Wall clock time and date at job start Tue Mar 31 2020 08:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45195 * 109.47115 * 2 1 4 4 C 1.34236 * 116.99942 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99830 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99948 * 179.97438 * 4 3 2 7 7 H 1.09001 * 110.43355 * 298.91370 * 6 4 3 8 8 C 1.54892 * 110.48796 * 61.45178 * 6 4 3 9 9 C 1.54885 * 102.74740 * 156.61734 * 8 6 4 10 10 C 1.54258 * 104.31775 * 321.99479 * 9 8 6 11 11 H 1.09002 * 110.03282 * 264.38867 * 10 9 8 12 12 N 1.46900 * 110.03442 * 142.95643 * 10 9 8 13 13 C 1.46911 * 110.99577 * 86.45568 * 12 10 9 14 14 H 1.08997 * 109.41077 * 35.00090 * 13 12 10 15 15 C 1.52958 * 109.41062 * 154.85742 * 13 12 10 16 16 C 1.53229 * 109.40189 * 183.70150 * 15 13 12 17 17 C 1.51275 * 108.53784 * 305.37456 * 16 15 13 18 18 C 1.37879 * 120.84656 * 231.32468 * 17 16 15 19 19 N 1.31514 * 120.00334 * 349.18757 * 18 17 16 20 20 Si 1.86801 * 119.99570 * 169.19138 * 18 17 16 21 21 H 1.48500 * 109.47050 * 354.65554 * 20 18 17 22 22 H 1.48500 * 109.47171 * 114.65835 * 20 18 17 23 23 H 1.48500 * 109.46602 * 234.65890 * 20 18 17 24 24 C 1.51260 * 118.29835 * 51.34719 * 17 16 15 25 25 C 1.52955 * 109.40963 * 275.14073 * 13 12 10 26 26 C 1.54221 * 106.42874 * 23.64130 * 10 9 8 27 27 H 1.08999 * 109.46912 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46806 * 300.00097 * 1 2 3 29 29 H 1.08993 * 109.47081 * 60.00318 * 1 2 3 30 30 H 1.08998 * 109.47322 * 239.99907 * 2 1 3 31 31 H 1.09001 * 109.46916 * 119.99908 * 2 1 3 32 32 H 1.09004 * 110.75391 * 38.30285 * 8 6 4 33 33 H 1.08999 * 110.91197 * 275.01094 * 8 6 4 34 34 H 1.09002 * 110.48454 * 80.73881 * 9 8 6 35 35 H 1.09003 * 110.48733 * 203.24591 * 9 8 6 36 36 H 1.00901 * 111.00217 * 210.40706 * 12 10 9 37 37 H 1.09001 * 109.48689 * 303.68470 * 15 13 12 38 38 H 1.09004 * 109.48229 * 63.71518 * 15 13 12 39 39 H 1.09002 * 109.62497 * 65.08951 * 16 15 13 40 40 H 1.09006 * 109.62497 * 185.46827 * 16 15 13 41 41 H 0.96996 * 119.99813 * 180.02562 * 19 18 17 42 42 H 1.09004 * 109.63042 * 68.36824 * 24 17 16 43 43 H 1.09000 * 109.62322 * 188.74326 * 24 17 16 44 44 H 1.08996 * 109.48573 * 296.27545 * 25 13 12 45 45 H 1.08999 * 109.48470 * 56.31859 * 25 13 12 46 46 H 1.08998 * 110.00379 * 240.69580 * 26 10 9 47 47 H 1.08994 * 110.02727 * 119.28161 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 1 3.6096 3.4775 -0.8953 8 6 3.4877 3.7037 1.2733 9 6 4.5896 4.7831 1.4140 10 6 5.8867 4.0609 0.9953 11 1 6.4070 3.6866 1.8770 12 7 6.7565 4.9805 0.2497 13 6 7.6044 5.7594 1.1622 14 1 7.8815 5.1409 2.0158 15 6 8.8686 6.2050 0.4255 16 6 9.7950 6.9377 1.4016 17 6 9.0193 8.0649 2.0467 18 6 9.5197 9.3496 2.0613 19 7 10.7658 9.5741 1.7059 20 14 8.4274 10.7713 2.5860 21 1 7.0452 10.2770 2.8103 22 1 8.9526 11.3610 3.8436 23 1 8.4163 11.8061 1.5209 24 6 7.6810 7.7464 2.6756 25 6 6.8318 6.9853 1.6519 26 6 5.4597 2.8851 0.0933 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.4827 3.0416 2.1392 33 1 2.5098 4.1653 1.1363 34 1 4.3884 5.6225 0.7484 35 1 4.6594 5.1247 2.4468 36 1 7.3155 4.4815 -0.4260 37 1 9.3819 5.3316 0.0232 38 1 8.5969 6.8749 -0.3903 39 1 10.1401 6.2447 2.1690 40 1 10.6512 7.3411 0.8609 41 1 11.1178 10.4779 1.7166 42 1 7.8303 7.1283 3.5610 43 1 7.1787 8.6722 2.9561 44 1 6.6094 7.6364 0.8066 45 1 5.9006 6.6654 2.1194 46 1 5.7746 1.9409 0.5376 47 1 5.8986 2.9967 -0.8981 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257035678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:07 Heat of formation + Delta-G solvation = -113.225909 kcal Electronic energy + Delta-G solvation = -24274.145555 eV Core-core repulsion = 20841.456794 eV Total energy + Delta-G solvation = -3432.688762 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.86452 -38.69979 -37.05681 -36.36519 -33.55505 -32.09265 -31.32412 -29.78320 -28.97361 -28.02935 -25.76518 -23.95090 -22.42686 -21.50749 -21.34559 -20.45191 -19.71446 -18.99774 -18.01809 -16.88396 -16.71049 -16.08555 -15.51863 -14.77795 -14.76584 -14.42272 -14.21866 -13.85270 -13.49744 -13.24432 -13.18124 -12.70289 -12.40312 -12.33524 -12.25007 -12.05508 -11.96607 -11.73083 -11.33959 -11.25246 -11.13766 -10.96592 -10.83538 -10.83087 -10.75843 -10.55606 -10.40804 -10.31270 -9.98613 -9.87965 -9.30260 -8.83825 -8.56112 -8.35123 -7.93211 -6.06678 -3.94368 2.01317 2.42266 3.29380 3.39513 3.40002 4.28064 4.38337 4.42921 4.52577 4.56021 4.58524 4.65577 4.89873 5.05506 5.22012 5.26664 5.36806 5.38192 5.39709 5.43879 5.51647 5.59862 5.72607 5.74842 5.85756 5.96385 6.00356 6.08582 6.17975 6.23847 6.31545 6.39162 6.61966 6.76958 6.86129 6.92469 7.03684 7.10735 7.22772 7.52901 7.55309 7.64129 7.72815 7.80810 7.86323 7.92488 8.44857 9.01855 9.60045 11.03204 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.037137 B = 0.002797 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.787504 B =10009.128160 C =10569.933952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.469 3.531 5 O -0.510 6.510 6 C -0.082 4.082 7 H 0.115 0.885 8 C -0.110 4.110 9 C -0.112 4.112 10 C 0.085 3.915 11 H 0.047 0.953 12 N -0.684 5.684 13 C 0.100 3.900 14 H 0.031 0.969 15 C -0.110 4.110 16 C 0.013 3.987 17 C -0.483 4.483 18 C 0.074 3.926 19 N -0.889 5.889 20 Si 0.878 3.122 21 H -0.255 1.255 22 H -0.285 1.285 23 H -0.286 1.286 24 C -0.028 4.028 25 C -0.094 4.094 26 C -0.114 4.114 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.334 0.666 37 H 0.026 0.974 38 H 0.056 0.944 39 H 0.001 0.999 40 H 0.053 0.947 41 H 0.262 0.738 42 H 0.012 0.988 43 H 0.040 0.960 44 H 0.054 0.946 45 H 0.034 0.966 46 H 0.081 0.919 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.163 -15.423 -3.412 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.312 3.688 5 O -0.398 6.398 6 C -0.101 4.101 7 H 0.133 0.867 8 C -0.148 4.148 9 C -0.150 4.150 10 C -0.026 4.026 11 H 0.065 0.935 12 N -0.316 5.316 13 C -0.008 4.008 14 H 0.049 0.951 15 C -0.148 4.148 16 C -0.025 4.025 17 C -0.502 4.502 18 C -0.128 4.128 19 N -0.527 5.527 20 Si 0.706 3.294 21 H -0.180 1.180 22 H -0.211 1.211 23 H -0.213 1.213 24 C -0.066 4.066 25 C -0.132 4.132 26 C -0.152 4.152 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.153 0.847 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.019 0.981 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.052 0.948 46 H 0.099 0.901 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.291 -15.118 -3.495 23.986 hybrid contribution 0.206 -0.105 0.436 0.493 sum -18.085 -15.223 -3.059 23.836 Atomic orbital electron populations 1.21803 0.92595 1.02933 1.03611 1.23022 0.95416 0.80451 1.02534 1.86532 1.24726 1.32146 1.83966 1.23859 0.80354 0.92876 0.71678 1.90650 1.60405 1.43244 1.45451 1.21896 0.96701 0.89061 1.02480 0.86669 1.22495 0.99853 0.97460 0.95021 1.22536 0.92674 0.97749 1.02061 1.22224 0.94689 0.90775 0.94877 0.93510 1.60828 1.25770 1.27204 1.17769 1.21516 0.92313 0.94184 0.92798 0.95081 1.21831 0.95259 0.98150 0.99563 1.19329 0.95341 0.93998 0.93797 1.20031 1.01605 0.93094 1.35518 1.24857 0.94695 0.98290 0.94970 1.69904 1.13474 1.21117 1.48206 0.86757 0.82171 0.82243 0.78184 1.18009 1.21093 1.21283 1.19988 0.95469 0.96590 0.94532 1.21623 0.96474 0.95725 0.99368 1.22427 0.91911 0.99455 1.01400 0.90296 0.91403 0.91434 0.91320 0.91301 0.91398 0.90253 0.89618 0.91241 0.84723 0.95551 0.92503 0.98075 0.92842 0.92782 0.96954 0.94211 0.92768 0.94782 0.90066 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.16 0.38 -0.45 16 2 C 0.06 0.48 6.19 37.16 0.23 0.71 16 3 O -0.36 -3.70 10.20 -39.27 -0.40 -4.10 16 4 C 0.47 5.47 7.25 36.01 0.26 5.73 16 5 O -0.51 -7.25 15.21 -18.75 -0.29 -7.54 16 6 C -0.08 -0.86 3.36 -90.11 -0.30 -1.16 16 7 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 8 C -0.11 -1.11 6.30 -24.74 -0.16 -1.27 16 9 C -0.11 -1.38 4.81 -25.08 -0.12 -1.50 16 10 C 0.08 1.13 3.25 -66.42 -0.22 0.92 16 11 H 0.05 0.68 7.46 -51.93 -0.39 0.29 16 12 N -0.68 -10.61 6.11 -98.42 -0.60 -11.22 16 13 C 0.10 1.90 2.39 -67.75 -0.16 1.74 16 14 H 0.03 0.62 7.44 -51.93 -0.39 0.23 16 15 C -0.11 -2.31 5.24 -26.63 -0.14 -2.44 16 16 C 0.01 0.33 5.92 -27.48 -0.16 0.17 16 17 C -0.48 -12.80 5.48 -98.92 -0.54 -13.34 16 18 C 0.07 2.04 5.44 -17.82 -0.10 1.95 16 19 N -0.89 -25.87 12.83 55.43 0.71 -25.15 16 20 Si 0.88 20.95 27.95 -169.99 -4.75 16.20 16 21 H -0.26 -5.80 5.57 56.52 0.32 -5.49 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 C -0.03 -0.65 5.66 -27.48 -0.16 -0.81 16 25 C -0.09 -1.90 5.29 -26.63 -0.14 -2.04 16 26 C -0.11 -1.34 5.85 -25.43 -0.15 -1.49 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.13 8.03 -51.93 -0.42 0.71 16 35 H 0.07 0.88 7.37 -51.93 -0.38 0.50 16 36 H 0.33 4.85 7.62 -39.29 -0.30 4.55 16 37 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 40 H 0.05 1.47 7.20 -51.93 -0.37 1.09 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.04 0.93 4.35 -51.93 -0.23 0.70 16 44 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.03 0.62 5.64 -51.93 -0.29 0.32 16 46 H 0.08 1.03 6.91 -51.93 -0.36 0.67 16 47 H 0.08 0.89 7.51 -51.93 -0.39 0.50 16 LS Contribution 358.30 15.07 5.40 5.40 Total: -1.00 -29.62 358.30 -9.62 -39.24 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.22 Total: 0.44 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.47 Total: -13.28 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.11 Total: -36.37 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.69 Total: -11.64 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.75 Total: 16.20 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.62 -9.62 -39.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257035678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.983 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds