Wall clock time and date at job start Tue Mar 31 2020 08:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45208 * 109.46666 * 2 1 4 4 C 1.34232 * 116.99618 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00236 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00079 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.46862 * 300.00390 * 6 4 3 8 8 C 1.53006 * 109.47239 * 59.99547 * 6 4 3 9 9 C 1.52997 * 109.47164 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.46978 * 299.99874 * 9 8 6 11 11 H 1.08992 * 109.47056 * 300.00064 * 10 9 8 12 12 C 1.52997 * 109.46978 * 180.02562 * 10 9 8 13 13 N 1.46898 * 109.47005 * 65.00264 * 12 10 9 14 14 C 1.47477 * 111.00149 * 74.02841 * 13 12 10 15 15 C 1.53521 * 87.93507 * 138.70234 * 14 13 12 16 16 C 1.50692 * 114.17156 * 220.33068 * 15 14 13 17 17 H 1.08005 * 120.00442 * 93.83587 * 16 15 14 18 18 C 1.37874 * 120.00182 * 273.84109 * 16 15 14 19 19 N 1.31522 * 119.99768 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00531 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46822 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47227 * 119.99419 * 20 18 16 23 23 H 1.48489 * 109.47459 * 239.99840 * 20 18 16 24 24 C 1.47484 * 111.00240 * 170.00091 * 13 12 10 25 25 C 1.52996 * 109.46891 * 60.00410 * 10 9 8 26 26 C 1.52997 * 109.47466 * 179.97438 * 6 4 3 27 27 H 1.08998 * 109.46939 * 299.99720 * 1 2 3 28 28 H 1.08992 * 109.47077 * 59.99823 * 1 2 3 29 29 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47407 * 240.00533 * 2 1 3 31 31 H 1.08996 * 109.47314 * 119.99461 * 2 1 3 32 32 H 1.09001 * 109.47002 * 60.00070 * 8 6 4 33 33 H 1.09000 * 109.47050 * 300.00336 * 8 6 4 34 34 H 1.09002 * 109.47045 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47375 * 59.99966 * 9 8 6 36 36 H 1.08994 * 109.47445 * 185.00212 * 12 10 9 37 37 H 1.09000 * 109.47459 * 305.00519 * 12 10 9 38 38 H 1.09004 * 113.47795 * 253.47091 * 14 13 12 39 39 H 1.09000 * 113.47291 * 23.93650 * 14 13 12 40 40 H 1.08997 * 114.16986 * 87.61952 * 15 14 13 41 41 H 0.97005 * 119.99863 * 179.97438 * 19 18 16 42 42 H 1.09000 * 113.47347 * 336.06385 * 24 13 12 43 43 H 1.09001 * 113.47793 * 106.52925 * 24 13 12 44 44 H 1.09004 * 109.47368 * 179.97438 * 25 10 9 45 45 H 1.09001 * 109.47372 * 59.99964 * 25 10 9 46 46 H 1.09002 * 109.47153 * 59.99773 * 26 6 4 47 47 H 1.09001 * 109.46832 * 299.99964 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5843 3.4702 -0.8895 8 6 3.4497 3.6838 1.2499 9 6 4.0339 5.0978 1.2501 10 6 5.5619 5.0183 1.2492 11 1 5.8985 4.4859 2.1387 12 6 6.1462 6.4323 1.2500 13 7 5.7930 7.1072 2.5061 14 6 6.5893 6.5816 3.6306 15 6 6.7342 8.0259 4.1305 16 6 8.1042 8.3607 4.6612 17 1 8.8411 8.8079 4.0103 18 6 8.4173 8.0962 5.9776 19 7 7.5199 7.5520 6.7703 20 14 10.1158 8.5105 6.6353 21 1 10.9338 9.1104 5.5507 22 1 9.9908 9.4793 7.7539 23 1 10.7730 7.2720 7.1243 24 6 6.5307 8.3762 2.6498 25 6 6.0329 4.2721 -0.0007 26 6 5.4486 2.8575 -0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7860 3.1512 2.1395 33 1 2.3611 3.7408 1.2504 34 1 3.6987 5.6293 2.1408 35 1 3.6973 5.6303 0.3606 36 1 7.2310 6.3772 1.1597 37 1 5.7396 6.9940 0.4090 38 1 6.0190 5.9435 4.3057 39 1 7.5332 6.1324 3.3216 40 1 5.9252 8.3558 4.7823 41 1 7.7402 7.3655 7.6964 42 1 7.4589 8.4059 2.0791 43 1 5.9107 9.2590 2.4936 44 1 7.1214 4.2157 -0.0017 45 1 5.6962 4.8045 -0.8903 46 1 5.7845 2.3257 -0.8903 47 1 5.7846 2.3250 0.8896 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208997865.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:39 Heat of formation + Delta-G solvation = -101.505038 kcal Electronic energy + Delta-G solvation = -24065.801083 eV Core-core repulsion = 20633.620577 eV Total energy + Delta-G solvation = -3432.180506 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.80695 -40.82176 -39.10245 -37.63182 -34.88457 -33.68767 -32.51549 -31.68823 -30.11814 -27.47184 -26.53673 -25.39486 -23.95530 -23.59312 -22.73784 -21.36840 -20.70010 -20.32925 -18.71381 -18.61910 -17.61730 -17.55147 -16.71702 -16.37073 -16.18463 -15.76292 -15.25562 -15.16171 -14.78665 -14.73115 -14.44209 -14.02387 -13.70171 -13.68515 -13.32365 -13.20078 -13.12410 -12.97033 -12.91118 -12.86677 -12.53518 -12.44408 -12.30784 -12.20571 -12.03018 -11.73880 -11.54880 -11.48965 -11.35898 -11.21280 -11.00158 -10.90186 -10.75152 -10.48637 -9.60616 -8.15270 -6.26168 1.11754 1.40757 1.42584 1.54098 1.66685 2.42053 3.14195 3.34810 3.52143 3.66088 3.74240 3.93952 3.98743 4.06891 4.11435 4.22579 4.30515 4.34266 4.37028 4.45207 4.50083 4.56344 4.58535 4.59543 4.77462 4.82618 4.84866 4.91117 4.91909 4.95749 5.01389 5.04622 5.11379 5.13352 5.15319 5.23546 5.26107 5.31905 5.44680 5.51473 5.56554 5.63907 5.65146 5.86798 6.31488 6.46900 6.68787 6.83690 7.42210 8.94617 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026078 B = 0.002665 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.449556 B =10503.058480 C =10690.202283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.359 6.359 4 C 0.467 3.533 5 O -0.541 6.541 6 C -0.072 4.072 7 H 0.135 0.865 8 C -0.104 4.104 9 C -0.096 4.096 10 C -0.081 4.081 11 H 0.045 0.955 12 C 0.026 3.974 13 N -0.475 5.475 14 C 0.021 3.979 15 C 0.019 3.981 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.013 3.987 19 N -0.923 5.923 20 Si 0.957 3.043 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.281 1.281 24 C 0.009 3.991 25 C -0.103 4.103 26 C -0.097 4.097 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.030 0.970 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.044 0.956 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.656 -11.570 -17.318 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.312 3.688 5 O -0.431 6.431 6 C -0.091 4.091 7 H 0.153 0.847 8 C -0.141 4.141 9 C -0.133 4.133 10 C -0.100 4.100 11 H 0.063 0.937 12 C -0.102 4.102 13 N -0.197 5.197 14 C -0.108 4.108 15 C 0.000 4.000 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.782 3.218 21 H -0.188 1.188 22 H -0.205 1.205 23 H -0.207 1.207 24 C -0.120 4.120 25 C -0.141 4.141 26 C -0.135 4.135 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.106 0.894 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.251 -11.975 -17.164 24.251 hybrid contribution 1.883 -0.300 0.886 2.102 sum -10.368 -12.275 -16.278 22.873 Atomic orbital electron populations 1.21821 0.90393 1.04335 1.03767 1.23282 0.97159 0.79428 1.02366 1.86529 1.24075 1.33497 1.83474 1.24261 0.80587 0.93122 0.70837 1.90642 1.61170 1.44378 1.46938 1.21205 0.96341 0.88427 1.03108 0.84700 1.21487 1.01661 0.95873 0.95095 1.21384 0.93640 0.95251 1.03049 1.21094 0.96556 0.94181 0.98172 0.93692 1.22717 0.97854 0.95762 0.93896 1.68786 1.43703 1.03968 1.03228 1.23663 0.94132 0.99751 0.93293 1.20060 0.95725 0.92643 0.91575 1.21417 0.98431 1.40878 0.95923 0.92348 1.25841 1.00765 0.94752 0.97288 1.70107 1.35758 1.43856 1.06418 0.85523 0.79956 0.77868 0.78425 1.18758 1.20525 1.20739 1.23814 0.96159 0.93937 0.98103 1.21515 1.00508 0.94212 0.97847 1.21379 0.91948 0.97491 1.02693 0.91491 0.90975 0.88283 0.91155 0.91881 0.93266 0.89517 0.92200 0.90029 0.95213 0.89447 0.94025 0.93750 0.95279 0.92914 0.92286 0.90787 0.91522 0.89406 0.90564 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 71.98 0.74 -0.75 16 2 C 0.05 0.83 6.19 71.98 0.45 1.28 16 3 O -0.36 -7.33 10.12 -51.44 -0.52 -7.85 16 4 C 0.47 10.75 7.26 71.23 0.52 11.27 16 5 O -0.54 -15.62 15.73 21.97 0.35 -15.27 16 6 C -0.07 -1.38 2.63 -11.54 -0.03 -1.41 16 7 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 8 C -0.10 -2.17 5.13 30.60 0.16 -2.01 16 9 C -0.10 -2.24 5.09 30.59 0.16 -2.08 16 10 C -0.08 -2.13 2.23 -10.80 -0.02 -2.15 16 11 H 0.04 1.43 7.55 -2.39 -0.02 1.41 16 12 C 0.03 0.79 4.21 86.30 0.36 1.16 16 13 N -0.47 -18.21 5.87 -927.85 -5.44 -23.66 16 14 C 0.02 0.97 6.50 83.58 0.54 1.52 16 15 C 0.02 0.97 3.77 -11.20 -0.04 0.93 16 16 C -0.53 -29.04 8.82 25.60 0.23 -28.82 16 17 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 18 C 0.01 0.71 5.46 84.65 0.46 1.17 16 19 N -0.92 -54.57 13.26 21.45 0.28 -54.29 16 20 Si 0.96 43.50 29.54 68.60 2.03 45.52 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 C 0.01 0.35 7.27 83.57 0.61 0.96 16 25 C -0.10 -2.09 5.21 30.61 0.16 -1.93 16 26 C -0.10 -2.04 4.50 30.61 0.14 -1.90 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 31 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.61 8.11 -2.39 -0.02 1.59 16 34 H 0.06 1.71 7.75 -2.39 -0.02 1.69 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.03 0.94 7.56 -2.39 -0.02 0.92 16 37 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.04 2.08 7.66 -2.39 -0.02 2.07 16 40 H 0.03 1.66 8.11 -2.39 -0.02 1.64 16 41 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 42 H 0.06 2.34 7.72 -2.39 -0.02 2.32 16 43 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 47 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 Total: -1.00 -64.81 373.02 2.02 -62.80 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.91 Total: 15.53 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 4.42 Total: -22.78 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -5.16 Total: -77.94 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.18 Total: -23.12 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -64.81 2.02 -62.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208997865.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.708 kcal (2) G-P(sol) polarization free energy of solvation -64.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds