Wall clock time and date at job start Tue Mar 31 2020 07:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45190 * 109.47390 * 2 1 4 4 C 1.34230 * 117.00014 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00048 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00087 * 180.02562 * 4 3 2 7 7 H 1.08998 * 115.55341 * 34.31299 * 6 4 3 8 8 C 1.53031 * 117.50358 * 248.58367 * 6 4 3 9 9 C 1.52806 * 117.50498 * 179.97438 * 6 4 3 10 10 C 1.53148 * 117.75469 * 215.11032 * 9 6 4 11 11 C 1.53179 * 108.88787 * 199.61915 * 10 9 6 12 12 C 1.52937 * 109.45094 * 303.43496 * 11 10 9 13 13 N 1.46906 * 109.40963 * 183.08591 * 12 11 10 14 14 C 1.46901 * 110.99793 * 154.99970 * 13 12 11 15 15 C 1.53000 * 109.46769 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46912 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99923 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47093 * 90.00088 * 20 18 16 22 22 H 1.48495 * 109.46891 * 210.00496 * 20 18 16 23 23 H 1.48504 * 109.47189 * 330.00185 * 20 18 16 24 24 C 1.52943 * 109.82588 * 62.98319 * 12 11 10 25 25 C 1.53154 * 117.74706 * 359.84831 * 9 6 4 26 26 H 1.08996 * 109.47643 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46615 * 299.99958 * 1 2 3 28 28 H 1.09001 * 109.47280 * 59.99819 * 1 2 3 29 29 H 1.09006 * 109.46483 * 240.00267 * 2 1 3 30 30 H 1.09005 * 109.47039 * 120.00617 * 2 1 3 31 31 H 1.09001 * 117.50741 * 145.04236 * 8 6 4 32 32 H 1.09004 * 117.50160 * 359.97438 * 8 6 4 33 33 H 1.09005 * 109.56561 * 79.79602 * 10 9 6 34 34 H 1.09000 * 109.66464 * 319.50281 * 10 9 6 35 35 H 1.09004 * 109.47167 * 183.43995 * 11 10 9 36 36 H 1.09004 * 109.47274 * 63.43034 * 11 10 9 37 37 H 1.08997 * 109.41182 * 302.94010 * 12 11 10 38 38 H 1.00899 * 110.99995 * 278.95573 * 13 12 11 39 39 H 1.09001 * 109.46874 * 60.00179 * 14 13 12 40 40 H 1.08992 * 109.47407 * 300.00197 * 14 13 12 41 41 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 42 42 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 43 43 H 0.97000 * 119.99684 * 180.02562 * 19 18 16 44 44 H 1.08993 * 109.47692 * 57.00881 * 24 12 11 45 45 H 1.08998 * 109.47398 * 177.02478 * 24 12 11 46 46 H 1.09000 * 109.56921 * 280.19944 * 25 9 6 47 47 H 1.09001 * 109.56909 * 40.56262 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0005 6 6 3.9209 2.9372 0.0000 7 1 3.3503 3.6818 0.5551 8 6 4.6484 3.4015 -1.2637 9 6 5.4431 3.0712 0.0000 10 6 6.0563 4.2378 0.7799 11 6 7.4794 4.4825 0.2686 12 6 8.2957 3.1958 0.3989 13 7 9.6797 3.4509 -0.0224 14 6 10.6056 2.5009 0.6086 15 6 12.0337 2.7971 0.1462 16 6 12.9835 1.8222 0.7930 17 1 12.6062 1.0666 1.4661 18 6 14.3341 1.8948 0.5254 19 7 15.1629 1.0436 1.0894 20 14 14.9865 3.2013 -0.6395 21 1 15.3258 4.4254 0.1296 22 1 16.2031 2.6926 -1.3224 23 1 13.9492 3.5244 -1.6519 24 6 7.6885 2.1047 -0.4843 25 6 6.2722 1.7835 0.0030 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8900 31 1 4.5565 4.4518 -1.5404 32 1 4.7107 2.6995 -2.0953 33 1 6.0871 3.9913 1.8413 34 1 5.4554 5.1349 0.6308 35 1 7.9469 5.2709 0.8586 36 1 7.4424 4.7851 -0.7780 37 1 8.2882 2.8657 1.4376 38 1 9.7626 3.4233 -1.0276 39 1 10.3347 1.4847 0.3220 40 1 10.5461 2.6008 1.6923 41 1 12.0929 2.6969 -0.9376 42 1 12.3049 3.8133 0.4325 43 1 16.1131 1.0950 0.9014 44 1 7.6475 2.4533 -1.5162 45 1 8.3044 1.2071 -0.4281 46 1 6.3168 1.3803 1.0147 47 1 5.8139 1.0526 -0.6634 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173609316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:24 Heat of formation + Delta-G solvation = -82.678387 kcal Electronic energy + Delta-G solvation = -23759.928249 eV Core-core repulsion = 20328.564128 eV Total energy + Delta-G solvation = -3431.364122 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.16331 -39.37820 -37.16258 -36.24195 -33.81051 -32.32448 -32.00826 -30.89028 -29.59997 -26.51941 -25.36388 -23.55886 -23.09992 -22.86513 -21.29480 -20.57956 -20.28313 -18.80937 -18.00743 -16.89510 -16.73707 -16.46663 -15.69770 -14.91678 -14.56986 -14.46974 -14.38203 -14.05940 -13.87684 -13.42106 -13.26272 -13.18298 -12.99818 -12.56200 -12.40049 -12.34018 -12.15332 -12.09480 -11.99740 -11.92466 -11.31646 -11.12502 -10.97673 -10.87574 -10.72995 -10.59484 -10.28893 -10.24357 -9.99017 -9.92900 -9.75142 -9.53500 -9.18225 -8.50261 -7.80587 -6.00984 -3.98993 1.82677 2.27773 3.35426 3.39935 3.41919 3.47070 4.23316 4.28932 4.38983 4.49314 4.51614 4.56260 4.65408 4.70033 4.80928 4.85802 5.07782 5.14787 5.24801 5.31927 5.33638 5.34500 5.38682 5.47140 5.51711 5.53200 5.58312 5.67950 5.81208 5.90602 5.96971 6.03469 6.12750 6.18836 6.25079 6.30597 6.39862 6.45664 6.55284 6.83921 7.20546 7.44272 7.52349 7.67854 7.82055 7.98276 8.57320 9.03521 9.61545 11.12407 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.031535 B = 0.002465 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.685942 B =11355.424649 C =11908.657755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.358 6.358 4 C 0.491 3.509 5 O -0.498 6.498 6 C -0.171 4.171 7 H 0.133 0.867 8 C -0.140 4.140 9 C -0.075 4.075 10 C -0.083 4.083 11 C -0.101 4.101 12 C 0.086 3.914 13 N -0.691 5.691 14 C 0.074 3.926 15 C -0.010 4.010 16 C -0.520 4.520 17 H 0.070 0.930 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.883 3.117 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.265 1.265 24 C -0.148 4.148 25 C -0.081 4.081 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.334 0.666 39 H 0.022 0.978 40 H 0.062 0.938 41 H 0.012 0.988 42 H 0.020 0.980 43 H 0.263 0.737 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.548 4.191 -4.077 31.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.275 6.275 4 C 0.335 3.665 5 O -0.385 6.385 6 C -0.190 4.190 7 H 0.151 0.849 8 C -0.177 4.177 9 C -0.075 4.075 10 C -0.121 4.121 11 C -0.139 4.139 12 C -0.025 4.025 13 N -0.320 5.320 14 C -0.054 4.054 15 C -0.048 4.048 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.711 3.289 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.190 1.190 24 C -0.187 4.187 25 C -0.119 4.119 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.152 0.848 39 H 0.040 0.960 40 H 0.081 0.919 41 H 0.031 0.969 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -30.035 4.307 -3.583 30.553 hybrid contribution 0.146 -0.463 -1.012 1.123 sum -29.889 3.843 -4.595 30.483 Atomic orbital electron populations 1.21807 0.92579 1.03032 1.03520 1.23038 0.95372 0.80154 1.02717 1.86488 1.24603 1.32420 1.84010 1.22712 0.80350 0.91306 0.72146 1.90664 1.59655 1.43072 1.45124 1.21906 0.96914 0.93091 1.07048 0.84886 1.23171 1.00858 1.02783 0.90887 1.21768 0.88066 0.98774 0.98876 1.21231 0.96485 0.95034 0.99316 1.21462 0.92927 0.97991 1.01551 1.21551 0.88488 0.93419 0.98994 1.60713 1.03932 1.54407 1.12932 1.21965 0.93039 0.91902 0.98538 1.19552 0.91606 0.97395 0.96266 1.21088 0.91274 1.15664 1.27817 0.91150 1.25022 0.96944 0.95787 0.95801 1.69921 1.03347 1.36971 1.44127 0.86719 0.78334 0.82098 0.81758 1.20269 1.21557 1.19001 1.22329 0.96352 1.00038 0.99985 1.21388 0.93731 0.93877 1.02876 0.90172 0.91454 0.91481 0.91210 0.91133 0.87154 0.88146 0.91059 0.91474 0.90889 0.92014 0.90834 0.84846 0.95990 0.91902 0.96930 0.96150 0.92779 0.92075 0.91629 0.91447 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.29 37.16 0.38 -0.38 16 2 C 0.06 0.47 6.19 37.16 0.23 0.70 16 3 O -0.36 -3.48 10.22 -39.26 -0.40 -3.88 16 4 C 0.49 5.31 7.72 36.00 0.28 5.58 16 5 O -0.50 -6.60 12.83 -18.75 -0.24 -6.84 16 6 C -0.17 -1.51 6.03 -91.86 -0.55 -2.06 16 7 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 8 C -0.14 -1.14 9.64 -26.77 -0.26 -1.40 16 9 C -0.07 -0.73 1.97 -154.51 -0.31 -1.03 16 10 C -0.08 -0.76 5.67 -26.56 -0.15 -0.91 16 11 C -0.10 -1.14 5.53 -26.67 -0.15 -1.29 16 12 C 0.09 1.19 2.38 -67.77 -0.16 1.03 16 13 N -0.69 -11.67 6.24 -106.79 -0.67 -12.34 16 14 C 0.07 1.52 5.42 -3.82 -0.02 1.50 16 15 C -0.01 -0.26 4.30 -27.88 -0.12 -0.38 16 16 C -0.52 -15.18 9.66 -34.44 -0.33 -15.52 16 17 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -28.40 13.96 55.43 0.77 -27.63 16 20 Si 0.88 22.26 27.47 -169.99 -4.67 17.60 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 24 C -0.15 -1.93 5.19 -26.66 -0.14 -2.07 16 25 C -0.08 -0.98 4.24 -26.55 -0.11 -1.09 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.10 7.80 -51.93 -0.40 0.69 16 38 H 0.33 5.41 8.48 -39.29 -0.33 5.08 16 39 H 0.02 0.46 7.36 -51.93 -0.38 0.08 16 40 H 0.06 1.33 8.05 -51.93 -0.42 0.91 16 41 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 42 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.97 7.36 -51.93 -0.38 0.58 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.09 1.14 5.81 -51.93 -0.30 0.84 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -32.38 371.02 -9.61 -41.99 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.49 Total: 0.97 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.51 Total: -15.46 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.11 Total: -39.97 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.64 Total: -10.71 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.38 -9.61 -41.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173609316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.689 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds