Wall clock time and date at job start Tue Mar 31 2020 08:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.47243 * 2 1 4 4 C 1.34229 * 116.99958 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99809 * 179.97438 * 4 3 2 7 7 H 1.09001 * 110.43614 * 61.08045 * 6 4 3 8 8 C 1.54888 * 110.48382 * 298.54067 * 6 4 3 9 9 C 1.54896 * 102.74562 * 203.38033 * 8 6 4 10 10 C 1.54266 * 104.19583 * 37.94523 * 9 8 6 11 11 H 1.08991 * 110.03411 * 95.71995 * 10 9 8 12 12 N 1.46900 * 110.03167 * 217.10642 * 10 9 8 13 13 C 1.46906 * 110.99708 * 273.54471 * 12 10 9 14 14 H 1.08997 * 109.41348 * 34.99655 * 13 12 10 15 15 C 1.52957 * 109.40918 * 154.85934 * 13 12 10 16 16 C 1.53236 * 109.39826 * 183.70516 * 15 13 12 17 17 C 1.51271 * 108.53514 * 305.36727 * 16 15 13 18 18 C 1.37874 * 120.84923 * 231.32518 * 17 16 15 19 19 N 1.31510 * 120.00252 * 0.02562 * 18 17 16 20 20 Si 1.86810 * 119.99816 * 180.02562 * 18 17 16 21 21 H 1.48495 * 109.47111 * 90.00254 * 20 18 17 22 22 H 1.48500 * 109.46830 * 210.00398 * 20 18 17 23 23 H 1.48499 * 109.47069 * 330.00238 * 20 18 17 24 24 C 1.51266 * 118.29720 * 51.35486 * 17 16 15 25 25 C 1.52960 * 109.41113 * 275.13987 * 13 12 10 26 26 C 1.53875 * 106.59690 * 336.38919 * 10 9 8 27 27 H 1.09001 * 109.47002 * 60.00200 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00466 * 1 2 3 30 30 H 1.09001 * 109.46998 * 119.99242 * 2 1 3 31 31 H 1.09000 * 109.47050 * 239.99534 * 2 1 3 32 32 H 1.09000 * 110.75725 * 321.69268 * 8 6 4 33 33 H 1.08996 * 110.75552 * 84.88787 * 8 6 4 34 34 H 1.08996 * 110.48769 * 156.61997 * 9 8 6 35 35 H 1.08999 * 110.48790 * 279.13467 * 9 8 6 36 36 H 1.00900 * 110.99917 * 37.49803 * 12 10 9 37 37 H 1.09001 * 109.48516 * 303.67613 * 15 13 12 38 38 H 1.08998 * 109.48752 * 63.72853 * 15 13 12 39 39 H 1.08994 * 109.62862 * 65.08639 * 16 15 13 40 40 H 1.09005 * 109.62287 * 185.46830 * 16 15 13 41 41 H 0.97000 * 119.99922 * 179.97438 * 19 18 17 42 42 H 1.09000 * 109.62872 * 68.36267 * 24 17 16 43 43 H 1.09002 * 109.62194 * 188.74216 * 24 17 16 44 44 H 1.08994 * 109.48311 * 296.27432 * 25 13 12 45 45 H 1.09005 * 109.48279 * 56.31873 * 25 13 12 46 46 H 1.09005 * 110.03467 * 240.71501 * 26 10 9 47 47 H 1.09000 * 110.03336 * 119.28657 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.6102 3.4781 0.8928 8 6 3.4869 3.7028 -1.2758 9 6 4.5887 4.7823 -1.4179 10 6 5.8843 4.0581 -0.9975 11 1 6.4054 3.6836 -1.8784 12 7 6.7545 4.9764 -0.2509 13 6 7.6047 5.7538 -1.1624 14 1 7.0523 5.9706 -2.0767 15 6 8.0062 7.0665 -0.4876 16 6 8.8156 7.9178 -1.4716 17 6 9.9802 7.0941 -1.9752 18 6 11.2667 7.5881 -1.9317 19 7 11.4938 8.7895 -1.4475 20 14 12.6872 6.5506 -2.5607 21 1 12.8969 6.8225 -4.0055 22 1 13.9210 6.8927 -1.8084 23 1 12.3729 5.1121 -2.3682 24 6 9.6970 5.7150 -2.5282 25 6 8.8565 4.9442 -1.5046 26 6 5.4596 2.8850 -0.0967 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 3.4815 3.0402 -2.1413 33 1 2.5082 4.1619 -1.1364 34 1 4.6595 5.1214 -2.4514 35 1 4.3868 5.6231 -0.7544 36 1 6.2124 5.5843 0.3447 37 1 7.1103 7.6102 -0.1881 38 1 8.6129 6.8523 0.3922 39 1 8.1832 8.2088 -2.3102 40 1 9.1859 8.8095 -0.9656 41 1 12.3990 9.1368 -1.4166 42 1 9.1461 5.8020 -3.4647 43 1 10.6366 5.1909 -2.7035 44 1 9.4426 4.7813 -0.6002 45 1 8.5636 3.9827 -1.9264 46 1 5.8993 2.9971 0.8945 47 1 5.7743 1.9405 -0.5405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257035672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:50 Heat of formation + Delta-G solvation = -116.739231 kcal Electronic energy + Delta-G solvation = -24203.192889 eV Core-core repulsion = 20770.351778 eV Total energy + Delta-G solvation = -3432.841111 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86051 -38.74703 -37.05656 -36.40841 -33.53780 -32.09734 -31.29720 -29.65090 -29.05554 -28.02512 -25.81376 -23.87832 -22.29508 -21.75570 -21.40446 -20.57798 -19.52404 -19.07530 -18.01508 -16.88022 -16.71413 -16.07631 -15.61852 -15.12762 -14.42575 -14.38151 -14.08514 -13.64981 -13.36281 -13.33905 -13.19492 -12.70623 -12.55454 -12.40245 -12.16409 -12.00506 -11.96795 -11.84810 -11.72107 -11.28471 -11.03232 -10.98022 -10.90435 -10.82387 -10.66148 -10.53037 -10.43581 -10.32028 -10.05884 -9.90931 -9.40611 -8.84715 -8.57972 -8.41453 -7.88047 -6.05345 -3.95379 2.02671 2.42777 3.30808 3.39159 3.40658 4.23530 4.36483 4.42749 4.53303 4.56991 4.61288 4.65572 4.90228 5.02351 5.20198 5.23672 5.32734 5.36296 5.39311 5.41634 5.50752 5.55954 5.59272 5.73575 5.85532 5.90492 6.01530 6.05958 6.17811 6.21128 6.28910 6.36714 6.60983 6.74606 6.84977 6.93393 7.01855 7.10671 7.18577 7.51226 7.56932 7.63482 7.73119 7.79107 7.87415 7.93336 8.44405 9.01904 9.59774 11.04381 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.038731 B = 0.002718 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.757789 B =10301.037572 C =10700.909614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.358 6.358 4 C 0.469 3.531 5 O -0.506 6.506 6 C -0.088 4.088 7 H 0.112 0.888 8 C -0.107 4.107 9 C -0.153 4.153 10 C 0.086 3.914 11 H 0.083 0.917 12 N -0.684 5.684 13 C 0.101 3.899 14 H 0.032 0.968 15 C -0.108 4.108 16 C 0.012 3.988 17 C -0.483 4.483 18 C 0.074 3.926 19 N -0.892 5.892 20 Si 0.886 3.114 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.264 1.264 24 C -0.023 4.023 25 C -0.091 4.091 26 C -0.104 4.104 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.334 0.666 37 H 0.025 0.975 38 H 0.057 0.943 39 H 0.000 1.000 40 H 0.057 0.943 41 H 0.263 0.737 42 H 0.012 0.988 43 H 0.034 0.966 44 H 0.056 0.944 45 H 0.027 0.973 46 H 0.085 0.915 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.438 -12.861 2.704 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.312 3.688 5 O -0.393 6.393 6 C -0.107 4.107 7 H 0.130 0.870 8 C -0.145 4.145 9 C -0.192 4.192 10 C -0.025 4.025 11 H 0.101 0.899 12 N -0.314 5.314 13 C -0.007 4.007 14 H 0.050 0.950 15 C -0.146 4.146 16 C -0.026 4.026 17 C -0.502 4.502 18 C -0.128 4.128 19 N -0.531 5.531 20 Si 0.715 3.285 21 H -0.206 1.206 22 H -0.217 1.217 23 H -0.189 1.189 24 C -0.061 4.061 25 C -0.129 4.129 26 C -0.142 4.142 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.153 0.847 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.019 0.981 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.031 0.969 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.046 0.954 46 H 0.103 0.897 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.591 -13.516 2.876 23.974 hybrid contribution 0.135 -0.093 -0.633 0.654 sum -19.456 -13.609 2.244 23.849 Atomic orbital electron populations 1.21804 0.92627 1.02939 1.03553 1.23023 0.95373 0.80459 1.02581 1.86525 1.24806 1.32167 1.84053 1.23807 0.80312 0.92865 0.71841 1.90662 1.60362 1.43161 1.45144 1.22009 0.97585 0.89208 1.01941 0.86992 1.22398 0.99253 0.97287 0.95524 1.23168 0.95624 0.97909 1.02484 1.22197 0.91463 0.92888 0.95983 0.89858 1.60753 1.24336 1.23453 1.22859 1.21438 0.93194 0.93160 0.92943 0.94978 1.21805 0.98043 0.94565 1.00221 1.19351 0.93489 0.96258 0.93526 1.20038 0.92004 0.98604 1.39539 1.24853 0.98192 0.94963 0.94829 1.69838 1.21111 1.16588 1.45516 0.86687 0.81663 0.81242 0.78922 1.20555 1.21706 1.18894 1.19852 0.95977 0.95815 0.94475 1.21529 0.95583 0.95838 0.99963 1.22233 0.90169 0.99491 1.02350 0.91441 0.90287 0.91468 0.91291 0.91281 0.91107 0.90457 0.91061 0.90981 0.84743 0.95587 0.92448 0.98132 0.92486 0.92702 0.96916 0.94795 0.92558 0.95392 0.89663 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 37.16 0.38 -0.44 16 2 C 0.06 0.48 6.19 37.16 0.23 0.71 16 3 O -0.36 -3.68 10.20 -39.26 -0.40 -4.09 16 4 C 0.47 5.48 7.25 36.01 0.26 5.74 16 5 O -0.51 -7.35 15.21 -18.75 -0.29 -7.63 16 6 C -0.09 -0.90 3.36 -90.11 -0.30 -1.20 16 7 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 8 C -0.11 -1.00 6.30 -24.74 -0.16 -1.16 16 9 C -0.15 -1.67 6.29 -25.07 -0.16 -1.83 16 10 C 0.09 1.13 3.00 -66.59 -0.20 0.93 16 11 H 0.08 1.22 7.13 -51.93 -0.37 0.85 16 12 N -0.68 -10.58 5.97 -98.61 -0.59 -11.17 16 13 C 0.10 1.90 2.23 -67.75 -0.15 1.75 16 14 H 0.03 0.62 7.72 -51.93 -0.40 0.22 16 15 C -0.11 -2.26 5.24 -26.63 -0.14 -2.40 16 16 C 0.01 0.29 5.96 -27.48 -0.16 0.13 16 17 C -0.48 -12.81 5.51 -98.92 -0.55 -13.35 16 18 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 19 N -0.89 -25.92 12.73 55.43 0.71 -25.21 16 20 Si 0.89 21.40 27.53 -169.99 -4.68 16.72 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.26 -6.19 6.11 56.52 0.35 -5.84 16 24 C -0.02 -0.55 5.60 -27.48 -0.15 -0.70 16 25 C -0.09 -1.90 5.43 -26.63 -0.14 -2.04 16 26 C -0.10 -1.28 5.95 -25.61 -0.15 -1.43 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.76 7.59 -51.93 -0.39 0.37 16 36 H 0.33 4.72 7.70 -39.29 -0.30 4.42 16 37 H 0.03 0.48 8.05 -51.93 -0.42 0.06 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 40 H 0.06 1.56 7.08 -51.93 -0.37 1.19 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.03 0.80 4.59 -51.93 -0.24 0.57 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.03 0.54 7.39 -51.93 -0.38 0.15 16 46 H 0.08 1.09 7.92 -51.93 -0.41 0.67 16 47 H 0.08 1.12 6.91 -51.93 -0.36 0.76 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -29.68 362.17 -9.61 -39.29 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.33 Total: -0.01 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -1.49 Total: -13.35 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.12 Total: -36.38 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.69 Total: -11.72 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.68 Total: 16.72 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.68 -9.61 -39.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257035672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.450 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds