Wall clock time and date at job start Tue Mar 31 2020 06:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47177 * 2 1 4 4 N 1.46900 * 109.47061 * 185.42040 * 3 2 1 5 5 C 1.46901 * 111.00119 * 68.31276 * 4 3 2 6 6 C 1.50700 * 109.46919 * 66.04426 * 5 4 3 7 7 H 1.07997 * 119.99993 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99639 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99546 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00241 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47038 * 90.00098 * 10 8 6 12 12 H 1.48504 * 109.47079 * 209.99932 * 10 8 6 13 13 H 1.48501 * 109.47020 * 330.00177 * 10 8 6 14 14 C 1.46898 * 111.00099 * 304.36155 * 4 3 2 15 15 C 1.50706 * 109.46867 * 288.89958 * 14 4 3 16 16 C 1.38756 * 120.34968 * 100.88352 * 15 14 4 17 17 C 1.38373 * 118.53587 * 180.22971 * 16 15 14 18 18 C 1.39074 * 119.15736 * 359.49978 * 17 16 15 19 19 N 1.38990 * 119.69451 * 180.22960 * 18 17 16 20 20 C 1.46502 * 119.99759 * 10.55117 * 19 18 17 21 21 C 1.46500 * 120.00582 * 190.55462 * 19 18 17 22 22 N 1.32443 * 120.62034 * 0.50693 * 18 17 16 23 23 C 1.32148 * 121.58807 * 359.74767 * 22 18 17 24 24 F 1.35094 * 119.60262 * 180.02562 * 23 22 18 25 25 H 1.09003 * 109.47597 * 299.99904 * 1 2 3 26 26 H 1.08997 * 109.47706 * 59.99878 * 1 2 3 27 27 H 1.09003 * 109.47811 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46903 * 240.00275 * 2 1 3 29 29 H 1.08996 * 109.47409 * 120.00579 * 2 1 3 30 30 H 1.09000 * 109.46554 * 65.42239 * 3 2 1 31 31 H 1.08994 * 109.46764 * 305.42050 * 3 2 1 32 32 H 1.09000 * 109.47072 * 186.04812 * 5 4 3 33 33 H 1.09000 * 109.46917 * 306.04645 * 5 4 3 34 34 H 0.97004 * 119.99708 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.47495 * 168.89803 * 14 4 3 36 36 H 1.09001 * 109.47496 * 48.89398 * 14 4 3 37 37 H 1.08001 * 120.73419 * 359.94489 * 16 15 14 38 38 H 1.08000 * 120.42439 * 179.74044 * 17 16 15 39 39 H 1.09000 * 109.47311 * 5.66878 * 20 19 18 40 40 H 1.09001 * 109.46999 * 125.66996 * 20 19 18 41 41 H 1.09007 * 109.47122 * 245.67387 * 20 19 18 42 42 H 1.09000 * 109.47081 * 89.99698 * 21 19 18 43 43 H 1.08997 * 109.47546 * 209.99786 * 21 19 18 44 44 H 1.09000 * 109.46825 * 329.99839 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5031 1.4446 -0.1308 5 6 3.9133 0.9789 -1.4623 6 6 3.4588 1.9696 -2.5030 7 1 2.9197 2.8567 -2.2050 8 6 3.7314 1.7435 -3.8355 9 7 3.3344 2.6079 -4.7437 10 14 4.6634 0.2089 -4.3510 11 1 3.6998 -0.8891 -4.6179 12 1 5.4431 0.4934 -5.5824 13 1 5.5880 -0.1977 -3.2624 14 6 4.1272 0.6360 0.9249 15 6 3.9938 1.3469 2.2471 16 6 3.0156 0.9637 3.1536 17 6 2.9236 1.6453 4.3542 18 6 3.8159 2.6793 4.6165 19 7 3.7365 3.3683 5.8210 20 6 2.8802 2.8648 6.8978 21 6 4.5091 4.5979 6.0139 22 7 4.7371 3.0173 3.7270 23 6 4.8459 2.3882 2.5700 24 9 5.8008 2.7659 1.6922 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7580 1.9275 0.9346 31 1 1.5995 1.9836 -0.8374 32 1 4.9989 0.8878 -1.4969 33 1 3.4606 0.0078 -1.6630 34 1 3.5265 2.4490 -5.6812 35 1 5.1828 0.4908 0.6954 36 1 3.6311 -0.3329 0.9818 37 1 2.3380 0.1543 2.9251 38 1 2.1709 1.3752 5.0801 39 1 2.4677 1.8973 6.6118 40 1 3.4689 2.7539 7.8085 41 1 2.0667 3.5686 7.0743 42 1 3.9150 5.4542 5.6946 43 1 4.7639 4.7054 7.0682 44 1 5.4233 4.5491 5.4223 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233116465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:42 Heat of formation + Delta-G solvation = -4.401693 kcal Electronic energy + Delta-G solvation = -24377.528221 eV Core-core repulsion = 20858.390878 eV Total energy + Delta-G solvation = -3519.137343 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.176 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.90664 -41.32640 -39.27801 -37.29093 -34.84755 -34.03814 -33.36996 -31.82345 -29.56176 -29.03347 -27.83320 -26.18241 -24.85688 -23.90795 -23.47539 -22.43239 -20.76468 -18.95503 -18.84813 -18.41437 -17.23435 -17.00489 -16.71439 -16.48870 -15.96897 -15.94328 -15.77773 -15.56590 -15.29396 -14.58263 -14.45140 -14.34870 -14.13706 -13.83515 -13.61976 -13.42838 -13.34398 -13.02358 -12.96566 -12.75740 -12.67132 -12.61674 -12.34664 -12.17614 -11.92412 -11.78858 -11.43014 -11.30271 -10.93169 -10.75492 -10.63185 -10.46928 -8.86490 -8.49396 -8.25724 -6.27794 0.11310 0.34742 1.33887 1.37275 1.47862 1.85228 2.36047 2.67237 2.90100 3.07769 3.41177 3.70229 3.83921 3.97252 4.08557 4.16145 4.20460 4.36684 4.44720 4.51423 4.54762 4.56757 4.60959 4.70097 4.79385 4.81126 4.87473 4.92841 4.97301 4.97566 5.05423 5.07401 5.13845 5.26647 5.29286 5.41440 5.51198 5.56710 5.60179 5.90997 6.03084 6.29760 6.45458 6.70115 6.77939 6.92059 7.35005 8.91324 Molecular weight = 295.18amu Principal moments of inertia in cm(-1) A = 0.020637 B = 0.004088 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.467008 B = 6847.543063 C = 7570.487031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.155 4.155 3 C 0.070 3.930 4 N -0.543 5.543 5 C 0.173 3.827 6 C -0.509 4.509 7 H 0.032 0.968 8 C 0.007 3.993 9 N -0.951 5.951 10 Si 0.946 3.054 11 H -0.263 1.263 12 H -0.284 1.284 13 H -0.250 1.250 14 C 0.100 3.900 15 C -0.204 4.204 16 C 0.002 3.998 17 C -0.235 4.235 18 C 0.414 3.586 19 N -0.621 5.621 20 C 0.087 3.913 21 C 0.095 3.905 22 N -0.603 5.603 23 C 0.342 3.658 24 F -0.127 7.127 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.021 0.979 33 H 0.000 1.000 34 H 0.265 0.735 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.171 0.829 38 H 0.178 0.822 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.092 0.908 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 -6.632 26.152 27.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.193 4.193 3 C -0.058 4.058 4 N -0.266 5.266 5 C 0.046 3.954 6 C -0.547 4.547 7 H 0.051 0.949 8 C -0.190 4.190 9 N -0.592 5.592 10 Si 0.769 3.231 11 H -0.188 1.188 12 H -0.209 1.209 13 H -0.174 1.174 14 C -0.027 4.027 15 C -0.211 4.211 16 C -0.024 4.024 17 C -0.259 4.259 18 C 0.178 3.822 19 N -0.336 5.336 20 C -0.054 4.054 21 C -0.048 4.048 22 N -0.328 5.328 23 C 0.190 3.810 24 F -0.106 7.106 25 H 0.088 0.912 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.018 0.982 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.188 0.812 38 H 0.195 0.805 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.111 0.889 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.892 -5.313 26.358 27.043 hybrid contribution 0.162 -1.032 -1.626 1.932 sum -2.730 -6.346 24.732 25.679 Atomic orbital electron populations 1.21624 0.94269 1.02137 1.01704 1.22101 0.97633 0.97856 1.01752 1.21988 0.86918 0.96270 1.00583 1.62024 1.08490 1.53588 1.02466 1.19933 0.95147 0.93711 0.86619 1.21234 1.35364 1.07021 0.91087 0.94937 1.25833 0.96663 1.00058 0.96459 1.70062 1.49018 1.38435 1.01675 0.85738 0.79531 0.79558 0.78282 1.18836 1.20944 1.17363 1.20835 0.99665 0.94585 0.87652 1.20276 1.00755 1.00709 0.99375 1.21453 0.93306 0.97139 0.90496 1.21771 1.03522 0.99979 1.00675 1.18253 0.88288 0.89534 0.86097 1.46531 1.49345 1.26146 1.11539 1.22046 0.94057 1.01029 0.88261 1.21600 0.95609 0.84887 1.02665 1.66176 1.27176 1.35063 1.04368 1.17736 0.86969 0.91383 0.84942 1.91578 1.62213 1.90762 1.66089 0.91229 0.94544 0.91408 0.93748 0.89808 0.91241 0.93680 0.96119 0.98241 0.92568 0.91748 0.91107 0.81163 0.80492 0.88866 0.90414 0.91097 0.93576 0.88920 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.91 71.98 0.71 -2.78 16 2 C -0.15 -4.62 5.17 30.59 0.16 -4.46 16 3 C 0.07 2.65 4.96 86.30 0.43 3.08 16 4 N -0.54 -23.00 4.65 -905.36 -4.21 -27.22 16 5 C 0.17 8.46 3.65 85.56 0.31 8.78 16 6 C -0.51 -30.33 8.95 25.60 0.23 -30.10 16 7 H 0.03 2.18 7.41 -2.91 -0.02 2.16 16 8 C 0.01 0.39 5.47 84.66 0.46 0.86 16 9 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 10 Si 0.95 45.09 27.47 68.60 1.88 46.97 16 11 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 13 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 14 C 0.10 3.37 4.60 85.56 0.39 3.77 16 15 C -0.20 -6.22 4.75 -19.71 -0.09 -6.31 16 16 C 0.00 0.04 9.18 22.43 0.21 0.24 16 17 C -0.24 -4.52 9.24 22.50 0.21 -4.31 16 18 C 0.41 10.32 7.34 133.04 0.98 11.29 16 19 N -0.62 -11.60 3.39 -754.00 -2.56 -14.16 16 20 C 0.09 0.78 10.53 127.77 1.35 2.13 16 21 C 0.10 1.69 10.59 127.77 1.35 3.05 16 22 N -0.60 -19.79 9.09 -194.33 -1.77 -21.55 16 23 C 0.34 12.20 8.36 84.68 0.71 12.91 16 24 F -0.13 -5.25 16.70 44.97 0.75 -4.49 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.04 1.55 6.31 -2.38 -0.02 1.53 16 29 H 0.08 1.97 5.62 -2.39 -0.01 1.96 16 30 H 0.07 2.36 7.13 -2.39 -0.02 2.35 16 31 H 0.04 2.07 6.67 -2.39 -0.02 2.05 16 32 H 0.02 1.04 6.93 -2.39 -0.02 1.02 16 33 H 0.00 0.00 5.65 -2.39 -0.01 -0.01 16 34 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.06 2.29 7.66 -2.39 -0.02 2.27 16 36 H 0.07 1.98 5.64 -2.39 -0.01 1.97 16 37 H 0.17 2.57 7.26 -2.91 -0.02 2.55 16 38 H 0.18 1.89 5.96 -2.91 -0.02 1.88 16 39 H 0.09 0.57 5.50 -2.39 -0.01 0.56 16 40 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 43 H 0.09 1.04 8.07 -2.39 -0.02 1.02 16 44 H 0.06 1.29 7.25 -2.39 -0.02 1.27 16 Total: -1.00 -76.87 348.94 2.74 -74.13 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.94 Total: 8.96 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 7.40 Total: -1.86 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -8.24 Total: -123.70 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.75 Total: -4.49 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -76.87 2.74 -74.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233116465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.726 kcal (2) G-P(sol) polarization free energy of solvation -76.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds