Wall clock time and date at job start Tue Mar 31 2020 06:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47177 * 2 1 4 4 N 1.46900 * 109.47061 * 185.42040 * 3 2 1 5 5 C 1.46901 * 111.00119 * 68.31276 * 4 3 2 6 6 C 1.50700 * 109.46919 * 66.04426 * 5 4 3 7 7 H 1.07997 * 119.99993 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99639 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99546 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00241 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47038 * 90.00098 * 10 8 6 12 12 H 1.48504 * 109.47079 * 209.99932 * 10 8 6 13 13 H 1.48501 * 109.47020 * 330.00177 * 10 8 6 14 14 C 1.46898 * 111.00099 * 304.36155 * 4 3 2 15 15 C 1.50706 * 109.46867 * 288.89958 * 14 4 3 16 16 C 1.38756 * 120.34968 * 100.88352 * 15 14 4 17 17 C 1.38373 * 118.53587 * 180.22971 * 16 15 14 18 18 C 1.39074 * 119.15736 * 359.49978 * 17 16 15 19 19 N 1.38990 * 119.69451 * 180.22960 * 18 17 16 20 20 C 1.46502 * 119.99759 * 10.55117 * 19 18 17 21 21 C 1.46500 * 120.00582 * 190.55462 * 19 18 17 22 22 N 1.32443 * 120.62034 * 0.50693 * 18 17 16 23 23 C 1.32148 * 121.58807 * 359.74767 * 22 18 17 24 24 F 1.35094 * 119.60262 * 180.02562 * 23 22 18 25 25 H 1.09003 * 109.47597 * 299.99904 * 1 2 3 26 26 H 1.08997 * 109.47706 * 59.99878 * 1 2 3 27 27 H 1.09003 * 109.47811 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46903 * 240.00275 * 2 1 3 29 29 H 1.08996 * 109.47409 * 120.00579 * 2 1 3 30 30 H 1.09000 * 109.46554 * 65.42239 * 3 2 1 31 31 H 1.08994 * 109.46764 * 305.42050 * 3 2 1 32 32 H 1.09000 * 109.47072 * 186.04812 * 5 4 3 33 33 H 1.09000 * 109.46917 * 306.04645 * 5 4 3 34 34 H 0.97004 * 119.99708 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.47495 * 168.89803 * 14 4 3 36 36 H 1.09001 * 109.47496 * 48.89398 * 14 4 3 37 37 H 1.08001 * 120.73419 * 359.94489 * 16 15 14 38 38 H 1.08000 * 120.42439 * 179.74044 * 17 16 15 39 39 H 1.09000 * 109.47311 * 5.66878 * 20 19 18 40 40 H 1.09001 * 109.46999 * 125.66996 * 20 19 18 41 41 H 1.09007 * 109.47122 * 245.67387 * 20 19 18 42 42 H 1.09000 * 109.47081 * 89.99698 * 21 19 18 43 43 H 1.08997 * 109.47546 * 209.99786 * 21 19 18 44 44 H 1.09000 * 109.46825 * 329.99839 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5031 1.4446 -0.1308 5 6 3.9133 0.9789 -1.4623 6 6 3.4588 1.9696 -2.5030 7 1 2.9197 2.8567 -2.2050 8 6 3.7314 1.7435 -3.8355 9 7 3.3344 2.6079 -4.7437 10 14 4.6634 0.2089 -4.3510 11 1 3.6998 -0.8891 -4.6179 12 1 5.4431 0.4934 -5.5824 13 1 5.5880 -0.1977 -3.2624 14 6 4.1272 0.6360 0.9249 15 6 3.9938 1.3469 2.2471 16 6 3.0156 0.9637 3.1536 17 6 2.9236 1.6453 4.3542 18 6 3.8159 2.6793 4.6165 19 7 3.7365 3.3683 5.8210 20 6 2.8802 2.8648 6.8978 21 6 4.5091 4.5979 6.0139 22 7 4.7371 3.0173 3.7270 23 6 4.8459 2.3882 2.5700 24 9 5.8008 2.7659 1.6922 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7580 1.9275 0.9346 31 1 1.5995 1.9836 -0.8374 32 1 4.9989 0.8878 -1.4969 33 1 3.4606 0.0078 -1.6630 34 1 3.5265 2.4490 -5.6812 35 1 5.1828 0.4908 0.6954 36 1 3.6311 -0.3329 0.9818 37 1 2.3380 0.1543 2.9251 38 1 2.1709 1.3752 5.0801 39 1 2.4677 1.8973 6.6118 40 1 3.4689 2.7539 7.8085 41 1 2.0667 3.5686 7.0743 42 1 3.9150 5.4542 5.6946 43 1 4.7639 4.7054 7.0682 44 1 5.4233 4.5491 5.4223 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233116465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:42 Heat of formation + Delta-G solvation = 17.164007 kcal Electronic energy + Delta-G solvation = -24376.593062 eV Core-core repulsion = 20858.390878 eV Total energy + Delta-G solvation = -3518.202184 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.176 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.56926 -40.27879 -37.85131 -36.33391 -32.95776 -32.76979 -31.96724 -30.56432 -28.37061 -27.82257 -26.59816 -24.89179 -23.58396 -22.75487 -21.97240 -21.26246 -19.21511 -17.89095 -17.34794 -16.71989 -15.98797 -15.95947 -15.24932 -15.11969 -14.94255 -14.85099 -14.31687 -14.07773 -13.85456 -13.37664 -13.24895 -12.95387 -12.83121 -12.71653 -12.61794 -12.37633 -12.21154 -11.92487 -11.74786 -11.44599 -11.19701 -11.11600 -10.89890 -10.66150 -10.31358 -9.98817 -9.88838 -9.73582 -9.55527 -9.43183 -9.21520 -8.52734 -7.58480 -7.26101 -6.00417 -3.96788 1.20666 1.38350 2.67320 3.30652 3.38949 3.41122 3.76026 3.95452 4.45919 4.62594 4.73056 4.91357 4.97104 5.06119 5.07602 5.15635 5.25062 5.32246 5.39412 5.43447 5.44079 5.46722 5.61582 5.74391 5.75709 5.92696 5.95256 6.03769 6.08792 6.21807 6.30051 6.33721 6.46511 6.54736 6.63765 6.71530 6.84925 6.99066 7.07073 7.21928 7.65345 7.91850 7.95563 8.09518 8.70856 9.08944 9.61466 11.12886 Molecular weight = 295.18amu Principal moments of inertia in cm(-1) A = 0.020637 B = 0.004088 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.467008 B = 6847.543063 C = 7570.487031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.163 4.163 3 C 0.064 3.936 4 N -0.519 5.519 5 C 0.160 3.840 6 C -0.504 4.504 7 H 0.080 0.920 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.873 3.127 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.095 3.905 15 C -0.192 4.192 16 C -0.005 4.005 17 C -0.254 4.254 18 C 0.427 3.573 19 N -0.621 5.621 20 C 0.095 3.905 21 C 0.098 3.902 22 N -0.576 5.576 23 C 0.377 3.623 24 F -0.100 7.100 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.028 0.972 33 H -0.011 1.011 34 H 0.263 0.737 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.459 -3.898 22.925 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C -0.065 4.065 4 N -0.241 5.241 5 C 0.034 3.966 6 C -0.542 4.542 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.541 5.541 10 Si 0.700 3.300 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.191 1.191 14 C -0.034 4.034 15 C -0.198 4.198 16 C -0.031 4.031 17 C -0.278 4.278 18 C 0.193 3.807 19 N -0.336 5.336 20 C -0.048 4.048 21 C -0.045 4.045 22 N -0.299 5.299 23 C 0.223 3.777 24 F -0.079 7.079 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.046 0.954 33 H 0.007 0.993 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.671 -2.582 23.069 23.273 hybrid contribution -0.131 -2.050 -0.832 2.216 sum -1.802 -4.632 22.236 22.785 Atomic orbital electron populations 1.21650 0.96098 1.00703 1.01687 1.22190 0.96057 1.00411 1.01503 1.22113 0.88166 0.94390 1.01794 1.62186 1.06966 1.51902 1.03065 1.20236 0.95864 0.94724 0.85764 1.21010 1.36139 1.07603 0.89456 0.90185 1.24881 0.95579 0.96289 0.96552 1.69896 1.47134 1.35866 1.01158 0.86895 0.80641 0.83984 0.78436 1.20437 1.21220 1.19121 1.20878 1.00489 0.93882 0.88162 1.20359 0.99501 1.00572 0.99384 1.21115 0.94246 0.96730 0.91036 1.21348 1.04039 1.01868 1.00562 1.17717 0.88513 0.88756 0.85692 1.46145 1.49304 1.26412 1.11731 1.21741 0.93931 1.00142 0.88981 1.21559 0.96686 0.85070 1.01202 1.66226 1.25507 1.34152 1.04020 1.17425 0.86146 0.89815 0.84328 1.91658 1.60965 1.90255 1.65027 0.93328 0.92374 0.93615 0.91314 0.92970 0.92812 0.89285 0.95416 0.99342 0.92750 0.90493 0.93660 0.84350 0.84596 0.90221 0.92206 0.92529 0.93444 0.92004 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.91 37.15 0.37 -1.61 16 2 C -0.16 -2.60 5.17 -26.73 -0.14 -2.74 16 3 C 0.06 1.20 4.96 -3.82 -0.02 1.18 16 4 N -0.52 -10.83 4.65 -237.51 -1.11 -11.94 16 5 C 0.16 3.85 3.65 -4.97 -0.02 3.84 16 6 C -0.50 -14.32 8.95 -34.44 -0.31 -14.63 16 7 H 0.08 2.50 7.41 -52.49 -0.39 2.11 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 10 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 14 C 0.09 1.63 4.60 -4.97 -0.02 1.61 16 15 C -0.19 -3.03 4.75 -104.38 -0.50 -3.52 16 16 C -0.01 -0.07 9.18 -39.34 -0.36 -0.43 16 17 C -0.25 -2.95 9.24 -39.22 -0.36 -3.31 16 18 C 0.43 5.76 7.34 -155.02 -1.14 4.63 16 19 N -0.62 -6.62 3.39 -189.67 -0.64 -7.27 16 20 C 0.10 0.63 10.53 59.85 0.63 1.26 16 21 C 0.10 0.94 10.59 59.85 0.63 1.57 16 22 N -0.58 -9.39 9.09 -12.78 -0.12 -9.51 16 23 C 0.38 6.56 8.36 -17.37 -0.15 6.42 16 24 F -0.10 -1.94 16.70 2.25 0.04 -1.90 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.25 6.31 -51.93 -0.33 0.93 16 29 H 0.05 0.73 5.62 -51.93 -0.29 0.44 16 30 H 0.05 0.94 7.13 -51.93 -0.37 0.57 16 31 H 0.09 1.94 6.67 -51.93 -0.35 1.59 16 32 H 0.03 0.69 6.93 -51.93 -0.36 0.33 16 33 H -0.01 -0.26 5.65 -51.93 -0.29 -0.55 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.08 1.36 7.66 -51.93 -0.40 0.96 16 36 H 0.05 0.70 5.64 -51.93 -0.29 0.41 16 37 H 0.14 1.45 7.26 -52.49 -0.38 1.07 16 38 H 0.14 1.15 5.96 -52.49 -0.31 0.84 16 39 H 0.08 0.46 5.50 -51.93 -0.29 0.17 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 44 H 0.08 0.93 7.25 -51.93 -0.38 0.55 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -32.57 348.94 -8.48 -41.05 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.55 Total: -1.75 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.47 Total: -3.86 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -1.09 Total: -55.74 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.57 -8.48 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233116465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.218 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds