Wall clock time and date at job start Tue Mar 31 2020 07:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45190 * 109.47390 * 2 1 4 4 C 1.34230 * 117.00014 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00048 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00087 * 180.02562 * 4 3 2 7 7 H 1.08998 * 115.55341 * 34.31299 * 6 4 3 8 8 C 1.53031 * 117.50358 * 248.58367 * 6 4 3 9 9 C 1.52806 * 117.50498 * 179.97438 * 6 4 3 10 10 C 1.53148 * 117.75469 * 215.11032 * 9 6 4 11 11 C 1.53179 * 108.88787 * 199.61915 * 10 9 6 12 12 C 1.52937 * 109.45094 * 303.43496 * 11 10 9 13 13 N 1.46906 * 109.40963 * 183.08591 * 12 11 10 14 14 C 1.46901 * 110.99793 * 154.99970 * 13 12 11 15 15 C 1.53000 * 109.46769 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46912 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99923 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47093 * 90.00088 * 20 18 16 22 22 H 1.48495 * 109.46891 * 210.00496 * 20 18 16 23 23 H 1.48504 * 109.47189 * 330.00185 * 20 18 16 24 24 C 1.52943 * 109.82588 * 62.98319 * 12 11 10 25 25 C 1.53154 * 117.74706 * 359.84831 * 9 6 4 26 26 H 1.08996 * 109.47643 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46615 * 299.99958 * 1 2 3 28 28 H 1.09001 * 109.47280 * 59.99819 * 1 2 3 29 29 H 1.09006 * 109.46483 * 240.00267 * 2 1 3 30 30 H 1.09005 * 109.47039 * 120.00617 * 2 1 3 31 31 H 1.09001 * 117.50741 * 145.04236 * 8 6 4 32 32 H 1.09004 * 117.50160 * 359.97438 * 8 6 4 33 33 H 1.09005 * 109.56561 * 79.79602 * 10 9 6 34 34 H 1.09000 * 109.66464 * 319.50281 * 10 9 6 35 35 H 1.09004 * 109.47167 * 183.43995 * 11 10 9 36 36 H 1.09004 * 109.47274 * 63.43034 * 11 10 9 37 37 H 1.08997 * 109.41182 * 302.94010 * 12 11 10 38 38 H 1.00899 * 110.99995 * 278.95573 * 13 12 11 39 39 H 1.09001 * 109.46874 * 60.00179 * 14 13 12 40 40 H 1.08992 * 109.47407 * 300.00197 * 14 13 12 41 41 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 42 42 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 43 43 H 0.97000 * 119.99684 * 180.02562 * 19 18 16 44 44 H 1.08993 * 109.47692 * 57.00881 * 24 12 11 45 45 H 1.08998 * 109.47398 * 177.02478 * 24 12 11 46 46 H 1.09000 * 109.56921 * 280.19944 * 25 9 6 47 47 H 1.09001 * 109.56909 * 40.56262 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0005 6 6 3.9209 2.9372 0.0000 7 1 3.3503 3.6818 0.5551 8 6 4.6484 3.4015 -1.2637 9 6 5.4431 3.0712 0.0000 10 6 6.0563 4.2378 0.7799 11 6 7.4794 4.4825 0.2686 12 6 8.2957 3.1958 0.3989 13 7 9.6797 3.4509 -0.0224 14 6 10.6056 2.5009 0.6086 15 6 12.0337 2.7971 0.1462 16 6 12.9835 1.8222 0.7930 17 1 12.6062 1.0666 1.4661 18 6 14.3341 1.8948 0.5254 19 7 15.1629 1.0436 1.0894 20 14 14.9865 3.2013 -0.6395 21 1 15.3258 4.4254 0.1296 22 1 16.2031 2.6926 -1.3224 23 1 13.9492 3.5244 -1.6519 24 6 7.6885 2.1047 -0.4843 25 6 6.2722 1.7835 0.0030 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8900 31 1 4.5565 4.4518 -1.5404 32 1 4.7107 2.6995 -2.0953 33 1 6.0871 3.9913 1.8413 34 1 5.4554 5.1349 0.6308 35 1 7.9469 5.2709 0.8586 36 1 7.4424 4.7851 -0.7780 37 1 8.2882 2.8657 1.4376 38 1 9.7626 3.4233 -1.0276 39 1 10.3347 1.4847 0.3220 40 1 10.5461 2.6008 1.6923 41 1 12.0929 2.6969 -0.9376 42 1 12.3049 3.8133 0.4325 43 1 16.1131 1.0950 0.9014 44 1 7.6475 2.4533 -1.5162 45 1 8.3044 1.2071 -0.4281 46 1 6.3168 1.3803 1.0147 47 1 5.8139 1.0526 -0.6634 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173609316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:23 Heat of formation + Delta-G solvation = -102.010933 kcal Electronic energy + Delta-G solvation = -23760.766571 eV Core-core repulsion = 20328.564128 eV Total energy + Delta-G solvation = -3432.202444 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.96958 -40.25191 -38.19035 -37.25650 -35.51079 -34.02963 -32.64641 -31.82774 -31.28995 -27.77529 -26.19674 -25.20473 -23.82010 -23.67772 -22.35459 -22.18295 -21.30559 -19.71627 -18.96593 -18.78802 -17.63637 -17.26426 -16.77982 -16.29884 -15.98481 -15.71045 -15.49586 -15.09166 -14.96983 -14.60160 -14.54931 -14.29640 -13.86792 -13.78959 -13.45205 -13.31432 -13.19142 -13.01784 -12.89813 -12.87669 -12.80749 -12.51732 -12.13793 -11.94938 -11.84214 -11.72374 -11.63067 -11.55875 -11.42841 -11.36919 -11.01010 -10.89170 -10.77517 -10.68422 -9.21431 -8.30644 -6.35632 1.02204 1.37228 1.38970 1.51829 1.59394 2.36623 2.68316 3.04664 3.30505 3.52427 3.59565 3.72566 3.89372 3.93025 3.97230 4.05499 4.14175 4.22460 4.31655 4.39272 4.41804 4.50697 4.55595 4.58305 4.72750 4.82109 4.84786 4.87923 4.89483 4.94559 4.97796 4.99979 5.03538 5.12542 5.20432 5.24565 5.27374 5.31270 5.44682 5.46297 5.53078 5.59590 5.63413 6.19070 6.26113 6.57966 6.72701 6.73637 7.29145 8.86181 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.031535 B = 0.002465 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.685942 B =11355.424649 C =11908.657755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.486 3.514 5 O -0.532 6.532 6 C -0.166 4.166 7 H 0.160 0.840 8 C -0.123 4.123 9 C -0.089 4.089 10 C -0.074 4.074 11 C -0.094 4.094 12 C 0.086 3.914 13 N -0.686 5.686 14 C 0.088 3.912 15 C -0.003 4.003 16 C -0.536 4.536 17 H 0.028 0.972 18 C 0.002 3.998 19 N -0.952 5.952 20 Si 0.959 3.041 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.246 1.246 24 C -0.140 4.140 25 C -0.073 4.073 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.342 0.658 39 H 0.011 0.989 40 H 0.050 0.950 41 H 0.020 0.980 42 H 0.024 0.976 43 H 0.267 0.733 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.046 0.954 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.593 7.109 -5.774 33.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.332 3.668 5 O -0.422 6.422 6 C -0.185 4.185 7 H 0.177 0.823 8 C -0.160 4.160 9 C -0.089 4.089 10 C -0.112 4.112 11 C -0.132 4.132 12 C -0.024 4.024 13 N -0.316 5.316 14 C -0.041 4.041 15 C -0.041 4.041 16 C -0.574 4.574 17 H 0.046 0.954 18 C -0.195 4.195 19 N -0.592 5.592 20 Si 0.781 3.219 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.169 1.169 24 C -0.179 4.179 25 C -0.111 4.111 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.160 0.840 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.042 0.958 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -32.127 7.232 -5.280 33.351 hybrid contribution 0.722 -1.520 -0.415 1.733 sum -31.405 5.712 -5.695 32.424 Atomic orbital electron populations 1.21817 0.90286 1.04326 1.03820 1.23263 0.97174 0.79330 1.02297 1.86493 1.24023 1.33491 1.83586 1.23218 0.80507 0.91903 0.71197 1.90660 1.60390 1.44348 1.46764 1.22037 0.96073 0.92400 1.07990 0.82290 1.23303 0.98533 1.04264 0.89878 1.21643 0.88505 0.97693 1.01108 1.21192 0.95376 0.95915 0.98725 1.21395 0.93571 0.95774 1.02418 1.21646 0.87233 0.95489 0.98061 1.60674 1.04946 1.52708 1.13243 1.21613 0.92218 0.92277 0.98019 1.19434 0.92606 0.95968 0.96107 1.21423 0.92663 1.15821 1.27517 0.95384 1.26067 0.97162 0.98426 0.97802 1.70077 1.03935 1.39196 1.46001 0.85535 0.78032 0.78756 0.79532 1.19111 1.20920 1.16906 1.22226 0.96543 0.98650 1.00524 1.21209 0.93473 0.95270 1.01173 0.88405 0.91168 0.91086 0.91582 0.91724 0.84196 0.88775 0.91606 0.88304 0.91156 0.90815 0.92497 0.84039 0.97118 0.93096 0.96184 0.95803 0.92425 0.90862 0.94286 0.93543 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 71.98 0.74 -0.50 16 2 C 0.05 0.78 6.19 71.98 0.45 1.23 16 3 O -0.36 -6.60 10.22 -51.41 -0.53 -7.13 16 4 C 0.49 10.12 7.72 71.24 0.55 10.67 16 5 O -0.53 -14.39 12.83 21.97 0.28 -14.11 16 6 C -0.17 -2.51 6.03 -11.59 -0.07 -2.58 16 7 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 8 C -0.12 -1.59 9.64 30.57 0.29 -1.30 16 9 C -0.09 -1.56 1.97 -52.18 -0.10 -1.66 16 10 C -0.07 -1.14 5.67 30.70 0.17 -0.97 16 11 C -0.09 -1.86 5.53 30.63 0.17 -1.69 16 12 C 0.09 2.32 2.38 44.87 0.11 2.42 16 13 N -0.69 -22.58 6.24 -491.77 -3.07 -25.65 16 14 C 0.09 3.69 5.42 86.30 0.47 4.16 16 15 C 0.00 -0.16 4.30 29.85 0.13 -0.04 16 16 C -0.54 -32.20 9.66 25.60 0.25 -31.95 16 17 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 18 C 0.00 0.13 5.47 84.65 0.46 0.59 16 19 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 20 Si 0.96 45.51 27.47 68.60 1.88 47.40 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 24 C -0.14 -3.67 5.19 30.64 0.16 -3.51 16 25 C -0.07 -1.79 4.24 30.71 0.13 -1.66 16 26 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 1.01 8.13 -2.38 -0.02 0.99 16 30 H 0.06 1.02 8.13 -2.38 -0.02 1.00 16 31 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.10 0.97 8.10 -2.39 -0.02 0.95 16 35 H 0.07 1.47 8.14 -2.38 -0.02 1.46 16 36 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.06 1.73 7.80 -2.39 -0.02 1.71 16 38 H 0.34 10.48 8.48 -89.69 -0.76 9.72 16 39 H 0.01 0.46 7.36 -2.39 -0.02 0.45 16 40 H 0.05 2.23 8.05 -2.39 -0.02 2.21 16 41 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 42 H 0.02 1.15 7.57 -2.39 -0.02 1.13 16 43 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.04 1.20 7.36 -2.39 -0.02 1.18 16 46 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.07 2.02 5.81 -2.39 -0.01 2.00 16 Total: -1.00 -72.47 371.02 2.89 -69.58 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.12 Total: 17.64 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 3.90 Total: -26.78 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -2.77 Total: -86.60 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.24 Total: -21.24 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.40 kcal Total: -72.47 2.89 -69.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173609316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.427 kcal (2) G-P(sol) polarization free energy of solvation -72.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds