Wall clock time and date at job start Tue Mar 31 2020 07:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45202 * 109.47185 * 2 1 4 4 C 1.34233 * 116.99943 * 179.97438 * 3 2 1 5 5 O 1.20817 * 119.99984 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99704 * 179.97438 * 4 3 2 7 7 H 1.08992 * 115.55228 * 34.32092 * 6 4 3 8 8 C 1.53027 * 117.49945 * 248.58830 * 6 4 3 9 9 C 1.52805 * 117.49934 * 179.97438 * 6 4 3 10 10 C 1.53147 * 117.75278 * 215.11085 * 9 6 4 11 11 C 1.53179 * 108.88730 * 199.62605 * 10 9 6 12 12 C 1.52933 * 109.45258 * 303.43699 * 11 10 9 13 13 N 1.46900 * 109.41533 * 183.08679 * 12 11 10 14 14 C 1.46892 * 111.00430 * 153.94826 * 13 12 11 15 15 H 1.09001 * 109.46848 * 34.63121 * 14 13 12 16 16 C 1.53001 * 109.47327 * 154.62837 * 14 13 12 17 17 C 1.50699 * 109.47320 * 274.63147 * 14 13 12 18 18 H 1.07994 * 120.00122 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00042 * 179.97438 * 17 14 13 20 20 N 1.31520 * 120.00014 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00262 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.46915 * 89.99895 * 21 19 17 23 23 H 1.48497 * 109.47619 * 210.00056 * 21 19 17 24 24 H 1.48505 * 109.46918 * 330.00611 * 21 19 17 25 25 C 1.52941 * 109.76693 * 63.01391 * 12 11 10 26 26 C 1.53155 * 117.74962 * 359.85556 * 9 6 4 27 27 H 1.08993 * 109.46903 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46774 * 300.00062 * 1 2 3 29 29 H 1.08998 * 109.46466 * 60.00103 * 1 2 3 30 30 H 1.08993 * 109.47450 * 239.99876 * 2 1 3 31 31 H 1.09007 * 109.46869 * 119.99458 * 2 1 3 32 32 H 1.09002 * 117.50482 * 145.04836 * 8 6 4 33 33 H 1.08998 * 117.50587 * 359.97438 * 8 6 4 34 34 H 1.09007 * 109.56995 * 79.80620 * 10 9 6 35 35 H 1.08999 * 109.67070 * 319.50786 * 10 9 6 36 36 H 1.09000 * 109.47212 * 183.44108 * 11 10 9 37 37 H 1.08995 * 109.47315 * 63.43107 * 11 10 9 38 38 H 1.09002 * 109.41047 * 302.94409 * 12 11 10 39 39 H 1.00899 * 110.99673 * 29.99167 * 13 12 11 40 40 H 1.09004 * 109.47084 * 185.78254 * 16 14 13 41 41 H 1.08998 * 109.47442 * 305.78316 * 16 14 13 42 42 H 1.09001 * 109.46793 * 65.78239 * 16 14 13 43 43 H 0.96998 * 119.99804 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.47454 * 56.98149 * 25 12 11 45 45 H 1.09002 * 109.47724 * 176.99024 * 25 12 11 46 46 H 1.08989 * 109.56687 * 280.19064 * 26 9 6 47 47 H 1.08998 * 109.56555 * 40.43775 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.3497 3.6826 0.5537 8 6 4.6494 3.4003 -1.2636 9 6 5.4430 3.0714 0.0012 10 6 6.0555 4.2390 0.7804 11 6 7.4789 4.4832 0.2700 12 6 8.2952 3.1967 0.4024 13 7 9.6796 3.4514 -0.0178 14 6 10.6079 2.5182 0.6341 15 1 10.1235 1.5493 0.7556 16 6 11.8603 2.3574 -0.2299 17 6 10.9964 3.0585 1.9862 18 1 10.5937 4.0007 2.3273 19 6 11.8653 2.3494 2.7883 20 7 12.3554 1.2017 2.3732 21 14 12.3475 3.0195 4.4640 22 1 11.3920 2.5259 5.4880 23 1 13.7184 2.5615 4.8045 24 1 12.3151 4.5038 4.4315 25 6 7.6883 2.1058 -0.4811 26 6 6.2722 1.7838 0.0064 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.5577 4.4503 -1.5416 33 1 4.7125 2.6974 -2.0943 34 1 6.0854 3.9937 1.8421 35 1 5.4547 5.1359 0.6298 36 1 7.9459 5.2722 0.8596 37 1 7.4429 4.7846 -0.7768 38 1 8.2868 2.8677 1.4416 39 1 9.9422 4.4086 0.1635 40 1 12.5026 1.5891 0.2006 41 1 11.5704 2.0650 -1.2391 42 1 12.4001 3.3036 -0.2668 43 1 12.9669 0.7031 2.9373 44 1 7.6481 2.4545 -1.5131 45 1 8.3039 1.2080 -0.4246 46 1 6.3159 1.3818 1.0185 47 1 5.8133 1.0515 -0.6579 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173603174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:29 Heat of formation + Delta-G solvation = -79.523337 kcal Electronic energy + Delta-G solvation = -24459.089924 eV Core-core repulsion = 21027.862616 eV Total energy + Delta-G solvation = -3431.227308 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.94752 -39.07755 -36.87388 -35.99035 -33.76745 -32.02377 -31.48086 -30.57251 -28.50449 -25.71344 -25.04714 -24.75110 -22.96062 -22.63758 -21.07585 -20.17664 -19.71829 -18.43311 -17.81778 -16.72961 -16.48786 -16.21857 -15.29422 -14.82999 -14.62242 -14.24827 -14.13858 -13.58812 -13.30521 -13.17010 -13.03925 -12.83937 -12.56022 -12.30686 -12.16453 -11.99407 -11.90832 -11.76687 -11.40219 -11.22500 -11.01288 -10.87997 -10.77165 -10.66520 -10.54514 -10.38523 -10.21017 -10.12892 -9.95871 -9.69131 -9.45453 -9.38206 -9.00103 -8.36049 -7.18595 -5.95692 -4.07355 2.02465 2.45319 3.28868 3.35971 3.38401 3.64098 4.42722 4.45449 4.52588 4.62536 4.65484 4.69910 4.90839 4.98360 5.07329 5.23611 5.32156 5.32915 5.40901 5.46179 5.57150 5.63381 5.66124 5.73083 5.79262 5.88884 5.95381 6.04188 6.17753 6.25291 6.30587 6.37677 6.54306 6.64703 6.76681 6.89869 6.98671 7.02718 7.21226 7.39127 7.60606 7.71718 7.80194 8.13326 8.24640 8.40236 8.74835 9.06483 9.60073 11.05825 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.021570 B = 0.003170 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.773056 B = 8831.033987 C = 9141.726401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.491 3.509 5 O -0.495 6.495 6 C -0.174 4.174 7 H 0.131 0.869 8 C -0.140 4.140 9 C -0.069 4.069 10 C -0.080 4.080 11 C -0.114 4.114 12 C 0.092 3.908 13 N -0.690 5.690 14 C 0.208 3.792 15 H 0.032 0.968 16 C -0.123 4.123 17 C -0.542 4.542 18 H 0.052 0.948 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.101 4.101 26 C -0.085 4.085 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.326 0.674 40 H 0.076 0.924 41 H 0.013 0.987 42 H 0.024 0.976 43 H 0.260 0.740 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.450 2.404 -6.005 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.334 3.666 5 O -0.382 6.382 6 C -0.193 4.193 7 H 0.149 0.851 8 C -0.177 4.177 9 C -0.070 4.070 10 C -0.118 4.118 11 C -0.151 4.151 12 C -0.019 4.019 13 N -0.319 5.319 14 C 0.100 3.900 15 H 0.050 0.950 16 C -0.181 4.181 17 C -0.582 4.582 18 H 0.070 0.930 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.716 3.284 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.139 4.139 26 C -0.123 4.123 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.143 0.857 40 H 0.095 0.905 41 H 0.032 0.968 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.163 1.540 -6.527 22.200 hybrid contribution 0.233 0.503 2.062 2.135 sum -20.930 2.043 -4.465 21.498 Atomic orbital electron populations 1.21802 0.92705 1.02925 1.03460 1.23017 0.95262 0.80340 1.02697 1.86490 1.24771 1.32253 1.84161 1.22740 0.80239 0.91386 0.72195 1.90670 1.59582 1.43048 1.44937 1.21914 0.97227 0.92939 1.07177 0.85090 1.23146 1.00996 1.02598 0.90910 1.21774 0.87761 0.98971 0.98453 1.21191 0.96415 0.94851 0.99381 1.21673 0.93928 0.98257 1.01289 1.21310 0.89479 0.93615 0.97448 1.60947 1.01073 1.08099 1.61789 1.19151 0.89032 0.91655 0.90153 0.94976 1.21670 0.99606 1.00607 0.96242 1.21848 1.27626 1.06455 1.02227 0.92972 1.24937 0.95898 0.94830 0.97941 1.69904 1.31897 1.13801 1.36888 0.86671 0.77827 0.79220 0.84706 1.20793 1.21187 1.20038 1.21534 0.94030 0.99140 0.99225 1.21477 0.94497 0.93483 1.02811 0.90266 0.91508 0.91518 0.91240 0.91176 0.87336 0.88148 0.91149 0.91877 0.92050 0.91625 0.93571 0.85710 0.90514 0.96805 0.95697 0.92973 0.92306 0.91846 0.91640 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -4.09 10.22 -39.27 -0.40 -4.49 16 4 C 0.49 6.31 7.72 36.01 0.28 6.59 16 5 O -0.50 -7.65 12.83 -18.74 -0.24 -7.89 16 6 C -0.17 -1.93 6.03 -91.86 -0.55 -2.49 16 7 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 8 C -0.14 -1.46 9.64 -26.77 -0.26 -1.72 16 9 C -0.07 -0.88 1.97 -154.50 -0.30 -1.19 16 10 C -0.08 -1.01 5.67 -26.56 -0.15 -1.16 16 11 C -0.11 -1.67 5.21 -26.67 -0.14 -1.81 16 12 C 0.09 1.72 2.21 -67.78 -0.15 1.57 16 13 N -0.69 -14.70 6.05 -101.03 -0.61 -15.31 16 14 C 0.21 5.29 2.38 -68.87 -0.16 5.13 16 15 H 0.03 0.91 7.15 -51.93 -0.37 0.53 16 16 C -0.12 -3.09 9.21 37.16 0.34 -2.75 16 17 C -0.54 -14.86 8.28 -34.44 -0.29 -15.14 16 18 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 19 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 20 N -0.89 -25.64 11.39 55.43 0.63 -25.01 16 21 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C -0.10 -1.77 5.43 -26.66 -0.14 -1.92 16 26 C -0.09 -1.33 4.25 -26.55 -0.11 -1.44 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 31 H 0.07 0.65 8.13 -51.92 -0.42 0.23 16 32 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.06 0.90 8.06 -51.93 -0.42 0.49 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 1.00 7.64 -51.93 -0.40 0.60 16 39 H 0.33 6.82 7.97 -39.29 -0.31 6.51 16 40 H 0.08 2.09 6.25 -51.93 -0.32 1.76 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 1.26 7.45 -51.93 -0.39 0.87 16 46 H 0.06 1.13 8.14 -51.94 -0.42 0.71 16 47 H 0.08 1.36 5.80 -51.93 -0.30 1.06 16 LS Contribution 369.56 15.07 5.57 5.57 Total: -1.00 -29.98 369.56 -9.59 -39.57 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -8.39 Total: 5.47 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -1.13 Total: -14.35 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.02 Total: -40.32 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.64 Total: -12.38 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.98 -9.59 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173603174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.955 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds