Wall clock time and date at job start Tue Mar 31 2020 07:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45197 * 109.47071 * 2 1 4 4 C 1.34230 * 116.99724 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00363 * 0.02562 * 4 3 2 6 6 C 1.50710 * 119.99731 * 180.02562 * 4 3 2 7 7 H 1.09002 * 115.56329 * 325.68283 * 6 4 3 8 8 C 1.53038 * 117.50061 * 111.39359 * 6 4 3 9 9 C 1.52804 * 117.49842 * 179.97438 * 6 4 3 10 10 C 1.53149 * 117.75389 * 0.14717 * 9 6 4 11 11 C 1.53181 * 108.88670 * 199.61839 * 10 9 6 12 12 C 1.52936 * 109.45280 * 303.44077 * 11 10 9 13 13 N 1.46905 * 109.40999 * 183.09084 * 12 11 10 14 14 C 1.46901 * 110.99734 * 305.68435 * 13 12 11 15 15 C 1.46900 * 111.00137 * 69.63798 * 13 12 11 16 16 C 1.50693 * 109.46896 * 169.99908 * 15 13 12 17 17 H 1.07997 * 120.00521 * 0.02562 * 16 15 13 18 18 C 1.37889 * 119.99860 * 180.02562 * 16 15 13 19 19 N 1.31515 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99731 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47303 * 59.99956 * 20 18 16 22 22 H 1.48502 * 109.46750 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46883 * 299.99675 * 20 18 16 24 24 C 1.52947 * 109.82443 * 62.98114 * 12 11 10 25 25 C 1.53153 * 117.74629 * 144.89294 * 9 6 4 26 26 H 1.09005 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47334 * 300.00137 * 1 2 3 28 28 H 1.09006 * 109.46576 * 60.00007 * 1 2 3 29 29 H 1.08993 * 109.47334 * 239.99863 * 2 1 3 30 30 H 1.09006 * 109.46576 * 119.99993 * 2 1 3 31 31 H 1.08995 * 117.50303 * 0.02562 * 8 6 4 32 32 H 1.09001 * 117.49745 * 214.95073 * 8 6 4 33 33 H 1.09004 * 109.56922 * 319.44459 * 10 9 6 34 34 H 1.09003 * 109.56553 * 79.80116 * 10 9 6 35 35 H 1.08996 * 109.47345 * 183.44028 * 11 10 9 36 36 H 1.08998 * 109.47511 * 63.43935 * 11 10 9 37 37 H 1.09002 * 109.35550 * 302.90685 * 12 11 10 38 38 H 1.09005 * 109.46725 * 60.00451 * 14 13 12 39 39 H 1.09002 * 109.47158 * 179.97438 * 14 13 12 40 40 H 1.08997 * 109.47397 * 300.00379 * 14 13 12 41 41 H 1.08992 * 109.47404 * 290.00057 * 15 13 12 42 42 H 1.09001 * 109.46684 * 50.00334 * 15 13 12 43 43 H 0.96996 * 119.99497 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.47057 * 177.01791 * 24 12 11 45 45 H 1.08999 * 109.46890 * 57.00630 * 24 12 11 46 46 H 1.09000 * 109.56231 * 280.18930 * 25 9 6 47 47 H 1.08999 * 109.57334 * 40.43298 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 1 3.3503 3.6826 -0.5532 8 6 4.6480 3.4008 1.2655 9 6 5.4429 3.0713 0.0024 10 6 6.2722 1.7838 -0.0006 11 6 7.6881 2.1047 0.4876 12 6 8.2958 3.1964 -0.3944 13 7 9.6796 3.4512 0.0279 14 6 9.7434 3.7626 1.4621 15 6 10.5489 2.3143 -0.3032 16 6 11.9885 2.7024 -0.0844 17 1 12.2332 3.6942 0.2661 18 6 12.9934 1.7912 -0.3315 19 7 12.6955 0.5836 -0.7588 20 14 14.7779 2.2721 -0.0595 21 1 14.9776 2.6494 1.3627 22 1 15.6567 1.1228 -0.3944 23 1 15.1178 3.4260 -0.9303 24 6 7.4793 4.4830 -0.2639 25 6 6.0566 4.2385 -0.7765 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 4.7101 2.6983 2.0965 32 1 4.5559 4.4509 1.5427 33 1 5.8134 1.0525 0.6649 34 1 6.3175 1.3811 -1.0126 35 1 8.3041 1.2072 0.4314 36 1 7.6465 2.4527 1.5197 37 1 8.2890 2.8668 -1.4334 38 1 9.3527 2.9210 2.0342 39 1 10.7790 3.9465 1.7482 40 1 9.1459 4.6506 1.6681 41 1 10.2996 1.4679 0.3364 42 1 10.4022 2.0367 -1.3470 43 1 13.4024 -0.0575 -0.9323 44 1 7.9473 5.2717 -0.8530 45 1 7.4416 4.7848 0.7828 46 1 6.0883 3.9925 -1.8379 47 1 5.4539 5.1343 -0.6272 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173605592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:15 Heat of formation + Delta-G solvation = -86.367740 kcal Electronic energy + Delta-G solvation = -24491.612600 eV Core-core repulsion = 21060.088496 eV Total energy + Delta-G solvation = -3431.524104 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.98699 -40.45565 -38.54738 -37.33275 -35.15902 -33.73651 -32.60075 -31.85181 -29.42903 -28.13686 -26.50705 -25.91685 -24.09894 -23.66757 -23.24605 -21.70888 -20.82447 -19.52564 -18.79120 -18.52341 -17.63251 -17.24039 -16.80680 -16.52535 -15.99052 -15.47567 -15.34060 -15.10555 -14.99748 -14.45471 -14.38738 -13.98557 -13.96532 -13.76231 -13.47567 -13.30615 -13.03890 -12.88014 -12.86177 -12.71824 -12.61433 -12.50687 -12.44364 -12.33980 -12.04222 -11.94856 -11.56684 -11.55395 -11.39167 -11.26553 -10.90619 -10.88671 -10.67949 -10.58198 -8.87206 -8.19887 -6.30888 1.02939 1.39672 1.43836 1.51659 1.59772 2.40037 2.69773 3.11730 3.37328 3.54339 3.60239 3.72766 3.91270 3.95778 3.97959 4.06638 4.14753 4.23332 4.32275 4.39226 4.49273 4.54547 4.57280 4.73896 4.77858 4.83586 4.85160 4.89860 4.90450 4.98279 5.03719 5.03773 5.08949 5.12727 5.19040 5.23369 5.25860 5.28028 5.35828 5.48338 5.52114 5.60553 5.67159 6.07465 6.39374 6.70888 6.74130 6.86915 7.38926 8.90937 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.029331 B = 0.002933 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.377204 B = 9544.558769 C =10174.937076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.357 6.357 4 C 0.486 3.514 5 O -0.533 6.533 6 C -0.161 4.161 7 H 0.164 0.836 8 C -0.122 4.122 9 C -0.092 4.092 10 C -0.069 4.069 11 C -0.139 4.139 12 C 0.082 3.918 13 N -0.543 5.543 14 C 0.038 3.962 15 C 0.211 3.789 16 C -0.524 4.524 17 H 0.065 0.935 18 C -0.003 4.003 19 N -0.938 5.938 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.266 1.266 24 C -0.094 4.094 25 C -0.072 4.072 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.023 0.977 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.011 0.989 39 H 0.051 0.949 40 H 0.085 0.915 41 H -0.039 1.039 42 H -0.008 1.008 43 H 0.264 0.736 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.481 6.712 3.482 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.331 3.669 5 O -0.423 6.423 6 C -0.180 4.180 7 H 0.182 0.818 8 C -0.159 4.159 9 C -0.092 4.092 10 C -0.107 4.107 11 C -0.178 4.178 12 C -0.026 4.026 13 N -0.265 5.265 14 C -0.110 4.110 15 C 0.084 3.916 16 C -0.562 4.562 17 H 0.083 0.917 18 C -0.201 4.201 19 N -0.578 5.578 20 Si 0.797 3.203 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.191 1.191 24 C -0.132 4.132 25 C -0.109 4.109 26 H 0.116 0.884 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.162 0.838 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.070 0.930 40 H 0.103 0.897 41 H -0.022 1.022 42 H 0.010 0.990 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -25.037 6.648 3.168 26.098 hybrid contribution 1.003 -1.817 0.226 2.088 sum -24.034 4.831 3.395 24.749 Atomic orbital electron populations 1.21814 0.90120 1.04334 1.03869 1.23270 0.97272 0.79370 1.02240 1.86491 1.23880 1.33446 1.83608 1.23243 0.80532 0.91917 0.71192 1.90673 1.60459 1.44441 1.46735 1.22043 0.95729 0.92411 1.07807 0.81825 1.23300 0.98438 1.04368 0.89804 1.21603 0.88634 0.97483 1.01476 1.21176 0.93151 0.95567 1.00834 1.22113 0.96503 0.98447 1.00710 1.21768 0.87799 0.95693 0.97380 1.62280 1.07212 1.39820 1.17197 1.22257 1.01548 0.99485 0.87737 1.19302 0.92008 0.87087 0.93172 1.21497 0.91659 0.98979 1.44078 0.91656 1.26000 1.04408 0.94737 0.94921 1.70109 1.34531 1.06159 1.47042 0.85391 0.78127 0.77734 0.79094 1.19064 1.20958 1.19123 1.21452 0.93920 0.95403 1.02385 1.21185 0.95022 0.96011 0.98707 0.88396 0.91029 0.91094 0.91798 0.91698 0.89017 0.83833 0.90944 0.93874 0.95857 0.91254 0.93335 0.97014 0.92978 0.89654 1.02156 0.98984 0.92776 0.90917 0.90705 0.91602 0.87666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 10.29 71.98 0.74 -0.73 16 2 C 0.05 0.89 6.19 71.98 0.45 1.33 16 3 O -0.36 -7.40 10.22 -51.42 -0.53 -7.93 16 4 C 0.49 11.64 7.72 71.24 0.55 12.19 16 5 O -0.53 -16.54 12.83 21.98 0.28 -16.26 16 6 C -0.16 -2.94 6.03 -11.59 -0.07 -3.01 16 7 H 0.16 2.00 8.14 -2.39 -0.02 1.98 16 8 C -0.12 -2.03 9.63 30.55 0.29 -1.74 16 9 C -0.09 -2.03 1.97 -52.20 -0.10 -2.14 16 10 C -0.07 -2.18 4.24 30.70 0.13 -2.05 16 11 C -0.14 -5.03 4.41 30.63 0.14 -4.89 16 12 C 0.08 3.04 2.10 44.88 0.09 3.13 16 13 N -0.54 -24.26 4.70 -901.84 -4.24 -28.50 16 14 C 0.04 1.48 8.60 127.69 1.10 2.58 16 15 C 0.21 11.88 4.28 85.55 0.37 12.25 16 16 C -0.52 -30.86 8.46 25.60 0.22 -30.65 16 17 H 0.07 3.72 7.12 -2.91 -0.02 3.70 16 18 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 19 N -0.94 -58.93 13.29 21.45 0.28 -58.65 16 20 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 C -0.09 -2.45 5.05 30.64 0.15 -2.29 16 25 C -0.07 -1.42 5.67 30.71 0.17 -1.25 16 26 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 30 H 0.06 1.15 8.13 -2.38 -0.02 1.13 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 2.44 5.81 -2.38 -0.01 2.42 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.02 1.02 6.76 -2.39 -0.02 1.00 16 36 H 0.07 2.35 6.51 -2.39 -0.02 2.34 16 37 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 38 H 0.01 0.45 6.28 -2.38 -0.01 0.44 16 39 H 0.05 2.21 6.76 -2.39 -0.02 2.20 16 40 H 0.08 2.64 6.53 -2.39 -0.02 2.63 16 41 H -0.04 -2.41 6.97 -2.39 -0.02 -2.43 16 42 H -0.01 -0.49 7.93 -2.39 -0.02 -0.51 16 43 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 1.77 6.70 -2.39 -0.02 1.75 16 46 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.10 1.34 8.09 -2.39 -0.02 1.32 16 Total: -1.00 -73.22 363.26 3.45 -69.77 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.93 Total: 10.95 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 4.69 Total: -16.98 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -3.95 Total: -87.15 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.24 Total: -24.19 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.22 3.45 -69.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173605592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.600 kcal (2) G-P(sol) polarization free energy of solvation -73.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds