvation = -3432.128300 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.95507 -40.21411 -38.21506 -37.30824 -35.45991 -33.37179 -32.61497 -31.88170 -30.13169 -27.48966 -26.98901 -25.78317 -23.85024 -23.60300 -22.25817 -21.67093 -21.32909 -19.96076 -18.77756 -18.43863 -17.62968 -17.32038 -16.81924 -16.44466 -15.70153 -15.41579 -15.21693 -15.05365 -14.90494 -14.43132 -14.25171 -13.87520 -13.77681 -13.62519 -13.32414 -13.21118 -13.08101 -12.93108 -12.80654 -12.77342 -12.54858 -12.48862 -12.29706 -12.19660 -12.03914 -11.96456 -11.68844 -11.53511 -11.47565 -11.17525 -10.98677 -10.87129 -10.68042 -10.53204 -8.92333 -8.11108 -6.24683 1.02882 1.43076 1.44842 1.52332 1.63905 2.42856 2.71253 3.17453 3.48622 3.56928 3.62715 3.76811 3.87555 3.94064 3.99404 4.06603 4.11970 4.31626 4.33138 4.38150 4.49262 4.54245 4.73456 4.77471 4.85731 4.86649 4.88594 4.90627 4.94880 4.99454 5.04883 5.09706 5.13136 5.16508 5.20147 5.22790 5.28125 5.39599 5.45603 5.49611 5.56787 5.72846 5.90323 6.25133 6.54240 6.72168 6.84276 7.05889 7.45727 8.94285 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018222 B = 0.003663 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.226504 B = 7641.465727 C = 8468.764924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.495 3.505 5 O -0.535 6.535 6 C -0.173 4.173 7 H 0.150 0.850 8 C -0.120 4.120 9 C -0.084 4.084 10 C -0.070 4.070 11 C -0.138 4.138 12 C 0.092 3.908 13 N -0.686 5.686 14 C 0.220 3.780 15 H -0.025 1.025 16 C -0.113 4.113 17 C -0.537 4.537 18 H 0.057 0.943 19 C 0.015 3.985 20 N -0.917 5.917 21 Si 0.960 3.040 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.091 4.091 26 C -0.089 4.089 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.137 0.863 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.330 0.670 40 H 0.056 0.944 41 H 0.019 0.981 42 H 0.023 0.977 43 H 0.262 0.738 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.078 0.922 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 -10.334 18.101 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.341 3.659 5 O -0.426 6.426 6 C -0.192 4.192 7 H 0.167 0.833 8 C -0.157 4.157 9 C -0.084 4.084 10 C -0.107 4.107 11 C -0.177 4.177 12 C -0.019 4.019 13 N -0.316 5.316 14 C 0.111 3.889 15 H -0.007 1.007 16 C -0.172 4.172 17 C -0.575 4.575 18 H 0.075 0.925 19 C -0.184 4.184 20 N -0.557 5.557 21 Si 0.785 3.215 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.199 1.199 25 C -0.129 4.129 26 C -0.127 4.127 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.155 0.845 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.148 0.852 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.855 -10.984 17.529 20.769 hybrid contribution -0.950 0.982 -0.200 1.381 sum 0.906 -10.002 17.329 20.029 Atomic orbital electron populations 1.21827 0.90704 1.04355 1.03578 1.23266 0.96957 0.79225 1.02456 1.86511 1.24133 1.33670 1.83477 1.22935 0.80518 0.91624 0.70858 1.90614 1.60999 1.43811 1.47171 1.22095 0.97251 0.92498 1.07307 0.83251 1.23307 0.89490 1.04731 0.98176 1.21566 1.01431 0.96557 0.88866 1.21125 0.98454 0.92053 0.99109 1.22146 0.99554 0.99146 0.96899 1.21503 0.94918 0.94730 0.90711 1.60720 1.04456 1.45673 1.20726 1.18848 0.94145 0.86093 0.89807 1.00731 1.21564 0.96525 0.99314 0.99797 1.21569 0.93230 1.15062 1.27668 0.92525 1.25696 0.99340 0.96853 0.96560 1.70019 1.25986 1.24536 1.35142 0.85592 0.79819 0.77758 0.78320 1.19536 1.20948 1.19856 1.21354 0.97959 0.95703 0.97916 1.21260 0.99168 0.97531 0.94730 0.90999 0.91942 0.88075 0.91840 0.90795 0.84522 0.87907 0.89319 0.90574 0.93740 0.91798 0.92729 0.85240 0.92476 0.96202 0.95743 0.92896 0.92518 0.93008 0.90336 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.29 71.98 0.74 -1.36 16 2 C 0.05 1.05 6.19 71.98 0.45 1.50 16 3 O -0.36 -8.75 10.22 -51.37 -0.53 -9.27 16 4 C 0.50 12.42 6.73 71.24 0.48 12.90 16 5 O -0.54 -15.54 14.69 21.96 0.32 -15.22 16 6 C -0.17 -3.52 6.00 -11.58 -0.07 -3.59 16 7 H 0.15 2.50 8.14 -2.39 -0.02 2.48 16 8 C -0.12 -2.08 9.50 30.54 0.29 -1.79 16 9 C -0.08 -1.82 1.97 -52.20 -0.10 -1.92 16 10 C -0.07 -1.57 5.67 30.71 0.17 -1.40 16 11 C -0.14 -4.22 5.17 30.63 0.16 -4.06 16 12 C 0.09 3.21 2.19 44.88 0.10 3.31 16 13 N -0.69 -29.34 6.04 -473.51 -2.86 -32.20 16 14 C 0.22 11.23 2.40 44.17 0.11 11.33 16 15 H -0.02 -1.39 7.07 -2.39 -0.02 -1.40 16 16 C -0.11 -5.79 9.17 71.98 0.66 -5.13 16 17 C -0.54 -29.63 8.59 25.60 0.22 -29.41 16 18 H 0.06 3.07 7.62 -2.91 -0.02 3.05 16 19 C 0.01 0.81 5.30 84.65 0.45 1.26 16 20 N -0.92 -52.94 11.32 21.45 0.24 -52.69 16 21 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 C -0.09 -2.78 5.53 30.64 0.17 -2.61 16 26 C -0.09 -2.29 5.28 30.70 0.16 -2.12 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 31 H 0.07 1.32 8.13 -2.38 -0.02 1.30 16 32 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 1.96 7.67 -2.39 -0.02 1.94 16 34 H 0.09 1.60 8.09 -2.39 -0.02 1.58 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.04 1.58 7.36 -2.39 -0.02 1.56 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 2.08 7.11 -2.39 -0.02 2.06 16 39 H 0.33 13.95 7.98 -89.69 -0.72 13.24 16 40 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 41 H 0.02 0.89 7.42 -2.38 -0.02 0.88 16 42 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 44 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 45 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.06 1.75 6.03 -2.39 -0.01 1.73 16 Total: -1.00 -63.83 369.69 3.41 -60.42 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.22 Total: 26.50 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 3.98 Total: -23.09 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -2.62 Total: -84.90 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.20 Total: -24.49 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -63.83 3.41 -60.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173603173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.878 kcal (2) G-P(sol) polarization free energy of solvation -63.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds