Wall clock time and date at job start Tue Mar 31 2020 08:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99683 * 2 1 4 4 C 1.39240 * 120.00170 * 180.02562 * 2 1 3 5 5 C 1.39604 * 121.06936 * 354.55558 * 4 2 1 6 6 N 1.31654 * 119.83576 * 179.72298 * 5 4 2 7 7 N 1.28305 * 122.33910 * 0.02562 * 6 5 4 8 8 C 1.32453 * 122.31442 * 359.97438 * 7 6 5 9 9 O 1.35705 * 120.08681 * 180.02562 * 8 7 6 10 10 C 1.42897 * 117.00537 * 0.02562 * 9 8 7 11 11 H 1.09004 * 109.46626 * 30.00161 * 10 9 8 12 12 C 1.50697 * 109.47304 * 270.00533 * 10 9 8 13 13 H 1.07995 * 119.99910 * 120.00135 * 12 10 9 14 14 C 1.37877 * 119.99625 * 299.99013 * 12 10 9 15 15 N 1.31506 * 120.00182 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 119.99603 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47081 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46964 * 120.00569 * 16 14 12 19 19 H 1.48509 * 109.46657 * 240.00349 * 16 14 12 20 20 C 1.52997 * 109.47118 * 149.99671 * 10 9 8 21 21 N 1.46899 * 109.47421 * 292.86767 * 20 10 9 22 22 C 1.46903 * 109.46968 * 63.50704 * 21 20 10 23 23 C 1.46904 * 109.46963 * 183.50445 * 21 20 10 24 24 C 1.46894 * 109.47537 * 303.50736 * 21 20 10 25 25 C 1.38953 * 119.82177 * 0.02562 * 8 7 6 26 26 H 1.09002 * 109.46961 * 269.99957 * 1 2 3 27 27 H 1.08992 * 109.47201 * 29.99998 * 1 2 3 28 28 H 1.09001 * 109.47190 * 150.00414 * 1 2 3 29 29 H 1.09000 * 109.47025 * 185.05364 * 3 2 1 30 30 H 1.09006 * 109.47295 * 305.04854 * 3 2 1 31 31 H 1.08996 * 109.47099 * 65.04943 * 3 2 1 32 32 H 1.07999 * 120.08477 * 359.70331 * 5 4 2 33 33 H 0.97007 * 120.00091 * 179.97438 * 15 14 12 34 34 H 1.08996 * 109.46858 * 52.87186 * 20 10 9 35 35 H 1.08997 * 109.47091 * 172.86771 * 20 10 9 36 36 H 1.09001 * 109.47046 * 49.17406 * 22 21 20 37 37 H 1.08997 * 109.46937 * 169.17557 * 22 21 20 38 38 H 1.08998 * 109.47082 * 289.17976 * 22 21 20 39 39 H 1.08999 * 109.47182 * 60.00253 * 23 21 20 40 40 H 1.09000 * 109.47000 * 180.02562 * 23 21 20 41 41 H 1.09002 * 109.47052 * 300.00227 * 23 21 20 42 42 H 1.09004 * 109.47240 * 59.99364 * 24 21 20 43 43 H 1.08998 * 109.47598 * 179.97438 * 24 21 20 44 44 H 1.09006 * 109.47197 * 300.00091 * 24 21 20 45 45 H 1.07994 * 121.08480 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1613 -1.2058 -0.0005 5 6 1.4906 -2.4250 0.1124 6 7 2.1728 -3.5510 0.1037 7 7 3.4509 -3.5784 -0.0055 8 6 4.1757 -2.4755 -0.1179 9 8 5.5255 -2.5572 -0.2314 10 6 6.0994 -3.8658 -0.2231 11 1 5.3894 -4.5765 -0.6463 12 6 6.4237 -4.2632 1.1939 13 1 5.9651 -5.1395 1.6273 14 6 7.3062 -3.5079 1.9368 15 7 7.8644 -2.4406 1.4090 16 14 7.7088 -4.0009 3.6930 17 1 6.9554 -5.2306 4.0470 18 1 9.1658 -4.2619 3.8123 19 1 7.3255 -2.9021 4.6157 20 6 7.3808 -3.8660 -1.0590 21 7 7.0439 -3.6469 -2.4720 22 6 6.4399 -2.3172 -2.6308 23 6 8.2645 -3.7306 -3.2851 24 6 6.0904 -4.6736 -2.9130 25 6 3.5502 -1.2347 -0.1192 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 3.2657 1.0716 -0.0905 30 1 1.8680 1.8785 -0.8413 31 1 2.0037 1.8001 0.9317 32 1 0.4150 -2.4445 0.2069 33 1 8.4850 -1.9090 1.9318 34 1 8.0393 -3.0687 -0.7146 35 1 7.8852 -4.8261 -0.9505 36 1 7.0611 -1.5740 -2.1310 37 1 6.3666 -2.0758 -3.6912 38 1 5.4439 -2.3153 -2.1880 39 1 8.7126 -4.7172 -3.1672 40 1 8.0146 -3.5676 -4.3334 41 1 8.9720 -2.9687 -2.9578 42 1 5.1847 -4.6116 -2.3096 43 1 5.8400 -4.5108 -3.9612 44 1 6.5385 -5.6603 -2.7951 45 1 4.1212 -0.3226 -0.2101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229220041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:45 Heat of formation + Delta-G solvation = 146.827872 kcal Electronic energy + Delta-G solvation = -25671.222240 eV Core-core repulsion = 22230.332836 eV Total energy + Delta-G solvation = -3440.889404 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.32898 -41.68801 -39.10409 -37.96435 -34.80474 -32.74532 -32.10287 -31.27550 -30.33350 -30.23400 -29.40410 -27.79253 -26.67668 -25.01260 -24.65562 -23.31760 -22.07862 -19.48856 -18.98076 -18.64837 -18.43874 -18.09792 -17.58222 -17.18341 -16.54557 -16.33778 -16.03432 -15.74829 -15.50155 -14.95618 -14.92633 -14.59131 -14.41849 -14.30644 -14.13404 -13.97536 -13.91017 -13.73995 -13.63164 -13.50771 -13.30584 -12.88625 -12.73554 -12.57604 -12.14821 -11.82151 -11.74067 -11.65540 -11.22402 -10.92389 -10.20120 -10.07854 -9.47370 -8.73128 -7.73719 -5.90416 0.32436 0.33550 0.57814 1.83006 2.12782 2.27036 2.30576 2.32119 2.35344 2.40127 2.59882 3.03454 3.09184 3.17950 3.23417 3.44544 3.53814 3.58380 3.65599 3.68298 3.75639 3.76932 3.80319 3.88506 3.92261 4.00494 4.10328 4.17738 4.18479 4.26833 4.39730 4.48603 4.52084 4.60315 4.64863 4.69590 4.92892 5.09625 5.22760 5.32231 5.96956 6.16338 6.25848 6.31608 6.73741 7.31152 7.92274 8.26925 9.29807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.617 5.617 3 C 0.083 3.917 4 C 0.239 3.761 5 C -0.062 4.062 6 N -0.173 5.173 7 N -0.342 5.342 8 C 0.320 3.680 9 O -0.291 6.291 10 C 0.193 3.807 11 H 0.069 0.931 12 C -0.545 4.545 13 H 0.081 0.919 14 C 0.086 3.914 15 N -0.869 5.869 16 Si 0.903 3.097 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.276 1.276 20 C -0.004 4.004 21 N -0.273 5.273 22 C -0.038 4.038 23 C -0.040 4.040 24 C -0.049 4.049 25 C -0.254 4.254 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.165 0.835 33 H 0.277 0.723 34 H 0.158 0.842 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 2.560 -16.596 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.327 5.327 3 C -0.060 4.060 4 C 0.124 3.876 5 C -0.236 4.236 6 N -0.015 5.015 7 N -0.203 5.203 8 C 0.137 3.863 9 O -0.195 6.195 10 C 0.139 3.861 11 H 0.087 0.913 12 C -0.582 4.582 13 H 0.100 0.900 14 C -0.122 4.122 15 N -0.504 5.504 16 Si 0.729 3.271 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.201 1.201 20 C -0.122 4.122 21 N 0.068 4.932 22 C -0.179 4.179 23 C -0.182 4.182 24 C -0.191 4.191 25 C -0.288 4.288 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.182 0.818 33 H 0.087 0.913 34 H 0.175 0.825 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.118 0.882 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.127 0.873 44 H 0.136 0.864 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.322 1.454 -16.524 16.591 hybrid contribution 0.229 1.537 1.172 1.946 sum -0.093 2.992 -15.353 15.642 Atomic orbital electron populations 1.21787 0.78275 1.03350 1.02172 1.46342 1.05700 1.02971 1.77723 1.21847 0.97895 0.84358 1.01895 1.18673 0.91231 0.87335 0.90363 1.23796 1.02029 0.88124 1.09638 1.72578 1.00533 1.24542 1.03826 1.72981 1.00070 1.24980 1.22256 1.21073 0.86625 0.90406 0.88146 1.86498 1.13227 1.35714 1.84096 1.20355 0.88012 0.80558 0.97210 0.91345 1.21278 1.27470 1.13636 0.95766 0.90050 1.25091 0.93815 0.93504 0.99816 1.69624 1.27839 1.14608 1.38285 0.86289 0.78777 0.79696 0.82361 1.18880 1.20020 1.20120 1.24954 1.05220 1.09264 0.72767 1.46415 1.14289 1.14808 1.17663 1.24218 1.05105 0.82870 1.05730 1.23998 0.87539 1.08578 0.98045 1.24114 0.96797 0.93456 1.04725 1.20815 0.92514 0.98300 1.17209 0.92424 0.90711 0.90774 0.90031 0.91840 0.92086 0.81837 0.91329 0.82478 0.85700 0.85949 0.88160 0.86055 0.86742 0.87274 0.86528 0.85941 0.87282 0.86409 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.21 10.15 59.85 0.61 0.39 16 2 N -0.62 0.10 3.40 -187.30 -0.64 -0.53 16 3 C 0.08 -0.15 10.64 59.85 0.64 0.48 16 4 C 0.24 0.52 6.57 -83.54 -0.55 -0.03 16 5 C -0.06 -0.19 10.46 -17.12 -0.18 -0.36 16 6 N -0.17 -0.99 11.48 30.71 0.35 -0.64 16 7 N -0.34 -2.02 9.83 30.46 0.30 -1.72 16 8 C 0.32 1.40 6.66 -17.02 -0.11 1.28 16 9 O -0.29 -1.00 6.39 -18.82 -0.12 -1.12 16 10 C 0.19 0.50 1.64 -27.89 -0.05 0.46 16 11 H 0.07 0.12 4.70 -51.93 -0.24 -0.12 16 12 C -0.54 -4.63 8.90 -34.44 -0.31 -4.94 16 13 H 0.08 0.86 7.81 -52.49 -0.41 0.45 16 14 C 0.09 0.84 5.24 -17.82 -0.09 0.75 16 15 N -0.87 -7.94 10.96 55.43 0.61 -7.34 16 16 Si 0.90 8.97 29.54 -169.99 -5.02 3.95 16 17 H -0.26 -2.85 7.11 56.52 0.40 -2.45 16 18 H -0.27 -2.75 7.11 56.52 0.40 -2.35 16 19 H -0.28 -3.14 7.11 56.52 0.40 -2.74 16 20 C 0.00 0.01 3.49 -3.83 -0.01 0.00 16 21 N -0.27 2.40 0.05 -395.63 -0.02 2.38 16 22 C -0.04 0.30 7.09 60.07 0.43 0.73 16 23 C -0.04 0.47 7.99 60.07 0.48 0.95 16 24 C -0.05 0.47 7.56 60.06 0.45 0.92 16 25 C -0.25 -0.71 9.39 -38.87 -0.36 -1.08 16 26 H 0.06 -0.14 8.14 -51.93 -0.42 -0.56 16 27 H 0.07 -0.29 8.07 -51.93 -0.42 -0.71 16 28 H 0.07 -0.23 6.51 -51.93 -0.34 -0.57 16 29 H 0.08 -0.15 5.43 -51.93 -0.28 -0.43 16 30 H 0.06 -0.21 8.14 -51.93 -0.42 -0.64 16 31 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 16 32 H 0.16 0.06 6.43 -52.49 -0.34 -0.28 16 33 H 0.28 2.67 8.31 -40.82 -0.34 2.33 16 34 H 0.16 -0.06 6.14 -51.93 -0.32 -0.38 16 35 H 0.12 -0.48 8.10 -51.93 -0.42 -0.90 16 36 H 0.12 -0.83 7.92 -51.93 -0.41 -1.24 16 37 H 0.10 -1.12 7.97 -51.93 -0.41 -1.53 16 38 H 0.12 -0.63 5.04 -51.93 -0.26 -0.89 16 39 H 0.11 -1.43 8.13 -51.93 -0.42 -1.85 16 40 H 0.11 -1.50 8.06 -51.93 -0.42 -1.92 16 41 H 0.12 -1.33 8.14 -51.93 -0.42 -1.75 16 42 H 0.12 -0.80 5.85 -51.93 -0.30 -1.10 16 43 H 0.11 -1.32 8.14 -51.93 -0.42 -1.74 16 44 H 0.12 -1.25 8.14 -51.93 -0.42 -1.67 16 45 H 0.15 0.18 5.94 -52.49 -0.31 -0.13 16 LS Contribution 348.02 15.07 5.24 5.24 Total: 0.00 -18.59 348.02 -5.34 -23.93 By element: Atomic # 1 Polarization: -16.74 SS G_CDS: -6.99 Total: -23.72 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 0.94 Total: -0.44 kcal Atomic # 7 Polarization: -8.45 SS G_CDS: 0.60 Total: -7.84 kcal Atomic # 8 Polarization: -1.00 SS G_CDS: -0.12 Total: -1.12 kcal Atomic # 14 Polarization: 8.97 SS G_CDS: -5.02 Total: 3.95 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -18.59 -5.34 -23.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229220041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.755 kcal (2) G-P(sol) polarization free energy of solvation -18.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds