Wall clock time and date at job start Tue Mar 31 2020 08:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45195 * 109.47115 * 2 1 4 4 C 1.34236 * 116.99942 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99830 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99948 * 179.97438 * 4 3 2 7 7 H 1.09001 * 110.43355 * 298.91370 * 6 4 3 8 8 C 1.54892 * 110.48796 * 61.45178 * 6 4 3 9 9 C 1.54885 * 102.74740 * 156.61734 * 8 6 4 10 10 C 1.54258 * 104.31775 * 321.99479 * 9 8 6 11 11 H 1.09002 * 110.03282 * 264.38867 * 10 9 8 12 12 N 1.46900 * 110.03442 * 142.95643 * 10 9 8 13 13 C 1.46911 * 110.99577 * 86.45568 * 12 10 9 14 14 H 1.08997 * 109.41077 * 35.00090 * 13 12 10 15 15 C 1.52958 * 109.41062 * 154.85742 * 13 12 10 16 16 C 1.53229 * 109.40189 * 183.70150 * 15 13 12 17 17 C 1.51275 * 108.53784 * 305.37456 * 16 15 13 18 18 C 1.37879 * 120.84656 * 231.32468 * 17 16 15 19 19 N 1.31514 * 120.00334 * 349.18757 * 18 17 16 20 20 Si 1.86801 * 119.99570 * 169.19138 * 18 17 16 21 21 H 1.48500 * 109.47050 * 354.65554 * 20 18 17 22 22 H 1.48500 * 109.47171 * 114.65835 * 20 18 17 23 23 H 1.48500 * 109.46602 * 234.65890 * 20 18 17 24 24 C 1.51260 * 118.29835 * 51.34719 * 17 16 15 25 25 C 1.52955 * 109.40963 * 275.14073 * 13 12 10 26 26 C 1.54221 * 106.42874 * 23.64130 * 10 9 8 27 27 H 1.08999 * 109.46912 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46806 * 300.00097 * 1 2 3 29 29 H 1.08993 * 109.47081 * 60.00318 * 1 2 3 30 30 H 1.08998 * 109.47322 * 239.99907 * 2 1 3 31 31 H 1.09001 * 109.46916 * 119.99908 * 2 1 3 32 32 H 1.09004 * 110.75391 * 38.30285 * 8 6 4 33 33 H 1.08999 * 110.91197 * 275.01094 * 8 6 4 34 34 H 1.09002 * 110.48454 * 80.73881 * 9 8 6 35 35 H 1.09003 * 110.48733 * 203.24591 * 9 8 6 36 36 H 1.00901 * 111.00217 * 210.40706 * 12 10 9 37 37 H 1.09001 * 109.48689 * 303.68470 * 15 13 12 38 38 H 1.09004 * 109.48229 * 63.71518 * 15 13 12 39 39 H 1.09002 * 109.62497 * 65.08951 * 16 15 13 40 40 H 1.09006 * 109.62497 * 185.46827 * 16 15 13 41 41 H 0.96996 * 119.99813 * 180.02562 * 19 18 17 42 42 H 1.09004 * 109.63042 * 68.36824 * 24 17 16 43 43 H 1.09000 * 109.62322 * 188.74326 * 24 17 16 44 44 H 1.08996 * 109.48573 * 296.27545 * 25 13 12 45 45 H 1.08999 * 109.48470 * 56.31859 * 25 13 12 46 46 H 1.08998 * 110.00379 * 240.69580 * 26 10 9 47 47 H 1.08994 * 110.02727 * 119.28161 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 1 3.6096 3.4775 -0.8953 8 6 3.4877 3.7037 1.2733 9 6 4.5896 4.7831 1.4140 10 6 5.8867 4.0609 0.9953 11 1 6.4070 3.6866 1.8770 12 7 6.7565 4.9805 0.2497 13 6 7.6044 5.7594 1.1622 14 1 7.8815 5.1409 2.0158 15 6 8.8686 6.2050 0.4255 16 6 9.7950 6.9377 1.4016 17 6 9.0193 8.0649 2.0467 18 6 9.5197 9.3496 2.0613 19 7 10.7658 9.5741 1.7059 20 14 8.4274 10.7713 2.5860 21 1 7.0452 10.2770 2.8103 22 1 8.9526 11.3610 3.8436 23 1 8.4163 11.8061 1.5209 24 6 7.6810 7.7464 2.6756 25 6 6.8318 6.9853 1.6519 26 6 5.4597 2.8851 0.0933 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.4827 3.0416 2.1392 33 1 2.5098 4.1653 1.1363 34 1 4.3884 5.6225 0.7484 35 1 4.6594 5.1247 2.4468 36 1 7.3155 4.4815 -0.4260 37 1 9.3819 5.3316 0.0232 38 1 8.5969 6.8749 -0.3903 39 1 10.1401 6.2447 2.1690 40 1 10.6512 7.3411 0.8609 41 1 11.1178 10.4779 1.7166 42 1 7.8303 7.1283 3.5610 43 1 7.1787 8.6722 2.9561 44 1 6.6094 7.6364 0.8066 45 1 5.9006 6.6654 2.1194 46 1 5.7746 1.9409 0.5376 47 1 5.8986 2.9967 -0.8981 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257035678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:06 Heat of formation + Delta-G solvation = -129.687440 kcal Electronic energy + Delta-G solvation = -24274.859381 eV Core-core repulsion = 20841.456794 eV Total energy + Delta-G solvation = -3433.402587 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74491 -39.88149 -38.29499 -37.48290 -35.15275 -33.20630 -32.54336 -31.49722 -29.97101 -29.47493 -27.20969 -24.72210 -23.46275 -23.30212 -22.85673 -21.40087 -20.97133 -20.43693 -18.89450 -18.03790 -17.70820 -17.49880 -16.58085 -16.41661 -16.11417 -15.74504 -15.16078 -14.98073 -14.78842 -14.40761 -14.26504 -14.17991 -13.94398 -13.81243 -13.51671 -13.07290 -12.88076 -12.82387 -12.57254 -12.49529 -12.42544 -12.31723 -12.18752 -11.99483 -11.89864 -11.76500 -11.68890 -11.53070 -11.50040 -11.32327 -11.17683 -10.66500 -10.52698 -10.33058 -9.26327 -8.15246 -6.06699 1.13046 1.39689 1.44307 1.53080 1.66247 2.44312 3.07650 3.30618 3.45991 3.50489 3.77778 4.00273 4.08373 4.17300 4.25660 4.26063 4.35536 4.42849 4.44457 4.54036 4.56549 4.62639 4.78076 4.83421 4.86572 4.89957 4.93075 5.03255 5.07312 5.09037 5.13343 5.16273 5.19487 5.24243 5.30222 5.37099 5.40491 5.46737 5.47966 5.64379 5.68676 5.82096 5.92760 6.31659 6.40222 6.62466 6.70026 6.98711 7.50320 8.96195 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.037137 B = 0.002797 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.787504 B =10009.128160 C =10569.933952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.357 6.357 4 C 0.472 3.528 5 O -0.541 6.541 6 C -0.078 4.078 7 H 0.133 0.867 8 C -0.100 4.100 9 C -0.111 4.111 10 C 0.083 3.917 11 H 0.037 0.963 12 N -0.678 5.678 13 C 0.112 3.888 14 H 0.023 0.977 15 C -0.099 4.099 16 C 0.009 3.991 17 C -0.495 4.495 18 C 0.016 3.984 19 N -0.934 5.934 20 Si 0.934 3.066 21 H -0.233 1.233 22 H -0.285 1.285 23 H -0.289 1.289 24 C -0.030 4.030 25 C -0.087 4.087 26 C -0.107 4.107 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.342 0.658 37 H 0.046 0.954 38 H 0.046 0.954 39 H -0.008 1.008 40 H 0.020 0.980 41 H 0.261 0.739 42 H 0.013 0.987 43 H 0.042 0.958 44 H 0.044 0.956 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.314 -16.184 -3.544 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.317 3.683 5 O -0.431 6.431 6 C -0.097 4.097 7 H 0.151 0.849 8 C -0.138 4.138 9 C -0.149 4.149 10 C -0.027 4.027 11 H 0.055 0.945 12 N -0.310 5.310 13 C 0.003 3.997 14 H 0.041 0.959 15 C -0.138 4.138 16 C -0.029 4.029 17 C -0.514 4.514 18 C -0.182 4.182 19 N -0.574 5.574 20 Si 0.761 3.239 21 H -0.157 1.157 22 H -0.212 1.212 23 H -0.215 1.215 24 C -0.068 4.068 25 C -0.125 4.125 26 C -0.145 4.145 27 H 0.117 0.883 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.161 0.839 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.010 0.990 40 H 0.038 0.962 41 H 0.070 0.930 42 H 0.031 0.969 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.482 -15.897 -3.625 26.969 hybrid contribution 1.218 0.018 0.479 1.309 sum -20.264 -15.879 -3.146 25.936 Atomic orbital electron populations 1.21818 0.90397 1.04311 1.03790 1.23286 0.97139 0.79403 1.02409 1.86529 1.23888 1.33490 1.83466 1.24030 0.80611 0.92870 0.70784 1.90643 1.61143 1.44275 1.47040 1.21905 0.95582 0.88710 1.03544 0.84903 1.22437 0.99972 0.96643 0.94731 1.22488 0.92628 0.98133 1.01643 1.22288 0.94699 0.91083 0.94628 0.94542 1.60756 1.25101 1.27944 1.17189 1.21232 0.91573 0.94162 0.92778 0.95871 1.21634 0.95709 0.98207 0.98224 1.19307 0.95269 0.94153 0.94194 1.20663 1.02850 0.93309 1.34587 1.25689 0.95762 1.01075 0.95657 1.70045 1.15330 1.21449 1.50587 0.85857 0.81547 0.79060 0.77479 1.15683 1.21156 1.21543 1.20008 0.94373 0.97226 0.95180 1.21504 0.97090 0.95642 0.98254 1.22307 0.93096 0.98023 1.01117 0.88346 0.91232 0.91182 0.91433 0.91556 0.91347 0.88307 0.90001 0.91560 0.83907 0.93517 0.93563 0.99005 0.96167 0.93003 0.96860 0.93978 0.93684 0.92127 0.91134 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 71.98 0.74 -0.52 16 2 C 0.05 0.74 6.19 71.98 0.45 1.19 16 3 O -0.36 -6.65 10.20 -51.48 -0.53 -7.17 16 4 C 0.47 10.13 7.25 71.24 0.52 10.64 16 5 O -0.54 -14.80 15.21 21.96 0.33 -14.47 16 6 C -0.08 -1.43 3.36 -10.46 -0.04 -1.47 16 7 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 8 C -0.10 -1.70 6.30 31.88 0.20 -1.50 16 9 C -0.11 -2.40 4.81 31.66 0.15 -2.25 16 10 C 0.08 2.04 3.25 45.76 0.15 2.19 16 11 H 0.04 1.00 7.46 -2.39 -0.02 0.98 16 12 N -0.68 -19.57 6.11 -465.30 -2.84 -22.41 16 13 C 0.11 4.07 2.39 44.88 0.11 4.18 16 14 H 0.02 0.90 7.44 -2.39 -0.02 0.88 16 15 C -0.10 -4.14 5.24 30.66 0.16 -3.98 16 16 C 0.01 0.45 5.92 30.11 0.18 0.63 16 17 C -0.49 -26.37 5.48 -16.17 -0.09 -26.46 16 18 C 0.02 0.88 5.44 84.66 0.46 1.34 16 19 N -0.93 -56.06 12.83 21.45 0.28 -55.79 16 20 Si 0.93 43.05 27.95 68.60 1.92 44.96 16 21 H -0.23 -9.80 5.57 99.48 0.55 -9.24 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 24 C -0.03 -1.36 5.66 30.11 0.17 -1.19 16 25 C -0.09 -3.34 5.29 30.66 0.16 -3.18 16 26 C -0.11 -2.30 5.85 31.44 0.18 -2.12 16 27 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.99 8.13 -2.39 -0.02 0.98 16 31 H 0.07 1.00 8.13 -2.39 -0.02 0.98 16 32 H 0.07 1.18 8.05 -2.39 -0.02 1.16 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.88 8.03 -2.39 -0.02 1.86 16 35 H 0.07 1.49 7.37 -2.39 -0.02 1.47 16 36 H 0.34 9.17 7.62 -89.69 -0.68 8.48 16 37 H 0.05 1.73 8.05 -2.39 -0.02 1.71 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.02 1.14 7.20 -2.38 -0.02 1.12 16 41 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.04 1.87 4.35 -2.39 -0.01 1.86 16 44 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.06 2.02 5.64 -2.39 -0.01 2.01 16 46 H 0.07 1.70 6.91 -2.39 -0.02 1.68 16 47 H 0.08 1.72 7.51 -2.39 -0.02 1.70 16 Total: -1.00 -64.59 358.30 2.78 -61.81 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.11 Total: 15.56 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 3.50 Total: -22.49 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -2.57 Total: -78.20 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.19 Total: -21.64 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.92 Total: 44.96 kcal Total: -64.59 2.78 -61.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257035678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.876 kcal (2) G-P(sol) polarization free energy of solvation -64.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds