Wall clock time and date at job start Tue Mar 31 2020 08:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48605 * 111.00234 * 2 1 4 4 H 1.09005 * 112.07210 * 41.73618 * 3 2 1 5 5 C 1.54466 * 104.52011 * 280.17029 * 3 2 1 6 6 C 1.54224 * 105.06112 * 336.01821 * 5 3 2 7 7 H 1.08997 * 110.40508 * 118.93893 * 6 5 3 8 8 O 1.42898 * 110.32620 * 241.10202 * 6 5 3 9 9 C 1.42897 * 113.99959 * 265.64398 * 8 6 5 10 10 C 1.52996 * 109.47256 * 179.97438 * 9 8 6 11 11 C 1.52993 * 109.47476 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.47481 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46997 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46573 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00167 * 359.72054 * 14 13 12 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47405 * 60.00219 * 18 16 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47399 * 299.99813 * 18 16 14 22 22 C 1.48618 * 110.99743 * 244.63439 * 2 1 3 23 23 H 1.09002 * 112.06723 * 318.27394 * 22 2 1 24 24 C 1.53892 * 107.90326 * 194.54570 * 22 2 1 25 25 C 1.52672 * 107.18926 * 302.22419 * 24 22 2 26 26 O 1.20759 * 120.68209 * 225.15735 * 25 24 22 27 27 C 1.51531 * 118.31672 * 45.01922 * 25 24 22 28 28 H 1.08998 * 109.47269 * 175.36662 * 1 2 3 29 29 H 1.09011 * 109.46756 * 295.36606 * 1 2 3 30 30 H 1.08994 * 109.47198 * 55.36088 * 1 2 3 31 31 H 1.08997 * 110.32208 * 217.12870 * 5 3 2 32 32 H 1.08995 * 110.32784 * 94.91133 * 5 3 2 33 33 H 1.09000 * 109.47424 * 59.99814 * 9 8 6 34 34 H 1.09004 * 109.46905 * 299.99705 * 9 8 6 35 35 H 1.09004 * 109.47368 * 59.99707 * 10 9 8 36 36 H 1.08996 * 109.47261 * 300.00091 * 10 9 8 37 37 H 1.09000 * 109.46925 * 60.00213 * 11 10 9 38 38 H 1.08996 * 109.47340 * 300.00521 * 11 10 9 39 39 H 1.09000 * 109.46866 * 60.00179 * 12 11 10 40 40 H 1.09001 * 109.46611 * 300.00296 * 12 11 10 41 41 H 1.09000 * 109.47486 * 60.00167 * 13 12 11 42 42 H 1.09001 * 109.47362 * 299.99445 * 13 12 11 43 43 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 44 44 H 1.08999 * 109.80183 * 61.17122 * 24 22 2 45 45 H 1.09005 * 109.80410 * 182.03846 * 24 22 2 46 46 H 1.08995 * 109.80369 * 195.04953 * 27 25 24 47 47 H 1.09005 * 109.84364 * 74.21723 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0016 1.3873 0.0000 4 1 1.4447 2.0399 0.6725 5 6 1.8939 1.8435 -1.4718 6 6 1.8938 0.5402 -2.2964 7 1 0.9665 0.4481 -2.8616 8 8 3.0172 0.5112 -3.1791 9 6 2.7355 0.9943 -4.4942 10 6 4.0029 0.9182 -5.3478 11 6 3.7013 1.4347 -6.7559 12 6 4.9690 1.3593 -7.6094 13 6 4.6673 1.8765 -9.0174 14 6 5.9158 1.8015 -9.8581 15 1 6.8337 1.4271 -9.4296 16 6 5.8874 2.2158 -11.1729 17 7 4.7710 2.6769 -11.6931 18 14 7.4347 2.1222 -12.2152 19 1 7.8945 0.7125 -12.2932 20 1 7.1420 2.6243 -13.5818 21 1 8.4978 2.9562 -11.5991 22 6 2.0015 -0.5944 -1.2537 23 1 1.4444 -1.4814 -1.5553 24 6 3.4944 -0.8983 -1.0363 25 6 4.1723 0.4165 -0.6589 26 8 5.2203 0.7372 -1.1658 27 6 3.4950 1.3069 0.3633 28 1 -0.3634 -1.0243 -0.0830 29 1 -0.3633 0.4403 0.9287 30 1 -0.3633 0.5841 -0.8455 31 1 2.7509 2.4612 -1.7404 32 1 0.9658 2.3923 -1.6312 33 1 2.3982 2.0292 -4.4367 34 1 1.9551 0.3823 -4.9466 35 1 4.3407 -0.1166 -5.4054 36 1 4.7831 1.5303 -4.8952 37 1 3.3634 2.4695 -6.6987 38 1 2.9213 0.8224 -7.2082 39 1 5.3073 0.3247 -7.6667 40 1 5.7486 1.9720 -7.1568 41 1 4.3292 2.9111 -8.9598 42 1 3.8876 1.2640 -9.4702 43 1 4.7511 2.9687 -12.6179 44 1 3.6107 -1.6154 -0.2237 45 1 3.9260 -1.3034 -1.9517 46 1 3.9361 2.3032 0.3352 47 1 3.6102 0.8802 1.3597 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224370274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:34 Heat of formation + Delta-G solvation = -96.525947 kcal Electronic energy + Delta-G solvation = -24143.220146 eV Core-core repulsion = 20711.255549 eV Total energy + Delta-G solvation = -3431.964597 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.45840 -38.48610 -37.53236 -35.19458 -32.88696 -32.31271 -31.85298 -30.57825 -29.52997 -26.40733 -25.77741 -24.91450 -23.40481 -21.85710 -21.09637 -20.88027 -19.98247 -18.77955 -17.29259 -16.84964 -16.14314 -15.79244 -15.56634 -15.45433 -14.94171 -14.61471 -14.48153 -14.43999 -14.10128 -13.76688 -13.39774 -13.19741 -12.77565 -12.74088 -12.59922 -12.27320 -11.98925 -11.93676 -11.60088 -11.50189 -11.46965 -11.37107 -11.09782 -10.89033 -10.78940 -10.46267 -10.42220 -10.34790 -9.71818 -9.59644 -9.50840 -9.22871 -9.07794 -8.97130 -8.30034 -5.95508 -3.97445 1.97720 3.28956 3.36690 3.40283 3.43429 3.46521 3.84149 4.12716 4.35349 4.38214 4.49948 4.54672 4.69281 4.76806 4.87027 4.88359 5.01057 5.11788 5.13440 5.18530 5.30284 5.35006 5.39997 5.41274 5.43108 5.48959 5.50854 5.65185 5.66690 5.75091 5.78363 5.88918 6.10961 6.23997 6.32445 6.44396 6.46454 6.54796 6.85573 6.99396 7.11768 7.21944 7.50593 7.73275 7.89110 8.05570 8.49100 9.09872 9.66274 11.15929 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.032631 B = 0.002361 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.885700 B =11857.904722 C =12273.402741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.506 5.506 3 C 0.073 3.927 4 H 0.104 0.896 5 C -0.183 4.183 6 C 0.053 3.947 7 H 0.070 0.930 8 O -0.368 6.368 9 C 0.063 3.937 10 C -0.115 4.115 11 C -0.115 4.115 12 C -0.109 4.109 13 C 0.020 3.980 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.072 3.928 23 H 0.107 0.893 24 C -0.144 4.144 25 C 0.369 3.631 26 O -0.447 6.447 27 C -0.157 4.157 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.014 0.986 42 H 0.014 0.986 43 H 0.260 0.740 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.716 -5.452 28.165 30.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.229 5.229 3 C -0.035 4.035 4 H 0.122 0.878 5 C -0.222 4.222 6 C -0.007 4.007 7 H 0.088 0.912 8 O -0.286 6.286 9 C -0.014 4.014 10 C -0.153 4.153 11 C -0.152 4.152 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.037 4.037 23 H 0.125 0.875 24 C -0.182 4.182 25 C 0.243 3.757 26 O -0.318 6.318 27 C -0.195 4.195 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.109 0.891 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.888 -5.579 28.259 30.794 hybrid contribution -0.014 0.632 -1.490 1.619 sum -10.902 -4.948 26.768 29.324 Atomic orbital electron populations 1.22518 0.87403 1.02417 1.01417 1.65268 1.08615 1.15160 1.33841 1.22895 0.94815 0.90017 0.95815 0.87751 1.23517 1.03809 0.98783 0.96122 1.23466 0.90603 0.94522 0.92132 0.91227 1.88029 1.33260 1.85252 1.22039 1.22706 0.98822 0.97704 0.82138 1.21578 0.96193 1.02536 0.94977 1.21582 0.99990 1.00487 0.93187 1.21612 0.94996 1.00426 0.97672 1.19104 0.96778 0.96157 0.89624 1.21269 0.96461 1.42071 0.96000 0.92758 1.25036 0.96092 0.95388 0.98046 1.69958 1.26107 1.43399 1.14273 0.86659 0.83592 0.78424 0.79335 1.20237 1.21319 1.20246 1.23067 0.96013 0.97051 0.87571 0.87500 1.22468 0.94345 0.97333 1.04029 1.24911 0.84228 0.87393 0.79191 1.90421 1.21819 1.72693 1.46898 1.22529 0.95044 1.01295 1.00643 0.90889 0.90866 0.94940 0.89323 0.90606 0.93630 0.93426 0.91439 0.91368 0.92549 0.92509 0.93390 0.93395 0.96753 0.96728 0.93022 0.88338 0.87924 0.89060 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.41 60.06 0.57 0.62 16 2 N -0.51 -3.38 5.21 -221.22 -1.15 -4.54 16 3 C 0.07 0.50 3.62 -65.53 -0.24 0.26 16 4 H 0.10 0.53 8.07 -51.93 -0.42 0.11 16 5 C -0.18 -1.51 5.27 -25.32 -0.13 -1.65 16 6 C 0.05 0.49 2.60 -25.32 -0.07 0.42 16 7 H 0.07 0.58 7.81 -51.93 -0.41 0.18 16 8 O -0.37 -4.57 7.56 -35.23 -0.27 -4.84 16 9 C 0.06 0.80 5.78 37.16 0.21 1.01 16 10 C -0.12 -1.75 5.58 -26.74 -0.15 -1.90 16 11 C -0.11 -2.01 5.21 -26.73 -0.14 -2.15 16 12 C -0.11 -2.36 5.15 -26.73 -0.14 -2.50 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 18 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.07 0.56 3.55 -65.53 -0.23 0.33 16 23 H 0.11 0.70 8.07 -51.93 -0.42 0.28 16 24 C -0.14 -1.32 5.52 -26.44 -0.15 -1.47 16 25 C 0.37 4.10 4.84 -27.64 -0.13 3.96 16 26 O -0.45 -6.90 17.89 6.00 0.11 -6.79 16 27 C -0.16 -1.24 5.77 -27.00 -0.16 -1.40 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.03 0.16 7.17 -51.93 -0.37 -0.21 16 31 H 0.09 0.91 7.55 -51.93 -0.39 0.52 16 32 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.10 1.09 7.57 -51.93 -0.39 0.70 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -33.28 369.15 -10.04 -43.32 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -8.70 Total: -4.90 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -1.30 Total: -18.10 kcal Atomic # 7 Polarization: -31.05 SS G_CDS: -0.42 Total: -31.47 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.16 Total: -11.63 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.28 -10.04 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.206 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds