Wall clock time and date at job start Tue Mar 31 2020 08:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45208 * 109.46666 * 2 1 4 4 C 1.34232 * 116.99618 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00236 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00079 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.46862 * 300.00390 * 6 4 3 8 8 C 1.53006 * 109.47239 * 59.99547 * 6 4 3 9 9 C 1.52997 * 109.47164 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.46978 * 299.99874 * 9 8 6 11 11 H 1.08992 * 109.47056 * 300.00064 * 10 9 8 12 12 C 1.52997 * 109.46978 * 180.02562 * 10 9 8 13 13 N 1.46898 * 109.47005 * 65.00264 * 12 10 9 14 14 C 1.47477 * 111.00149 * 74.02841 * 13 12 10 15 15 C 1.53521 * 87.93507 * 138.70234 * 14 13 12 16 16 C 1.50692 * 114.17156 * 220.33068 * 15 14 13 17 17 H 1.08005 * 120.00442 * 93.83587 * 16 15 14 18 18 C 1.37874 * 120.00182 * 273.84109 * 16 15 14 19 19 N 1.31522 * 119.99768 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00531 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46822 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47227 * 119.99419 * 20 18 16 23 23 H 1.48489 * 109.47459 * 239.99840 * 20 18 16 24 24 C 1.47484 * 111.00240 * 170.00091 * 13 12 10 25 25 C 1.52996 * 109.46891 * 60.00410 * 10 9 8 26 26 C 1.52997 * 109.47466 * 179.97438 * 6 4 3 27 27 H 1.08998 * 109.46939 * 299.99720 * 1 2 3 28 28 H 1.08992 * 109.47077 * 59.99823 * 1 2 3 29 29 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47407 * 240.00533 * 2 1 3 31 31 H 1.08996 * 109.47314 * 119.99461 * 2 1 3 32 32 H 1.09001 * 109.47002 * 60.00070 * 8 6 4 33 33 H 1.09000 * 109.47050 * 300.00336 * 8 6 4 34 34 H 1.09002 * 109.47045 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47375 * 59.99966 * 9 8 6 36 36 H 1.08994 * 109.47445 * 185.00212 * 12 10 9 37 37 H 1.09000 * 109.47459 * 305.00519 * 12 10 9 38 38 H 1.09004 * 113.47795 * 253.47091 * 14 13 12 39 39 H 1.09000 * 113.47291 * 23.93650 * 14 13 12 40 40 H 1.08997 * 114.16986 * 87.61952 * 15 14 13 41 41 H 0.97005 * 119.99863 * 179.97438 * 19 18 16 42 42 H 1.09000 * 113.47347 * 336.06385 * 24 13 12 43 43 H 1.09001 * 113.47793 * 106.52925 * 24 13 12 44 44 H 1.09004 * 109.47368 * 179.97438 * 25 10 9 45 45 H 1.09001 * 109.47372 * 59.99964 * 25 10 9 46 46 H 1.09002 * 109.47153 * 59.99773 * 26 6 4 47 47 H 1.09001 * 109.46832 * 299.99964 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5843 3.4702 -0.8895 8 6 3.4497 3.6838 1.2499 9 6 4.0339 5.0978 1.2501 10 6 5.5619 5.0183 1.2492 11 1 5.8985 4.4859 2.1387 12 6 6.1462 6.4323 1.2500 13 7 5.7930 7.1072 2.5061 14 6 6.5893 6.5816 3.6306 15 6 6.7342 8.0259 4.1305 16 6 8.1042 8.3607 4.6612 17 1 8.8411 8.8079 4.0103 18 6 8.4173 8.0962 5.9776 19 7 7.5199 7.5520 6.7703 20 14 10.1158 8.5105 6.6353 21 1 10.9338 9.1104 5.5507 22 1 9.9908 9.4793 7.7539 23 1 10.7730 7.2720 7.1243 24 6 6.5307 8.3762 2.6498 25 6 6.0329 4.2721 -0.0007 26 6 5.4486 2.8575 -0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7860 3.1512 2.1395 33 1 2.3611 3.7408 1.2504 34 1 3.6987 5.6293 2.1408 35 1 3.6973 5.6303 0.3606 36 1 7.2310 6.3772 1.1597 37 1 5.7396 6.9940 0.4090 38 1 6.0190 5.9435 4.3057 39 1 7.5332 6.1324 3.3216 40 1 5.9252 8.3558 4.7823 41 1 7.7402 7.3655 7.6964 42 1 7.4589 8.4059 2.0791 43 1 5.9107 9.2590 2.4936 44 1 7.1214 4.2157 -0.0017 45 1 5.6962 4.8045 -0.8903 46 1 5.7845 2.3257 -0.8903 47 1 5.7846 2.3250 0.8896 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208997865.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:40 Heat of formation + Delta-G solvation = -85.184640 kcal Electronic energy + Delta-G solvation = -24065.093378 eV Core-core repulsion = 20633.620577 eV Total energy + Delta-G solvation = -3431.472801 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87509 -39.30713 -37.96318 -36.67853 -33.17511 -32.31660 -31.71471 -30.75359 -28.56985 -25.87227 -24.77299 -24.15508 -22.96951 -22.63335 -21.58179 -20.27625 -19.67830 -18.52766 -17.79307 -16.78486 -16.65572 -16.60000 -15.20887 -14.88598 -14.67229 -14.38400 -14.17283 -13.99264 -13.80463 -13.52600 -13.29564 -13.09819 -12.65755 -12.29550 -12.21285 -12.16703 -11.89343 -11.78590 -11.69329 -11.34813 -11.21994 -11.11853 -10.99415 -10.80467 -10.78441 -10.55438 -10.43700 -10.17559 -10.13817 -10.00948 -9.58439 -9.12469 -8.89673 -8.42829 -7.93485 -6.04773 -4.08857 2.05000 2.46554 3.27977 3.36394 3.39808 4.36913 4.40731 4.55926 4.58704 4.63609 4.67221 4.84995 4.93864 5.01704 5.11606 5.24266 5.28925 5.31939 5.37445 5.43765 5.47352 5.54407 5.57979 5.64015 5.76684 5.86891 5.94167 6.02101 6.08598 6.13439 6.16492 6.17645 6.26063 6.33848 6.42414 6.52619 6.56364 6.62822 6.71269 6.83988 7.17246 7.22941 7.59170 7.74270 7.93090 8.13195 8.39307 8.94527 9.56048 11.04829 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026078 B = 0.002665 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.449556 B =10503.058480 C =10690.202283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.466 3.534 5 O -0.510 6.510 6 C -0.077 4.077 7 H 0.107 0.893 8 C -0.111 4.111 9 C -0.102 4.102 10 C -0.084 4.084 11 H 0.073 0.927 12 C 0.027 3.973 13 N -0.482 5.482 14 C 0.006 3.994 15 C 0.040 3.960 16 C -0.515 4.515 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.284 1.284 24 C -0.006 4.006 25 C -0.112 4.112 26 C -0.101 4.101 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.034 0.966 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.261 0.739 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.386 -11.715 -15.123 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.309 3.691 5 O -0.398 6.398 6 C -0.096 4.096 7 H 0.125 0.875 8 C -0.148 4.148 9 C -0.139 4.139 10 C -0.103 4.103 11 H 0.091 0.909 12 C -0.102 4.102 13 N -0.205 5.205 14 C -0.123 4.123 15 C 0.022 3.978 16 C -0.553 4.553 17 H 0.075 0.925 18 C -0.137 4.137 19 N -0.524 5.524 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.135 4.135 25 C -0.150 4.150 26 C -0.139 4.139 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.965 -12.131 -14.953 22.669 hybrid contribution 1.869 -0.230 0.217 1.896 sum -10.096 -12.361 -14.736 21.722 Atomic orbital electron populations 1.21805 0.92596 1.02923 1.03629 1.23018 0.95422 0.80455 1.02502 1.86530 1.24805 1.32147 1.83951 1.24003 0.80365 0.92967 0.71752 1.90653 1.60449 1.43321 1.45360 1.21192 0.96947 0.89048 1.02453 0.87496 1.21583 1.00998 0.96845 0.95396 1.21462 0.94683 0.94545 1.03233 1.21134 0.95672 0.95590 0.97875 0.90895 1.22613 0.97779 0.94542 0.95300 1.68848 1.44586 1.04679 1.02351 1.23985 0.94331 1.01631 0.92307 1.20098 0.97611 0.90590 0.89551 1.21080 0.97507 1.41209 0.95516 0.92469 1.25021 0.96969 0.94787 0.96894 1.69982 1.33708 1.42571 1.06110 0.86576 0.84559 0.78114 0.78993 1.19749 1.20923 1.21010 1.23987 0.95419 0.92778 1.01283 1.21591 1.00528 0.94458 0.98466 1.21440 0.91364 0.97733 1.03329 0.91330 0.91484 0.90308 0.91396 0.91260 0.91457 0.90813 0.89782 0.92185 0.94729 0.91915 0.92015 0.93089 0.91904 0.92957 0.92986 0.92188 0.91434 0.91839 0.91357 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.52 6.19 37.16 0.23 0.75 16 3 O -0.36 -3.89 10.12 -39.26 -0.40 -4.29 16 4 C 0.47 5.62 7.26 36.00 0.26 5.88 16 5 O -0.51 -7.45 15.73 -18.75 -0.29 -7.74 16 6 C -0.08 -0.82 2.63 -91.77 -0.24 -1.06 16 7 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 8 C -0.11 -1.23 5.13 -26.73 -0.14 -1.37 16 9 C -0.10 -1.27 5.09 -26.73 -0.14 -1.41 16 10 C -0.08 -1.15 2.23 -90.62 -0.20 -1.35 16 11 H 0.07 1.14 7.55 -51.93 -0.39 0.75 16 12 C 0.03 0.43 4.21 -3.83 -0.02 0.41 16 13 N -0.48 -9.36 5.87 -244.62 -1.44 -10.80 16 14 C 0.01 0.14 6.50 -7.54 -0.05 0.10 16 15 C 0.04 1.01 3.77 -91.24 -0.34 0.66 16 16 C -0.51 -13.98 8.82 -34.45 -0.30 -14.29 16 17 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 18 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 19 N -0.89 -25.54 13.26 55.43 0.74 -24.81 16 20 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 C -0.01 -0.12 7.27 -7.54 -0.05 -0.18 16 25 C -0.11 -1.27 5.21 -26.71 -0.14 -1.41 16 26 C -0.10 -1.13 4.50 -26.71 -0.12 -1.25 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 31 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 34 H 0.08 1.22 7.75 -51.93 -0.40 0.82 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.58 7.56 -51.93 -0.39 0.18 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.05 1.17 7.66 -51.93 -0.40 0.77 16 40 H 0.06 1.72 8.11 -51.93 -0.42 1.30 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 42 H 0.05 1.07 7.72 -51.93 -0.40 0.67 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 47 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -29.54 373.02 -10.47 -40.01 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -8.71 Total: -0.72 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.97 Total: -13.32 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.70 Total: -35.61 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.69 Total: -12.03 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.54 -10.47 -40.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208997865.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.177 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds