Wall clock time and date at job start Tue Mar 31 2020 08:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45193 * 109.47294 * 2 1 4 4 C 1.34223 * 117.00318 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99677 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00472 * 179.97438 * 4 3 2 7 7 H 1.09002 * 110.43514 * 298.91761 * 6 4 3 8 8 C 1.54267 * 110.48496 * 61.45128 * 6 4 3 9 9 C 1.53880 * 106.59901 * 142.29024 * 8 6 4 10 10 C 1.54264 * 106.59886 * 0.02562 * 9 8 6 11 11 H 1.08999 * 110.48704 * 95.19634 * 10 9 8 12 12 N 1.46895 * 110.49162 * 217.71351 * 10 9 8 13 13 C 1.46905 * 110.99858 * 271.76119 * 12 10 9 14 14 H 1.08999 * 109.35465 * 35.17261 * 13 12 10 15 15 C 1.52955 * 109.41303 * 154.99914 * 13 12 10 16 16 C 1.53236 * 109.40158 * 183.70281 * 15 13 12 17 17 C 1.51267 * 108.53381 * 305.36921 * 16 15 13 18 18 C 1.37882 * 120.84502 * 231.36932 * 17 16 15 19 19 N 1.31514 * 120.00448 * 0.02562 * 18 17 16 20 20 Si 1.86799 * 119.99596 * 180.02562 * 18 17 16 21 21 H 1.48501 * 109.47578 * 89.99804 * 20 18 17 22 22 H 1.48497 * 109.47062 * 210.00201 * 20 18 17 23 23 H 1.48508 * 109.47290 * 329.99815 * 20 18 17 24 24 C 1.51263 * 118.30394 * 51.35053 * 17 16 15 25 25 C 1.52965 * 109.40913 * 275.34958 * 13 12 10 26 26 C 1.54897 * 104.31047 * 336.45818 * 10 9 8 27 27 H 1.09000 * 109.47175 * 59.99772 * 1 2 3 28 28 H 1.09000 * 109.47263 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47149 * 299.99935 * 1 2 3 30 30 H 1.08998 * 109.46613 * 239.99583 * 2 1 3 31 31 H 1.09002 * 109.46728 * 119.99945 * 2 1 3 32 32 H 1.08998 * 110.03159 * 23.00769 * 8 6 4 33 33 H 1.08999 * 110.04022 * 261.57302 * 8 6 4 34 34 H 1.08997 * 110.03356 * 240.71624 * 9 8 6 35 35 H 1.08997 * 110.07160 * 119.30801 * 9 8 6 36 36 H 1.00895 * 111.00248 * 147.80173 * 12 10 9 37 37 H 1.08988 * 109.48772 * 63.72333 * 15 13 12 38 38 H 1.09004 * 109.47866 * 303.67506 * 15 13 12 39 39 H 1.09000 * 109.62824 * 65.08814 * 16 15 13 40 40 H 1.09004 * 109.62129 * 185.46159 * 16 15 13 41 41 H 0.96993 * 120.00191 * 180.02562 * 19 18 17 42 42 H 1.09005 * 109.62818 * 68.36240 * 24 17 16 43 43 H 1.08994 * 109.63088 * 188.93762 * 24 17 16 44 44 H 1.08995 * 109.48255 * 56.31837 * 25 13 12 45 45 H 1.09001 * 109.48013 * 296.27241 * 25 13 12 46 46 H 1.09003 * 110.75531 * 156.18964 * 26 10 9 47 47 H 1.09001 * 110.75599 * 279.55387 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9373 -0.0012 7 1 3.6095 3.4775 -0.8953 8 6 3.4894 3.7005 1.2682 9 6 4.6968 4.5504 1.7017 10 6 5.8194 4.2745 0.6802 11 1 5.8181 5.0332 -0.1023 12 7 7.1256 4.2316 1.3509 13 6 7.7228 5.5716 1.4265 14 1 6.9350 6.3105 1.5729 15 6 8.6979 5.6280 2.6037 16 6 9.2507 7.0507 2.7391 17 6 9.8506 7.4617 1.4127 18 6 11.1314 7.9674 1.3424 19 7 11.8482 8.0972 2.4373 20 14 11.8484 8.4683 -0.3082 21 1 11.5366 9.8963 -0.5707 22 1 13.3211 8.2791 -0.2860 23 1 11.2575 7.6275 -1.3803 24 6 9.0096 7.3033 0.1654 25 6 8.4654 5.8715 0.1233 26 6 5.4672 2.8864 0.0899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2269 2.9954 2.0568 33 1 2.6395 4.3456 1.0454 34 1 5.0201 4.2577 2.7006 35 1 4.4333 5.6080 1.6897 36 1 7.7474 3.5840 0.8904 37 1 9.5197 4.9338 2.4287 38 1 8.1771 5.3516 3.5205 39 1 8.4433 7.7337 3.0032 40 1 10.0174 7.0733 3.5136 41 1 12.7490 8.4533 2.3879 42 1 8.1798 8.0097 0.1911 43 1 9.6236 7.4876 -0.7161 44 1 7.7800 5.7677 -0.7178 45 1 9.2928 5.1715 0.0070 46 1 5.9108 2.7630 -0.8981 47 1 5.7873 2.0890 0.7605 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257035674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:56 Heat of formation + Delta-G solvation = -118.350292 kcal Electronic energy + Delta-G solvation = -24179.822046 eV Core-core repulsion = 20746.911075 eV Total energy + Delta-G solvation = -3432.910971 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.85523 -38.66141 -37.08481 -36.42735 -33.58117 -32.10089 -31.29566 -29.60897 -29.11214 -28.09045 -25.71724 -23.89114 -22.33950 -21.82712 -21.22804 -20.30428 -19.87433 -19.14992 -17.81253 -17.01713 -16.59005 -16.13937 -15.79626 -14.85965 -14.58447 -14.35312 -14.21541 -13.74027 -13.46004 -13.24273 -12.98049 -12.88896 -12.39447 -12.31829 -12.20230 -12.12427 -12.03655 -11.80743 -11.40818 -11.40286 -11.08276 -10.98238 -10.89746 -10.82869 -10.72814 -10.63259 -10.38268 -10.28324 -10.11620 -9.78056 -9.49712 -8.83423 -8.71408 -8.44980 -7.78986 -6.06238 -3.96663 2.01780 2.41185 3.27750 3.36096 3.36432 4.21554 4.38546 4.40063 4.41930 4.56607 4.62510 4.84437 4.89872 4.90633 5.20770 5.29319 5.31659 5.34819 5.39162 5.39591 5.47069 5.59284 5.66979 5.73731 5.83473 5.93287 6.01440 6.13872 6.16824 6.23204 6.24486 6.34825 6.54956 6.76422 6.84789 6.91998 6.99315 7.09037 7.24313 7.42192 7.55703 7.63137 7.70560 7.76239 7.91600 7.95904 8.44762 9.01855 9.58182 11.03310 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.040165 B = 0.002676 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.957221 B =10459.642956 C =10695.226519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.470 3.530 5 O -0.506 6.506 6 C -0.086 4.086 7 H 0.112 0.888 8 C -0.107 4.107 9 C -0.115 4.115 10 C 0.083 3.917 11 H 0.052 0.948 12 N -0.683 5.683 13 C 0.100 3.900 14 H 0.065 0.935 15 C -0.093 4.093 16 C 0.009 3.991 17 C -0.484 4.484 18 C 0.074 3.926 19 N -0.891 5.891 20 Si 0.885 3.115 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.266 1.266 24 C -0.018 4.018 25 C -0.133 4.133 26 C -0.109 4.109 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.337 0.663 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.001 0.999 40 H 0.056 0.944 41 H 0.263 0.737 42 H 0.014 0.986 43 H 0.032 0.968 44 H 0.026 0.974 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.249 -12.348 -5.170 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.313 3.687 5 O -0.393 6.393 6 C -0.105 4.105 7 H 0.130 0.870 8 C -0.145 4.145 9 C -0.154 4.154 10 C -0.028 4.028 11 H 0.070 0.930 12 N -0.312 5.312 13 C -0.009 4.009 14 H 0.083 0.917 15 C -0.131 4.131 16 C -0.029 4.029 17 C -0.503 4.503 18 C -0.128 4.128 19 N -0.529 5.529 20 Si 0.714 3.286 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.191 1.191 24 C -0.056 4.056 25 C -0.173 4.173 26 C -0.147 4.147 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.020 0.980 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.050 0.950 44 H 0.045 0.955 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.142 -12.586 -4.445 24.164 hybrid contribution 0.762 0.196 -1.922 2.076 sum -19.380 -12.390 -6.367 23.867 Atomic orbital electron populations 1.21805 0.92608 1.02946 1.03571 1.23022 0.95388 0.80419 1.02585 1.86522 1.24768 1.32203 1.84038 1.23762 0.80355 0.92729 0.71884 1.90669 1.60423 1.43138 1.45097 1.21924 0.97001 0.89433 1.02160 0.87034 1.22065 0.99013 0.98438 0.94947 1.22207 0.93218 0.99294 1.00641 1.22310 0.90972 0.95138 0.94358 0.92969 1.60864 1.03819 1.10805 1.55753 1.21527 0.95846 0.87547 0.95952 0.91721 1.21569 0.96414 1.00500 0.94649 1.19391 0.95947 0.90249 0.97313 1.20052 0.97877 1.40812 0.91577 1.24856 0.96428 0.95236 0.96320 1.69838 1.10406 1.45301 1.27309 0.86705 0.77838 0.79090 0.84947 1.20508 1.21691 1.19118 1.19766 0.96708 0.91863 0.97233 1.22218 0.98326 1.01068 0.95643 1.22656 0.91236 0.98723 1.02055 0.91485 0.90278 0.91398 0.91322 0.91236 0.91428 0.90660 0.90066 0.91663 0.84491 0.93481 0.94585 0.98027 0.92520 0.92682 0.96719 0.94992 0.95504 0.92976 0.90988 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 37.16 0.38 -0.45 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.36 -3.69 10.20 -39.24 -0.40 -4.09 16 4 C 0.47 5.49 7.12 36.00 0.26 5.74 16 5 O -0.51 -7.30 15.51 -18.75 -0.29 -7.60 16 6 C -0.09 -0.88 3.36 -90.06 -0.30 -1.18 16 7 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 8 C -0.11 -1.05 6.35 -25.61 -0.16 -1.21 16 9 C -0.12 -1.38 6.44 -25.61 -0.16 -1.54 16 10 C 0.08 1.09 2.93 -66.05 -0.19 0.89 16 11 H 0.05 0.72 7.16 -51.93 -0.37 0.34 16 12 N -0.68 -10.77 6.04 -98.05 -0.59 -11.36 16 13 C 0.10 1.88 2.23 -67.75 -0.15 1.73 16 14 H 0.06 1.25 7.79 -51.93 -0.40 0.85 16 15 C -0.09 -2.00 5.54 -26.63 -0.15 -2.14 16 16 C 0.01 0.22 5.96 -27.48 -0.16 0.06 16 17 C -0.48 -12.77 5.51 -98.93 -0.55 -13.31 16 18 C 0.07 2.03 5.46 -17.82 -0.10 1.94 16 19 N -0.89 -25.85 12.73 55.43 0.71 -25.14 16 20 Si 0.89 21.20 27.53 -169.99 -4.68 16.51 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.15 6.10 56.52 0.34 -5.81 16 24 C -0.02 -0.41 5.59 -27.49 -0.15 -0.56 16 25 C -0.13 -2.66 5.18 -26.63 -0.14 -2.80 16 26 C -0.11 -1.29 5.31 -24.68 -0.13 -1.42 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.07 0.67 7.83 -51.93 -0.41 0.27 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.07 8.04 -51.93 -0.42 0.66 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.34 5.20 8.19 -39.29 -0.32 4.88 16 37 H 0.05 1.06 8.14 -51.94 -0.42 0.63 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 40 H 0.06 1.56 7.08 -51.93 -0.37 1.20 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.03 0.74 4.59 -51.93 -0.24 0.50 16 44 H 0.03 0.48 7.40 -51.93 -0.38 0.09 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.09 1.20 7.53 -51.93 -0.39 0.81 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -29.54 363.70 -9.67 -39.21 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -8.41 Total: 0.51 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -1.48 Total: -13.53 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.11 Total: -36.50 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -0.69 Total: -11.69 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.68 Total: 16.51 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.54 -9.67 -39.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257035674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.140 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds