Wall clock time and date at job start Tue Mar 31 2020 08:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99683 * 2 1 4 4 C 1.39240 * 120.00170 * 180.02562 * 2 1 3 5 5 C 1.39604 * 121.06936 * 354.55558 * 4 2 1 6 6 N 1.31654 * 119.83576 * 179.72298 * 5 4 2 7 7 N 1.28305 * 122.33910 * 0.02562 * 6 5 4 8 8 C 1.32453 * 122.31442 * 359.97438 * 7 6 5 9 9 O 1.35705 * 120.08681 * 180.02562 * 8 7 6 10 10 C 1.42897 * 117.00537 * 0.02562 * 9 8 7 11 11 H 1.09004 * 109.46626 * 30.00161 * 10 9 8 12 12 C 1.50697 * 109.47304 * 270.00533 * 10 9 8 13 13 H 1.07995 * 119.99910 * 120.00135 * 12 10 9 14 14 C 1.37877 * 119.99625 * 299.99013 * 12 10 9 15 15 N 1.31506 * 120.00182 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 119.99603 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47081 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46964 * 120.00569 * 16 14 12 19 19 H 1.48509 * 109.46657 * 240.00349 * 16 14 12 20 20 C 1.52997 * 109.47118 * 149.99671 * 10 9 8 21 21 N 1.46899 * 109.47421 * 292.86767 * 20 10 9 22 22 C 1.46903 * 109.46968 * 63.50704 * 21 20 10 23 23 C 1.46904 * 109.46963 * 183.50445 * 21 20 10 24 24 C 1.46894 * 109.47537 * 303.50736 * 21 20 10 25 25 C 1.38953 * 119.82177 * 0.02562 * 8 7 6 26 26 H 1.09002 * 109.46961 * 269.99957 * 1 2 3 27 27 H 1.08992 * 109.47201 * 29.99998 * 1 2 3 28 28 H 1.09001 * 109.47190 * 150.00414 * 1 2 3 29 29 H 1.09000 * 109.47025 * 185.05364 * 3 2 1 30 30 H 1.09006 * 109.47295 * 305.04854 * 3 2 1 31 31 H 1.08996 * 109.47099 * 65.04943 * 3 2 1 32 32 H 1.07999 * 120.08477 * 359.70331 * 5 4 2 33 33 H 0.97007 * 120.00091 * 179.97438 * 15 14 12 34 34 H 1.08996 * 109.46858 * 52.87186 * 20 10 9 35 35 H 1.08997 * 109.47091 * 172.86771 * 20 10 9 36 36 H 1.09001 * 109.47046 * 49.17406 * 22 21 20 37 37 H 1.08997 * 109.46937 * 169.17557 * 22 21 20 38 38 H 1.08998 * 109.47082 * 289.17976 * 22 21 20 39 39 H 1.08999 * 109.47182 * 60.00253 * 23 21 20 40 40 H 1.09000 * 109.47000 * 180.02562 * 23 21 20 41 41 H 1.09002 * 109.47052 * 300.00227 * 23 21 20 42 42 H 1.09004 * 109.47240 * 59.99364 * 24 21 20 43 43 H 1.08998 * 109.47598 * 179.97438 * 24 21 20 44 44 H 1.09006 * 109.47197 * 300.00091 * 24 21 20 45 45 H 1.07994 * 121.08480 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1613 -1.2058 -0.0005 5 6 1.4906 -2.4250 0.1124 6 7 2.1728 -3.5510 0.1037 7 7 3.4509 -3.5784 -0.0055 8 6 4.1757 -2.4755 -0.1179 9 8 5.5255 -2.5572 -0.2314 10 6 6.0994 -3.8658 -0.2231 11 1 5.3894 -4.5765 -0.6463 12 6 6.4237 -4.2632 1.1939 13 1 5.9651 -5.1395 1.6273 14 6 7.3062 -3.5079 1.9368 15 7 7.8644 -2.4406 1.4090 16 14 7.7088 -4.0009 3.6930 17 1 6.9554 -5.2306 4.0470 18 1 9.1658 -4.2619 3.8123 19 1 7.3255 -2.9021 4.6157 20 6 7.3808 -3.8660 -1.0590 21 7 7.0439 -3.6469 -2.4720 22 6 6.4399 -2.3172 -2.6308 23 6 8.2645 -3.7306 -3.2851 24 6 6.0904 -4.6736 -2.9130 25 6 3.5502 -1.2347 -0.1192 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 3.2657 1.0716 -0.0905 30 1 1.8680 1.8785 -0.8413 31 1 2.0037 1.8001 0.9317 32 1 0.4150 -2.4445 0.2069 33 1 8.4850 -1.9090 1.9318 34 1 8.0393 -3.0687 -0.7146 35 1 7.8852 -4.8261 -0.9505 36 1 7.0611 -1.5740 -2.1310 37 1 6.3666 -2.0758 -3.6912 38 1 5.4439 -2.3153 -2.1880 39 1 8.7126 -4.7172 -3.1672 40 1 8.0146 -3.5676 -4.3334 41 1 8.9720 -2.9687 -2.9578 42 1 5.1847 -4.6116 -2.3096 43 1 5.8400 -4.5108 -3.9612 44 1 6.5385 -5.6603 -2.7951 45 1 4.1212 -0.3226 -0.2101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229220041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:45 Heat of formation + Delta-G solvation = 138.742229 kcal Electronic energy + Delta-G solvation = -25671.572859 eV Core-core repulsion = 22230.332836 eV Total energy + Delta-G solvation = -3441.240024 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.84010 -41.84223 -39.22443 -38.06096 -35.30762 -32.96502 -32.28578 -31.32234 -29.59822 -29.50055 -29.29668 -27.90383 -26.78292 -24.86082 -24.83202 -23.19585 -22.16333 -19.75835 -18.88977 -18.52701 -18.02866 -17.81993 -17.48177 -17.21309 -16.71689 -16.55806 -16.35966 -15.85183 -15.50860 -14.84703 -14.71350 -14.44871 -14.35855 -14.20660 -13.63760 -13.42112 -13.35670 -13.29034 -13.22556 -13.21194 -13.15206 -13.00753 -12.91558 -12.74783 -12.66565 -12.48454 -11.94358 -11.81164 -11.56151 -11.45683 -10.89568 -10.39177 -9.77222 -8.77410 -8.44340 -6.57572 0.09765 0.35567 0.97537 1.26860 1.41292 1.46287 1.82583 2.24944 2.32575 2.79750 2.81526 3.03047 3.07888 3.17447 3.42376 3.62508 3.84919 3.96129 3.98091 4.09442 4.14178 4.25898 4.27000 4.36249 4.43818 4.45926 4.47822 4.51512 4.58844 4.61041 4.68610 4.74670 4.76475 4.80040 4.81813 4.84786 4.91301 5.01113 5.11191 5.26400 5.57269 5.81388 6.00822 6.10005 6.33210 6.70021 7.23164 8.00135 8.55871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.613 5.613 3 C 0.077 3.923 4 C 0.241 3.759 5 C -0.060 4.060 6 N -0.207 5.207 7 N -0.372 5.372 8 C 0.310 3.690 9 O -0.287 6.287 10 C 0.192 3.808 11 H 0.074 0.926 12 C -0.555 4.555 13 H 0.048 0.952 14 C 0.071 3.929 15 N -0.866 5.866 16 Si 0.917 3.083 17 H -0.283 1.283 18 H -0.272 1.272 19 H -0.297 1.297 20 C 0.018 3.982 21 N -0.260 5.260 22 C -0.038 4.038 23 C -0.042 4.042 24 C -0.052 4.052 25 C -0.262 4.262 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.187 0.813 33 H 0.270 0.730 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.108 0.892 37 H 0.143 0.857 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.142 0.858 41 H 0.113 0.887 42 H 0.088 0.912 43 H 0.146 0.854 44 H 0.131 0.869 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.880 3.615 -19.598 19.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.322 5.322 3 C -0.065 4.065 4 C 0.124 3.876 5 C -0.236 4.236 6 N -0.047 5.047 7 N -0.232 5.232 8 C 0.127 3.873 9 O -0.191 6.191 10 C 0.137 3.863 11 H 0.091 0.909 12 C -0.593 4.593 13 H 0.067 0.933 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.746 3.254 17 H -0.208 1.208 18 H -0.198 1.198 19 H -0.224 1.224 20 C -0.103 4.103 21 N 0.082 4.918 22 C -0.180 4.180 23 C -0.182 4.182 24 C -0.193 4.193 25 C -0.297 4.297 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.204 0.796 33 H 0.080 0.920 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.127 0.873 37 H 0.161 0.839 38 H 0.110 0.890 39 H 0.144 0.856 40 H 0.160 0.840 41 H 0.132 0.868 42 H 0.107 0.893 43 H 0.164 0.836 44 H 0.150 0.850 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.549 2.520 -19.540 19.709 hybrid contribution 0.125 1.267 2.089 2.446 sum -0.425 3.787 -17.451 17.862 Atomic orbital electron populations 1.22005 0.76796 1.04771 1.02711 1.46636 1.06749 1.02625 1.76150 1.22012 0.97788 0.83761 1.02966 1.18718 0.91124 0.88107 0.89638 1.24157 1.03011 0.87898 1.08518 1.72478 1.00773 1.26127 1.05335 1.72878 1.00436 1.26020 1.23892 1.21251 0.86919 0.90794 0.88364 1.86503 1.12979 1.35404 1.84211 1.20319 0.90274 0.80520 0.95148 0.90880 1.21389 1.26392 1.12327 0.99215 0.93322 1.25127 0.94844 0.94287 0.99288 1.69671 1.28427 1.14610 1.37523 0.86156 0.78426 0.77869 0.82992 1.20766 1.19755 1.22436 1.24147 1.01005 1.09185 0.75948 1.46022 1.15938 1.14976 1.14840 1.24195 1.03025 0.82714 1.08017 1.24236 0.85769 1.09298 0.98898 1.24237 0.95182 0.93818 1.06037 1.20955 0.93072 0.98157 1.17508 0.92277 0.88714 0.90021 0.90282 0.89706 0.91772 0.79576 0.91978 0.84533 0.84501 0.87308 0.83926 0.88998 0.85612 0.83964 0.86787 0.89348 0.83630 0.85031 0.82387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.50 10.15 127.77 1.30 0.80 16 2 N -0.61 0.76 3.40 -746.49 -2.54 -1.78 16 3 C 0.08 -0.37 10.64 127.77 1.36 0.99 16 4 C 0.24 1.10 6.57 38.58 0.25 1.36 16 5 C -0.06 -0.40 10.46 85.05 0.89 0.49 16 6 N -0.21 -2.76 11.48 -56.76 -0.65 -3.41 16 7 N -0.37 -5.29 9.83 -170.29 -1.67 -6.96 16 8 C 0.31 3.31 6.66 84.77 0.56 3.88 16 9 O -0.29 -2.51 6.39 -90.25 -0.58 -3.09 16 10 C 0.19 1.38 1.64 29.85 0.05 1.43 16 11 H 0.07 0.44 4.70 -2.38 -0.01 0.42 16 12 C -0.56 -11.09 8.90 25.60 0.23 -10.87 16 13 H 0.05 1.24 7.81 -2.91 -0.02 1.21 16 14 C 0.07 1.58 5.24 84.66 0.44 2.02 16 15 N -0.87 -17.50 10.96 21.45 0.23 -17.26 16 16 Si 0.92 20.84 29.54 68.60 2.03 22.87 16 17 H -0.28 -7.09 7.11 99.48 0.71 -6.38 16 18 H -0.27 -5.96 7.11 99.48 0.71 -5.25 16 19 H -0.30 -7.72 7.11 99.48 0.71 -7.01 16 20 C 0.02 -0.09 3.49 86.30 0.30 0.21 16 21 N -0.26 4.83 0.05 ******* -0.07 4.76 16 22 C -0.04 0.64 7.09 127.69 0.91 1.54 16 23 C -0.04 1.10 7.99 127.69 1.02 2.12 16 24 C -0.05 1.04 7.56 127.69 0.97 2.01 16 25 C -0.26 -1.74 9.39 22.73 0.21 -1.53 16 26 H 0.06 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.09 -0.94 8.07 -2.39 -0.02 -0.96 16 28 H 0.08 -0.62 6.51 -2.39 -0.02 -0.64 16 29 H 0.08 -0.33 5.43 -2.39 -0.01 -0.34 16 30 H 0.08 -0.74 8.14 -2.38 -0.02 -0.76 16 31 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.19 0.10 6.43 -2.91 -0.02 0.08 16 33 H 0.27 5.70 8.31 -92.70 -0.77 4.93 16 34 H 0.14 0.02 6.14 -2.39 -0.01 0.00 16 35 H 0.14 -1.05 8.10 -2.39 -0.02 -1.07 16 36 H 0.11 -1.46 7.92 -2.39 -0.02 -1.48 16 37 H 0.14 -3.60 7.97 -2.39 -0.02 -3.62 16 38 H 0.09 -0.89 5.04 -2.39 -0.01 -0.90 16 39 H 0.13 -3.47 8.13 -2.39 -0.02 -3.49 16 40 H 0.14 -4.53 8.06 -2.39 -0.02 -4.55 16 41 H 0.11 -2.81 8.14 -2.39 -0.02 -2.83 16 42 H 0.09 -1.07 5.85 -2.38 -0.01 -1.08 16 43 H 0.15 -3.96 8.14 -2.39 -0.02 -3.98 16 44 H 0.13 -2.99 8.14 -2.38 -0.02 -3.01 16 45 H 0.16 0.50 5.94 -2.91 -0.02 0.48 16 Total: 0.00 -47.57 348.02 6.23 -41.34 By element: Atomic # 1 Polarization: -41.90 SS G_CDS: 0.98 Total: -40.92 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 8.49 Total: 4.44 kcal Atomic # 7 Polarization: -19.95 SS G_CDS: -4.69 Total: -24.65 kcal Atomic # 8 Polarization: -2.51 SS G_CDS: -0.58 Total: -3.09 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: 2.03 Total: 22.87 kcal Total: -47.57 6.23 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229220041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.082 kcal (2) G-P(sol) polarization free energy of solvation -47.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds