Wall clock time and date at job start Tue Mar 31 2020 08:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45198 * 109.47076 * 2 1 4 4 C 1.34223 * 117.00121 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00084 * 359.97438 * 4 3 2 6 6 C 1.50709 * 120.00292 * 179.97438 * 4 3 2 7 7 N 1.46896 * 109.47318 * 179.97438 * 6 4 3 8 8 C 1.46902 * 111.00088 * 76.05760 * 7 6 4 9 9 C 1.50702 * 109.47194 * 195.65147 * 8 7 6 10 10 H 1.07996 * 119.99996 * 355.12540 * 9 8 7 11 11 C 1.37876 * 119.99876 * 175.12493 * 9 8 7 12 12 N 1.31511 * 119.99899 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46879 * 90.00245 * 13 11 9 15 15 H 1.48499 * 109.47120 * 210.00258 * 13 11 9 16 16 H 1.48504 * 109.47082 * 330.00017 * 13 11 9 17 17 C 1.46893 * 110.99819 * 200.00913 * 7 6 4 18 18 C 1.52946 * 109.41344 * 70.20663 * 17 7 6 19 19 C 1.53181 * 109.45348 * 176.91024 * 18 17 7 20 20 C 1.53149 * 108.88362 * 56.56164 * 19 18 17 21 21 C 1.52852 * 117.67761 * 91.49607 * 20 19 18 22 22 C 1.52813 * 117.75029 * 160.37699 * 20 19 18 23 23 C 1.53156 * 115.01210 * 306.06432 * 20 19 18 24 24 C 1.52940 * 109.41686 * 309.84475 * 17 7 6 25 25 H 1.09006 * 109.46505 * 60.00497 * 1 2 3 26 26 H 1.09004 * 109.46927 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47329 * 300.00432 * 1 2 3 28 28 H 1.08993 * 109.47508 * 239.99994 * 2 1 3 29 29 H 1.08997 * 109.46696 * 119.99701 * 2 1 3 30 30 H 1.08996 * 109.46825 * 59.99909 * 6 4 3 31 31 H 1.09001 * 109.47000 * 300.00432 * 6 4 3 32 32 H 1.09000 * 109.46764 * 315.64911 * 8 7 6 33 33 H 1.08994 * 109.47275 * 75.64427 * 8 7 6 34 34 H 0.97010 * 119.99769 * 179.97438 * 12 11 9 35 35 H 1.09008 * 109.41419 * 189.98543 * 17 7 6 36 36 H 1.08993 * 109.47346 * 296.90342 * 18 17 7 37 37 H 1.09001 * 109.47496 * 56.91737 * 18 17 7 38 38 H 1.09001 * 109.56634 * 296.74360 * 19 18 17 39 39 H 1.09001 * 109.57148 * 176.38432 * 19 18 17 40 40 H 1.08996 * 117.50658 * 215.22122 * 21 20 19 41 41 H 1.09000 * 117.49758 * 0.27553 * 21 20 19 42 42 H 1.08999 * 117.49843 * 359.84830 * 22 20 19 43 43 H 1.08998 * 117.50410 * 144.89420 * 22 20 19 44 44 H 1.09005 * 109.56471 * 294.12233 * 23 20 19 45 45 H 1.08989 * 109.57138 * 173.75911 * 23 20 19 46 46 H 1.09000 * 109.47095 * 303.08528 * 24 17 7 47 47 H 1.09000 * 109.47485 * 63.09218 * 24 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9208 2.9375 0.0000 7 7 5.3877 2.8606 0.0014 8 6 5.8974 2.5021 -1.3290 9 6 7.3334 2.0595 -1.2143 10 1 7.8429 2.1204 -0.2640 11 6 7.9966 1.5769 -2.3225 12 7 7.3759 1.5023 -3.4795 13 14 9.7768 1.0290 -2.1805 14 1 9.8243 -0.4136 -1.8317 15 1 10.4670 1.2479 -3.4770 16 1 10.4542 1.8174 -1.1199 17 6 5.9804 4.1203 0.4702 18 6 5.7132 4.2816 1.9674 19 6 6.3963 5.5559 2.4732 20 6 5.8914 6.7475 1.6543 21 6 4.6743 7.5069 2.1820 22 6 6.0640 8.1443 2.2495 23 6 6.0326 6.5966 0.1367 24 6 5.3608 5.2899 -0.2962 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.5844 3.4701 0.8895 31 1 3.5852 3.4691 -0.8905 32 1 5.2985 1.6896 -1.7405 33 1 5.8356 3.3685 -1.9874 34 1 7.8426 1.1631 -4.2593 35 1 7.0562 4.1018 0.2952 36 1 4.6392 4.3523 2.1393 37 1 6.1109 3.4192 2.5025 38 1 7.4759 5.4629 2.3549 39 1 6.1543 5.7071 3.5252 40 1 3.9729 7.9053 1.4490 41 1 4.2326 7.1623 3.1170 42 1 6.5363 8.2190 3.2290 43 1 6.2766 8.9621 1.5610 44 1 7.0891 6.5700 -0.1307 45 1 5.5495 7.4377 -0.3603 46 1 5.5087 5.1424 -1.3660 47 1 4.2936 5.3411 -0.0804 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254448001.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:53 Heat of formation + Delta-G solvation = -69.907322 kcal Electronic energy + Delta-G solvation = -25099.874412 eV Core-core repulsion = 21669.064085 eV Total energy + Delta-G solvation = -3430.810327 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.05995 -39.34023 -37.07632 -35.81564 -33.09071 -32.15777 -31.54609 -30.65252 -28.33407 -27.00769 -24.75779 -23.01682 -22.76135 -22.40362 -21.67649 -20.88559 -19.32331 -18.23189 -17.22062 -16.48081 -16.04918 -15.75074 -15.27726 -15.21470 -14.73567 -14.17930 -13.91021 -13.66466 -13.59917 -13.23415 -12.97145 -12.72534 -12.41714 -12.25378 -11.99430 -11.97554 -11.84694 -11.58726 -11.51469 -11.39665 -11.31579 -11.04222 -10.85229 -10.64770 -10.43650 -10.19324 -10.11352 -9.96739 -9.93765 -9.79613 -9.49903 -9.41336 -9.12774 -8.35088 -7.26718 -5.95048 -3.94169 2.87420 3.02347 3.37753 3.43396 3.46445 3.83651 4.48204 4.69984 4.79782 4.88929 5.01140 5.02764 5.06379 5.13539 5.23164 5.39067 5.41591 5.43143 5.47400 5.56923 5.61228 5.64581 5.75544 5.79716 5.81842 5.84266 5.87153 5.89766 5.99216 6.02688 6.11607 6.14652 6.26048 6.29787 6.38174 6.40830 6.49134 6.76668 6.85825 6.89302 7.27134 7.34508 7.83503 8.12821 8.20409 8.41380 8.58887 9.10931 9.68225 11.16314 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.007793 B = 0.006857 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3592.260730 B = 4082.478399 C = 7067.334732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.372 6.372 4 C 0.452 3.548 5 O -0.469 6.469 6 C 0.064 3.936 7 N -0.516 5.516 8 C 0.193 3.807 9 C -0.495 4.495 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.901 5.901 13 Si 0.896 3.104 14 H -0.281 1.281 15 H -0.289 1.289 16 H -0.274 1.274 17 C 0.097 3.903 18 C -0.108 4.108 19 C -0.079 4.079 20 C -0.114 4.114 21 C -0.177 4.177 22 C -0.181 4.181 23 C -0.075 4.075 24 C -0.149 4.149 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.036 0.964 33 H -0.007 1.007 34 H 0.260 0.740 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.189 8.411 9.831 16.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.291 6.291 4 C 0.292 3.708 5 O -0.352 6.352 6 C -0.066 4.066 7 N -0.240 5.240 8 C 0.068 3.932 9 C -0.533 4.533 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.541 5.541 13 Si 0.724 3.276 14 H -0.207 1.207 15 H -0.215 1.215 16 H -0.199 1.199 17 C -0.012 4.012 18 C -0.146 4.146 19 C -0.116 4.116 20 C -0.114 4.114 21 C -0.213 4.213 22 C -0.218 4.218 23 C -0.113 4.113 24 C -0.188 4.188 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.011 0.989 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.801 7.615 9.959 15.913 hybrid contribution 0.653 0.094 -0.677 0.946 sum -9.147 7.710 9.282 15.141 Atomic orbital electron populations 1.21782 0.93182 1.02520 1.03186 1.22883 0.94763 0.81131 1.02472 1.86468 1.25724 1.31661 1.85227 1.23936 0.79820 0.93541 0.73490 1.90720 1.59744 1.42543 1.42207 1.21516 0.92608 0.89475 1.02957 1.62003 1.00321 1.29945 1.31742 1.19835 0.96308 0.95102 0.81922 1.21059 0.95765 1.41288 0.95219 0.91970 1.24946 0.98324 0.95998 0.95331 1.69958 1.36843 1.47264 1.00026 0.86525 0.84775 0.79134 0.77122 1.20728 1.21461 1.19876 1.21612 1.00748 0.86139 0.92681 1.21594 0.99866 0.96759 0.96380 1.21126 1.00344 0.92837 0.97334 1.21553 1.01668 0.92388 0.95789 1.22979 0.91075 1.04623 1.02672 1.22965 1.00183 0.96434 1.02241 1.21065 1.01228 0.97447 0.91566 1.22245 0.99647 0.95429 1.01467 0.91654 0.90648 0.91757 0.91429 0.91605 0.88152 0.91561 0.94611 0.98937 0.93090 0.88492 0.92724 0.91127 0.91327 0.92280 0.89213 0.89203 0.89194 0.89191 0.91289 0.92488 0.91103 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.29 37.16 0.38 -1.09 16 2 C 0.06 0.86 6.19 37.16 0.23 1.09 16 3 O -0.37 -6.16 10.22 -39.24 -0.40 -6.56 16 4 C 0.45 8.84 7.57 36.01 0.27 9.12 16 5 O -0.47 -11.11 15.08 -18.75 -0.28 -11.39 16 6 C 0.06 1.15 4.11 -4.97 -0.02 1.13 16 7 N -0.52 -10.92 3.93 -229.59 -0.90 -11.83 16 8 C 0.19 5.02 4.21 -4.97 -0.02 5.00 16 9 C -0.49 -14.09 8.48 -34.44 -0.29 -14.38 16 10 H 0.06 1.76 7.44 -52.49 -0.39 1.37 16 11 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 13 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.10 1.73 1.96 -67.78 -0.13 1.59 16 18 C -0.11 -1.60 5.19 -26.67 -0.14 -1.74 16 19 C -0.08 -0.99 5.67 -26.56 -0.15 -1.15 16 20 C -0.11 -1.38 1.97 -154.52 -0.31 -1.68 16 21 C -0.18 -1.88 9.93 -26.79 -0.27 -2.14 16 22 C -0.18 -1.89 9.99 -26.81 -0.27 -2.16 16 23 C -0.07 -1.01 5.67 -26.56 -0.15 -1.16 16 24 C -0.15 -2.34 4.44 -26.67 -0.12 -2.46 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 29 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.10 1.51 5.99 -51.93 -0.31 1.20 16 31 H 0.07 1.15 7.41 -51.93 -0.38 0.76 16 32 H 0.04 1.05 6.76 -51.93 -0.35 0.70 16 33 H -0.01 -0.19 6.43 -51.93 -0.33 -0.52 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.10 1.99 6.95 -51.92 -0.36 1.63 16 36 H 0.05 0.76 6.54 -51.93 -0.34 0.42 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.70 8.09 -51.94 -0.42 0.28 16 46 H 0.07 1.28 6.58 -51.93 -0.34 0.93 16 47 H 0.06 0.82 6.81 -51.93 -0.35 0.47 16 LS Contribution 367.60 15.07 5.54 5.54 Total: -1.00 -32.17 367.60 -9.62 -41.79 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -8.21 Total: 0.37 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -1.08 Total: -8.56 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.16 Total: -38.39 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.68 Total: -17.95 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.17 -9.62 -41.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254448001.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.122 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds