Wall clock time and date at job start Tue Mar 31 2020 08:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45193 * 109.47294 * 2 1 4 4 C 1.34223 * 117.00318 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99677 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00472 * 179.97438 * 4 3 2 7 7 H 1.09002 * 110.43514 * 298.91761 * 6 4 3 8 8 C 1.54267 * 110.48496 * 61.45128 * 6 4 3 9 9 C 1.53880 * 106.59901 * 142.29024 * 8 6 4 10 10 C 1.54264 * 106.59886 * 0.02562 * 9 8 6 11 11 H 1.08999 * 110.48704 * 95.19634 * 10 9 8 12 12 N 1.46895 * 110.49162 * 217.71351 * 10 9 8 13 13 C 1.46905 * 110.99858 * 271.76119 * 12 10 9 14 14 H 1.08999 * 109.35465 * 35.17261 * 13 12 10 15 15 C 1.52955 * 109.41303 * 154.99914 * 13 12 10 16 16 C 1.53236 * 109.40158 * 183.70281 * 15 13 12 17 17 C 1.51267 * 108.53381 * 305.36921 * 16 15 13 18 18 C 1.37882 * 120.84502 * 231.36932 * 17 16 15 19 19 N 1.31514 * 120.00448 * 0.02562 * 18 17 16 20 20 Si 1.86799 * 119.99596 * 180.02562 * 18 17 16 21 21 H 1.48501 * 109.47578 * 89.99804 * 20 18 17 22 22 H 1.48497 * 109.47062 * 210.00201 * 20 18 17 23 23 H 1.48508 * 109.47290 * 329.99815 * 20 18 17 24 24 C 1.51263 * 118.30394 * 51.35053 * 17 16 15 25 25 C 1.52965 * 109.40913 * 275.34958 * 13 12 10 26 26 C 1.54897 * 104.31047 * 336.45818 * 10 9 8 27 27 H 1.09000 * 109.47175 * 59.99772 * 1 2 3 28 28 H 1.09000 * 109.47263 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47149 * 299.99935 * 1 2 3 30 30 H 1.08998 * 109.46613 * 239.99583 * 2 1 3 31 31 H 1.09002 * 109.46728 * 119.99945 * 2 1 3 32 32 H 1.08998 * 110.03159 * 23.00769 * 8 6 4 33 33 H 1.08999 * 110.04022 * 261.57302 * 8 6 4 34 34 H 1.08997 * 110.03356 * 240.71624 * 9 8 6 35 35 H 1.08997 * 110.07160 * 119.30801 * 9 8 6 36 36 H 1.00895 * 111.00248 * 147.80173 * 12 10 9 37 37 H 1.08988 * 109.48772 * 63.72333 * 15 13 12 38 38 H 1.09004 * 109.47866 * 303.67506 * 15 13 12 39 39 H 1.09000 * 109.62824 * 65.08814 * 16 15 13 40 40 H 1.09004 * 109.62129 * 185.46159 * 16 15 13 41 41 H 0.96993 * 120.00191 * 180.02562 * 19 18 17 42 42 H 1.09005 * 109.62818 * 68.36240 * 24 17 16 43 43 H 1.08994 * 109.63088 * 188.93762 * 24 17 16 44 44 H 1.08995 * 109.48255 * 56.31837 * 25 13 12 45 45 H 1.09001 * 109.48013 * 296.27241 * 25 13 12 46 46 H 1.09003 * 110.75531 * 156.18964 * 26 10 9 47 47 H 1.09001 * 110.75599 * 279.55387 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9373 -0.0012 7 1 3.6095 3.4775 -0.8953 8 6 3.4894 3.7005 1.2682 9 6 4.6968 4.5504 1.7017 10 6 5.8194 4.2745 0.6802 11 1 5.8181 5.0332 -0.1023 12 7 7.1256 4.2316 1.3509 13 6 7.7228 5.5716 1.4265 14 1 6.9350 6.3105 1.5729 15 6 8.6979 5.6280 2.6037 16 6 9.2507 7.0507 2.7391 17 6 9.8506 7.4617 1.4127 18 6 11.1314 7.9674 1.3424 19 7 11.8482 8.0972 2.4373 20 14 11.8484 8.4683 -0.3082 21 1 11.5366 9.8963 -0.5707 22 1 13.3211 8.2791 -0.2860 23 1 11.2575 7.6275 -1.3803 24 6 9.0096 7.3033 0.1654 25 6 8.4654 5.8715 0.1233 26 6 5.4672 2.8864 0.0899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2269 2.9954 2.0568 33 1 2.6395 4.3456 1.0454 34 1 5.0201 4.2577 2.7006 35 1 4.4333 5.6080 1.6897 36 1 7.7474 3.5840 0.8904 37 1 9.5197 4.9338 2.4287 38 1 8.1771 5.3516 3.5205 39 1 8.4433 7.7337 3.0032 40 1 10.0174 7.0733 3.5136 41 1 12.7490 8.4533 2.3879 42 1 8.1798 8.0097 0.1911 43 1 9.6236 7.4876 -0.7161 44 1 7.7800 5.7677 -0.7178 45 1 9.2928 5.1715 0.0070 46 1 5.9108 2.7630 -0.8981 47 1 5.7873 2.0890 0.7605 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257035674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:55 Heat of formation + Delta-G solvation = -134.689960 kcal Electronic energy + Delta-G solvation = -24180.530587 eV Core-core repulsion = 20746.911075 eV Total energy + Delta-G solvation = -3433.619513 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.73215 -39.84021 -38.34490 -37.49504 -35.19177 -33.18505 -32.52339 -31.42861 -30.01384 -29.48612 -27.16004 -24.62795 -23.60456 -23.11768 -23.02336 -21.35798 -20.93413 -20.64935 -18.69897 -18.06727 -17.84959 -17.38432 -16.69998 -16.42120 -16.01173 -15.87696 -15.02286 -14.83894 -14.70683 -14.49398 -14.29646 -14.07051 -14.01295 -13.74048 -13.51643 -13.07965 -12.91311 -12.81788 -12.71963 -12.69382 -12.49931 -12.27463 -12.11046 -12.08731 -11.90621 -11.82321 -11.58872 -11.52729 -11.51520 -11.32125 -11.19890 -10.72632 -10.56414 -10.52290 -9.15029 -8.14286 -6.08226 1.13638 1.38478 1.40471 1.48822 1.65398 2.41511 3.08614 3.26368 3.44245 3.52350 3.93795 4.00266 4.06610 4.09323 4.14976 4.31005 4.34884 4.39974 4.45752 4.51807 4.54538 4.62131 4.71436 4.77746 4.84924 4.92768 4.93519 5.03950 5.09959 5.11271 5.12361 5.14922 5.16204 5.27964 5.28684 5.31773 5.43374 5.45701 5.49442 5.61388 5.66631 5.81288 5.88750 6.33269 6.38798 6.62179 6.70396 6.99097 7.49124 8.96724 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.040165 B = 0.002676 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.957221 B =10459.642956 C =10695.226519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.358 6.358 4 C 0.472 3.528 5 O -0.540 6.540 6 C -0.081 4.081 7 H 0.137 0.863 8 C -0.098 4.098 9 C -0.114 4.114 10 C 0.082 3.918 11 H 0.057 0.943 12 N -0.684 5.684 13 C 0.115 3.885 14 H 0.065 0.935 15 C -0.083 4.083 16 C 0.006 3.994 17 C -0.494 4.494 18 C 0.015 3.985 19 N -0.935 5.935 20 Si 0.941 3.059 21 H -0.275 1.275 22 H -0.295 1.295 23 H -0.249 1.249 24 C -0.021 4.021 25 C -0.127 4.127 26 C -0.104 4.104 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.340 0.660 37 H 0.032 0.968 38 H 0.044 0.956 39 H -0.002 1.002 40 H 0.020 0.980 41 H 0.261 0.739 42 H 0.021 0.979 43 H 0.032 0.968 44 H 0.056 0.944 45 H 0.043 0.957 46 H 0.078 0.922 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.768 -12.887 -7.216 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.316 3.684 5 O -0.430 6.430 6 C -0.100 4.100 7 H 0.155 0.845 8 C -0.136 4.136 9 C -0.152 4.152 10 C -0.028 4.028 11 H 0.075 0.925 12 N -0.313 5.313 13 C 0.005 3.995 14 H 0.083 0.917 15 C -0.122 4.122 16 C -0.032 4.032 17 C -0.513 4.513 18 C -0.183 4.183 19 N -0.575 5.575 20 Si 0.768 3.232 21 H -0.201 1.201 22 H -0.222 1.222 23 H -0.173 1.173 24 C -0.059 4.059 25 C -0.166 4.166 26 C -0.141 4.141 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.159 0.841 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.017 0.983 40 H 0.039 0.961 41 H 0.070 0.930 42 H 0.040 0.960 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.706 -13.132 -6.505 27.025 hybrid contribution 1.466 0.324 -1.208 1.927 sum -21.240 -12.809 -7.713 25.975 Atomic orbital electron populations 1.21819 0.90343 1.04316 1.03800 1.23282 0.97163 0.79419 1.02380 1.86521 1.23923 1.33476 1.83520 1.24015 0.80602 0.92848 0.70889 1.90660 1.61212 1.44293 1.46827 1.21949 0.95644 0.88939 1.03470 0.84486 1.22011 0.98760 0.98268 0.94552 1.22179 0.93619 1.00001 0.99445 1.22397 0.89641 0.96078 0.94701 0.92472 1.60753 1.04825 1.08922 1.56848 1.21207 0.94968 0.89253 0.94061 0.91716 1.21383 0.96674 0.97433 0.96674 1.19358 0.94914 0.92662 0.96315 1.20681 0.98211 1.39202 0.93199 1.25677 0.97307 0.95882 0.99385 1.69991 1.10733 1.47349 1.29445 0.85796 0.76788 0.79056 0.81561 1.20051 1.22170 1.17309 1.19798 0.96463 0.94180 0.95464 1.22124 0.98693 0.98493 0.97280 1.22546 0.92659 0.97142 1.01799 0.91113 0.88365 0.91245 0.91415 0.91678 0.91770 0.88369 0.91704 0.91152 0.84150 0.94948 0.93769 0.98345 0.96076 0.92998 0.96015 0.94920 0.92506 0.93817 0.90327 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 71.98 0.74 -0.52 16 2 C 0.05 0.75 6.19 71.98 0.45 1.20 16 3 O -0.36 -6.65 10.20 -51.35 -0.52 -7.18 16 4 C 0.47 10.17 7.12 71.23 0.51 10.68 16 5 O -0.54 -15.12 15.51 21.97 0.34 -14.78 16 6 C -0.08 -1.42 3.36 -10.43 -0.04 -1.46 16 7 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 8 C -0.10 -1.64 6.35 31.32 0.20 -1.44 16 9 C -0.11 -2.45 6.44 31.32 0.20 -2.25 16 10 C 0.08 1.93 2.93 45.99 0.13 2.07 16 11 H 0.06 1.35 7.16 -2.39 -0.02 1.33 16 12 N -0.68 -20.33 6.04 -464.12 -2.80 -23.13 16 13 C 0.11 4.12 2.23 44.89 0.10 4.22 16 14 H 0.06 2.36 7.79 -2.39 -0.02 2.34 16 15 C -0.08 -3.58 5.54 30.66 0.17 -3.41 16 16 C 0.01 0.28 5.96 30.11 0.18 0.46 16 17 C -0.49 -26.11 5.51 -16.17 -0.09 -26.20 16 18 C 0.01 0.83 5.46 84.66 0.46 1.29 16 19 N -0.93 -56.04 12.73 21.45 0.27 -55.77 16 20 Si 0.94 43.50 27.53 68.60 1.89 45.39 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.25 -10.69 6.10 99.48 0.61 -10.08 16 24 C -0.02 -0.93 5.59 30.10 0.17 -0.76 16 25 C -0.13 -4.74 5.18 30.66 0.16 -4.58 16 26 C -0.10 -2.22 5.31 31.93 0.17 -2.05 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 31 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 32 H 0.06 1.14 7.83 -2.39 -0.02 1.12 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.62 8.04 -2.39 -0.02 1.60 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 36 H 0.34 9.90 8.19 -89.70 -0.73 9.17 16 37 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H 0.02 1.20 7.08 -2.39 -0.02 1.18 16 41 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.03 1.44 4.59 -2.39 -0.01 1.42 16 44 H 0.06 1.81 7.40 -2.39 -0.02 1.79 16 45 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.07 1.83 7.53 -2.39 -0.02 1.82 16 Total: -1.00 -64.65 363.70 2.79 -61.86 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.11 Total: 16.35 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 3.51 Total: -22.74 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -2.53 Total: -78.90 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.18 Total: -21.96 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.89 Total: 45.39 kcal Total: -64.65 2.79 -61.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257035674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.833 kcal (2) G-P(sol) polarization free energy of solvation -64.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds