Wall clock time and date at job start Tue Mar 31 2020 08:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.47243 * 2 1 4 4 C 1.34229 * 116.99958 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99809 * 179.97438 * 4 3 2 7 7 H 1.09001 * 110.43614 * 61.08045 * 6 4 3 8 8 C 1.54888 * 110.48382 * 298.54067 * 6 4 3 9 9 C 1.54896 * 102.74562 * 203.38033 * 8 6 4 10 10 C 1.54266 * 104.19583 * 37.94523 * 9 8 6 11 11 H 1.08991 * 110.03411 * 95.71995 * 10 9 8 12 12 N 1.46900 * 110.03167 * 217.10642 * 10 9 8 13 13 C 1.46906 * 110.99708 * 273.54471 * 12 10 9 14 14 H 1.08997 * 109.41348 * 34.99655 * 13 12 10 15 15 C 1.52957 * 109.40918 * 154.85934 * 13 12 10 16 16 C 1.53236 * 109.39826 * 183.70516 * 15 13 12 17 17 C 1.51271 * 108.53514 * 305.36727 * 16 15 13 18 18 C 1.37874 * 120.84923 * 231.32518 * 17 16 15 19 19 N 1.31510 * 120.00252 * 0.02562 * 18 17 16 20 20 Si 1.86810 * 119.99816 * 180.02562 * 18 17 16 21 21 H 1.48495 * 109.47111 * 90.00254 * 20 18 17 22 22 H 1.48500 * 109.46830 * 210.00398 * 20 18 17 23 23 H 1.48499 * 109.47069 * 330.00238 * 20 18 17 24 24 C 1.51266 * 118.29720 * 51.35486 * 17 16 15 25 25 C 1.52960 * 109.41113 * 275.13987 * 13 12 10 26 26 C 1.53875 * 106.59690 * 336.38919 * 10 9 8 27 27 H 1.09001 * 109.47002 * 60.00200 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00466 * 1 2 3 30 30 H 1.09001 * 109.46998 * 119.99242 * 2 1 3 31 31 H 1.09000 * 109.47050 * 239.99534 * 2 1 3 32 32 H 1.09000 * 110.75725 * 321.69268 * 8 6 4 33 33 H 1.08996 * 110.75552 * 84.88787 * 8 6 4 34 34 H 1.08996 * 110.48769 * 156.61997 * 9 8 6 35 35 H 1.08999 * 110.48790 * 279.13467 * 9 8 6 36 36 H 1.00900 * 110.99917 * 37.49803 * 12 10 9 37 37 H 1.09001 * 109.48516 * 303.67613 * 15 13 12 38 38 H 1.08998 * 109.48752 * 63.72853 * 15 13 12 39 39 H 1.08994 * 109.62862 * 65.08639 * 16 15 13 40 40 H 1.09005 * 109.62287 * 185.46830 * 16 15 13 41 41 H 0.97000 * 119.99922 * 179.97438 * 19 18 17 42 42 H 1.09000 * 109.62872 * 68.36267 * 24 17 16 43 43 H 1.09002 * 109.62194 * 188.74216 * 24 17 16 44 44 H 1.08994 * 109.48311 * 296.27432 * 25 13 12 45 45 H 1.09005 * 109.48279 * 56.31873 * 25 13 12 46 46 H 1.09005 * 110.03467 * 240.71501 * 26 10 9 47 47 H 1.09000 * 110.03336 * 119.28657 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.6102 3.4781 0.8928 8 6 3.4869 3.7028 -1.2758 9 6 4.5887 4.7823 -1.4179 10 6 5.8843 4.0581 -0.9975 11 1 6.4054 3.6836 -1.8784 12 7 6.7545 4.9764 -0.2509 13 6 7.6047 5.7538 -1.1624 14 1 7.0523 5.9706 -2.0767 15 6 8.0062 7.0665 -0.4876 16 6 8.8156 7.9178 -1.4716 17 6 9.9802 7.0941 -1.9752 18 6 11.2667 7.5881 -1.9317 19 7 11.4938 8.7895 -1.4475 20 14 12.6872 6.5506 -2.5607 21 1 12.8969 6.8225 -4.0055 22 1 13.9210 6.8927 -1.8084 23 1 12.3729 5.1121 -2.3682 24 6 9.6970 5.7150 -2.5282 25 6 8.8565 4.9442 -1.5046 26 6 5.4596 2.8850 -0.0967 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 3.4815 3.0402 -2.1413 33 1 2.5082 4.1619 -1.1364 34 1 4.6595 5.1214 -2.4514 35 1 4.3868 5.6231 -0.7544 36 1 6.2124 5.5843 0.3447 37 1 7.1103 7.6102 -0.1881 38 1 8.6129 6.8523 0.3922 39 1 8.1832 8.2088 -2.3102 40 1 9.1859 8.8095 -0.9656 41 1 12.3990 9.1368 -1.4166 42 1 9.1461 5.8020 -3.4647 43 1 10.6366 5.1909 -2.7035 44 1 9.4426 4.7813 -0.6002 45 1 8.5636 3.9827 -1.9264 46 1 5.8993 2.9971 0.8945 47 1 5.7743 1.9405 -0.5405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257035672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:50 Heat of formation + Delta-G solvation = -133.203758 kcal Electronic energy + Delta-G solvation = -24203.906844 eV Core-core repulsion = 20770.351778 eV Total energy + Delta-G solvation = -3433.555066 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74608 -39.90130 -38.33072 -37.51151 -35.13414 -33.19681 -32.51979 -31.45287 -29.95506 -29.43352 -27.27389 -24.62417 -23.49194 -23.24176 -23.01876 -21.52760 -20.85156 -20.47146 -18.89463 -18.01891 -17.70426 -17.54320 -16.60467 -16.46284 -16.34818 -15.19674 -15.14149 -14.99988 -14.64182 -14.45107 -14.38328 -14.22894 -13.79299 -13.71553 -13.50966 -13.19040 -13.01221 -12.84346 -12.70419 -12.67700 -12.49960 -12.28029 -12.12963 -11.99032 -11.85190 -11.77919 -11.72744 -11.54771 -11.49925 -11.34943 -11.28832 -10.73312 -10.53273 -10.41733 -9.16064 -8.14914 -6.07884 1.13876 1.38160 1.41340 1.49378 1.66504 2.42012 3.07572 3.27310 3.48416 3.60632 3.75539 3.99970 4.08171 4.17180 4.22743 4.26083 4.35194 4.39462 4.45944 4.50003 4.57175 4.65632 4.67721 4.81507 4.85860 4.92601 4.96824 5.00833 5.04663 5.08976 5.10634 5.15605 5.19386 5.24382 5.28144 5.32436 5.35778 5.42732 5.48259 5.66397 5.66605 5.79790 5.93403 6.33151 6.39639 6.69078 6.71128 6.98560 7.49497 8.95977 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.038731 B = 0.002718 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.757789 B =10301.037572 C =10700.909614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.357 6.357 4 C 0.471 3.529 5 O -0.541 6.541 6 C -0.082 4.082 7 H 0.135 0.865 8 C -0.097 4.097 9 C -0.146 4.146 10 C 0.085 3.915 11 H 0.068 0.932 12 N -0.684 5.684 13 C 0.115 3.885 14 H 0.033 0.967 15 C -0.097 4.097 16 C 0.007 3.993 17 C -0.493 4.493 18 C 0.017 3.983 19 N -0.933 5.933 20 Si 0.938 3.062 21 H -0.275 1.275 22 H -0.293 1.293 23 H -0.252 1.252 24 C -0.025 4.025 25 C -0.087 4.087 26 C -0.099 4.099 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.346 0.654 37 H 0.053 0.947 38 H 0.040 0.960 39 H -0.001 1.001 40 H 0.024 0.976 41 H 0.261 0.739 42 H 0.019 0.981 43 H 0.032 0.968 44 H 0.040 0.960 45 H 0.046 0.954 46 H 0.080 0.920 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.770 -14.153 2.679 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.274 6.274 4 C 0.316 3.684 5 O -0.431 6.431 6 C -0.101 4.101 7 H 0.153 0.847 8 C -0.135 4.135 9 C -0.186 4.186 10 C -0.025 4.025 11 H 0.086 0.914 12 N -0.315 5.315 13 C 0.006 3.994 14 H 0.051 0.949 15 C -0.135 4.135 16 C -0.031 4.031 17 C -0.513 4.513 18 C -0.180 4.180 19 N -0.574 5.574 20 Si 0.765 3.235 21 H -0.200 1.200 22 H -0.220 1.220 23 H -0.176 1.176 24 C -0.063 4.063 25 C -0.125 4.125 26 C -0.137 4.137 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.166 0.834 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.017 0.983 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.037 0.963 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.099 0.901 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.963 -14.822 2.848 26.649 hybrid contribution 0.776 0.289 -0.625 1.037 sum -21.187 -14.533 2.224 25.788 Atomic orbital electron populations 1.21817 0.90322 1.04312 1.03804 1.23285 0.97171 0.79450 1.02368 1.86523 1.23887 1.33442 1.83521 1.24056 0.80579 0.92961 0.70832 1.90654 1.61185 1.44342 1.46918 1.22008 0.95879 0.88783 1.03463 0.84735 1.22362 0.99749 0.96560 0.94828 1.23084 0.94599 0.98351 1.02524 1.22199 0.92113 0.92856 0.95381 0.91385 1.60603 1.25220 1.23218 1.22505 1.21114 0.92990 0.91990 0.93343 0.94875 1.21601 0.98190 0.95342 0.98403 1.19328 0.93839 0.95763 0.94150 1.20667 0.92384 0.99878 1.38322 1.25620 1.00799 0.95952 0.95640 1.69972 1.21365 1.18298 1.47722 0.85842 0.78810 0.80429 0.78438 1.20036 1.21975 1.17634 1.19875 0.96584 0.94531 0.95339 1.21426 0.95955 0.96650 0.98476 1.22082 0.91908 0.98116 1.01570 0.91188 0.88382 0.91148 0.91514 0.91618 0.91404 0.88212 0.91244 0.89938 0.83450 0.92866 0.94154 0.98274 0.95734 0.92965 0.96287 0.95006 0.94137 0.93579 0.90149 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 71.98 0.74 -0.50 16 2 C 0.05 0.75 6.19 71.98 0.45 1.20 16 3 O -0.36 -6.62 10.20 -51.41 -0.52 -7.15 16 4 C 0.47 10.25 7.25 71.24 0.52 10.76 16 5 O -0.54 -15.38 15.21 21.96 0.33 -15.05 16 6 C -0.08 -1.47 3.36 -10.47 -0.04 -1.51 16 7 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 8 C -0.10 -1.51 6.30 31.89 0.20 -1.31 16 9 C -0.15 -2.76 6.29 31.67 0.20 -2.56 16 10 C 0.08 2.06 3.00 45.64 0.14 2.20 16 11 H 0.07 1.88 7.13 -2.39 -0.02 1.86 16 12 N -0.68 -19.67 5.97 -465.91 -2.78 -22.45 16 13 C 0.11 4.13 2.23 44.89 0.10 4.23 16 14 H 0.03 1.21 7.72 -2.39 -0.02 1.19 16 15 C -0.10 -3.96 5.24 30.66 0.16 -3.80 16 16 C 0.01 0.36 5.96 30.11 0.18 0.54 16 17 C -0.49 -26.30 5.51 -16.17 -0.09 -26.39 16 18 C 0.02 0.98 5.46 84.65 0.46 1.44 16 19 N -0.93 -55.74 12.73 21.45 0.27 -55.46 16 20 Si 0.94 44.22 27.53 68.60 1.89 46.11 16 21 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.25 -11.26 6.11 99.48 0.61 -10.65 16 24 C -0.03 -1.17 5.60 30.11 0.17 -1.00 16 25 C -0.09 -3.51 5.43 30.66 0.17 -3.35 16 26 C -0.10 -2.25 5.95 31.32 0.19 -2.07 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 31 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 32 H 0.07 1.12 8.05 -2.39 -0.02 1.10 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.42 7.59 -2.39 -0.02 1.40 16 36 H 0.35 8.75 7.70 -89.69 -0.69 8.06 16 37 H 0.05 1.87 8.05 -2.39 -0.02 1.85 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.02 1.36 7.08 -2.38 -0.02 1.35 16 41 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.03 1.46 4.59 -2.39 -0.01 1.45 16 44 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.05 1.70 7.39 -2.38 -0.02 1.68 16 46 H 0.08 1.92 7.92 -2.38 -0.02 1.90 16 47 H 0.06 1.73 6.91 -2.39 -0.02 1.71 16 Total: -1.00 -64.88 362.17 2.88 -62.00 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.15 Total: 14.12 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 3.54 Total: -22.12 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -2.51 Total: -77.91 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.19 Total: -22.20 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.89 Total: 46.11 kcal Total: -64.88 2.88 -62.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257035672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.207 kcal (2) G-P(sol) polarization free energy of solvation -64.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds