Wall clock time and date at job start Tue Mar 31 2020 08:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45201 * 109.46999 * 2 1 4 4 C 1.34228 * 116.99708 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00291 * 0.02562 * 4 3 2 6 6 C 1.50712 * 119.99864 * 180.02562 * 4 3 2 7 7 H 1.08996 * 110.43424 * 57.45564 * 6 4 3 8 8 C 1.54889 * 110.59496 * 294.83947 * 6 4 3 9 9 C 1.54885 * 102.74713 * 203.31981 * 8 6 4 10 10 C 1.54374 * 104.19642 * 37.97318 * 9 8 6 11 11 H 1.09006 * 110.06777 * 95.62176 * 10 9 8 12 12 N 1.46901 * 110.04828 * 217.08990 * 10 9 8 13 13 C 1.46904 * 110.99651 * 272.10851 * 12 10 9 14 14 H 1.08998 * 109.41709 * 35.14140 * 13 12 10 15 15 C 1.52958 * 109.41322 * 155.00367 * 13 12 10 16 16 C 1.53224 * 109.40384 * 183.70598 * 15 13 12 17 17 C 1.51261 * 108.53751 * 305.36494 * 16 15 13 18 18 C 1.37881 * 120.85364 * 231.37134 * 17 16 15 19 19 N 1.31511 * 119.99789 * 349.11052 * 18 17 16 20 20 Si 1.86803 * 119.99845 * 169.10656 * 18 17 16 21 21 H 1.48495 * 109.47347 * 354.66260 * 20 18 17 22 22 H 1.48507 * 109.46631 * 114.66442 * 20 18 17 23 23 H 1.48501 * 109.46768 * 234.65833 * 20 18 17 24 24 C 1.51272 * 118.29898 * 51.35433 * 17 16 15 25 25 C 1.52965 * 109.41431 * 275.35351 * 13 12 10 26 26 C 1.53875 * 106.54570 * 336.35084 * 10 9 8 27 27 H 1.09006 * 109.47204 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47541 * 299.99984 * 1 2 3 29 29 H 1.09006 * 109.47037 * 60.00051 * 1 2 3 30 30 H 1.09001 * 109.47541 * 240.00016 * 2 1 3 31 31 H 1.09006 * 109.47037 * 119.99949 * 2 1 3 32 32 H 1.08997 * 110.75980 * 321.63958 * 8 6 4 33 33 H 1.09007 * 110.75129 * 85.01072 * 8 6 4 34 34 H 1.09001 * 110.48407 * 156.62145 * 9 8 6 35 35 H 1.08994 * 110.49233 * 279.13557 * 9 8 6 36 36 H 1.00891 * 110.99834 * 36.06028 * 12 10 9 37 37 H 1.09005 * 109.47624 * 303.68232 * 15 13 12 38 38 H 1.08996 * 109.48257 * 63.71799 * 15 13 12 39 39 H 1.09000 * 109.62869 * 65.08559 * 16 15 13 40 40 H 1.09003 * 109.62292 * 185.46272 * 16 15 13 41 41 H 0.97004 * 120.00075 * 180.02562 * 19 18 17 42 42 H 1.08994 * 109.62858 * 68.36151 * 24 17 16 43 43 H 1.09004 * 109.62734 * 188.74528 * 24 17 16 44 44 H 1.09004 * 109.47709 * 296.27581 * 25 13 12 45 45 H 1.08996 * 109.48219 * 56.31770 * 25 13 12 46 46 H 1.09000 * 110.03169 * 240.72625 * 26 10 9 47 47 H 1.09000 * 110.03355 * 119.34577 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.5581 3.4989 0.8622 8 6 3.5666 3.6742 -1.3145 9 6 4.6757 4.7509 -1.4125 10 6 5.9435 4.0364 -0.8974 11 1 6.5169 3.6412 -1.7361 12 7 6.7675 4.9712 -0.1196 13 6 7.6963 5.7042 -0.9903 14 1 7.2178 5.8959 -1.9507 15 6 8.0672 7.0344 -0.3325 16 6 8.9619 7.8393 -1.2810 17 6 10.1475 6.9827 -1.6664 18 6 11.4350 7.4600 -1.5418 19 7 11.6425 8.7342 -1.2906 20 14 12.8846 6.2969 -1.7296 21 1 12.3871 4.9057 -1.8780 22 1 13.6684 6.6734 -2.9335 23 1 13.7508 6.3874 -0.5268 24 6 9.8845 5.5887 -2.1916 25 6 8.9564 4.8654 -1.2102 26 6 5.4624 2.8840 0.0017 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.6138 2.9925 -2.1637 33 1 2.5828 4.1383 -1.2446 34 1 4.8101 5.0670 -2.4470 35 1 4.4340 5.6061 -0.7816 36 1 6.1905 5.6070 0.4103 37 1 7.1601 7.6005 -0.1206 38 1 8.6024 6.8433 0.5976 39 1 8.3991 8.1089 -2.1747 40 1 9.3074 8.7432 -0.7794 41 1 12.5483 9.0701 -1.2033 42 1 9.4071 5.6499 -3.1695 43 1 10.8260 5.0460 -2.2772 44 1 9.4705 4.7257 -0.2592 45 1 8.6795 3.8941 -1.6202 46 1 5.8404 3.0185 1.0152 47 1 5.8031 1.9298 -0.4000 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257035679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:10 Heat of formation + Delta-G solvation = -114.894195 kcal Electronic energy + Delta-G solvation = -24201.635211 eV Core-core repulsion = 20768.874107 eV Total energy + Delta-G solvation = -3432.761104 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85989 -38.74276 -37.06217 -36.40076 -33.53570 -32.09998 -31.30724 -29.65597 -29.06108 -28.02526 -25.80914 -23.88488 -22.29317 -21.75388 -21.40552 -20.56942 -19.52531 -19.08524 -18.03212 -16.86419 -16.72415 -16.08038 -15.61727 -15.13291 -14.43946 -14.37740 -14.09255 -13.65419 -13.36943 -13.34936 -13.19332 -12.69980 -12.54678 -12.38940 -12.17658 -12.00106 -11.97288 -11.88045 -11.72705 -11.28771 -11.09260 -10.98192 -10.88921 -10.82515 -10.67844 -10.52577 -10.43157 -10.30617 -10.06063 -9.90266 -9.30662 -8.86175 -8.56703 -8.35444 -7.87992 -6.06944 -3.94634 2.02473 2.42694 3.29926 3.40142 3.41402 4.23918 4.36557 4.43280 4.53112 4.56804 4.61211 4.65413 4.90129 5.02294 5.19732 5.22353 5.32622 5.36261 5.39197 5.41329 5.50800 5.56237 5.59097 5.72716 5.85031 5.90271 6.01666 6.05844 6.17576 6.20980 6.29010 6.37180 6.60804 6.75062 6.85016 6.92658 7.02912 7.10114 7.23472 7.52597 7.57001 7.63057 7.72259 7.80402 7.87039 7.92779 8.44527 9.01535 9.59963 11.02841 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.038367 B = 0.002730 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.617214 B =10252.209938 C =10689.822529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.358 6.358 4 C 0.469 3.531 5 O -0.506 6.506 6 C -0.088 4.088 7 H 0.111 0.889 8 C -0.106 4.106 9 C -0.152 4.152 10 C 0.086 3.914 11 H 0.083 0.917 12 N -0.684 5.684 13 C 0.101 3.899 14 H 0.032 0.968 15 C -0.109 4.109 16 C 0.014 3.986 17 C -0.484 4.484 18 C 0.075 3.925 19 N -0.889 5.889 20 Si 0.878 3.122 21 H -0.255 1.255 22 H -0.284 1.284 23 H -0.286 1.286 24 C -0.027 4.027 25 C -0.092 4.092 26 C -0.105 4.105 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.334 0.666 37 H 0.026 0.974 38 H 0.056 0.944 39 H 0.001 0.999 40 H 0.053 0.947 41 H 0.262 0.738 42 H 0.012 0.988 43 H 0.040 0.960 44 H 0.055 0.945 45 H 0.027 0.973 46 H 0.084 0.916 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.692 -12.782 2.307 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.312 3.688 5 O -0.393 6.393 6 C -0.107 4.107 7 H 0.129 0.871 8 C -0.144 4.144 9 C -0.191 4.191 10 C -0.025 4.025 11 H 0.101 0.899 12 N -0.314 5.314 13 C -0.007 4.007 14 H 0.050 0.950 15 C -0.147 4.147 16 C -0.024 4.024 17 C -0.503 4.503 18 C -0.128 4.128 19 N -0.527 5.527 20 Si 0.706 3.294 21 H -0.180 1.180 22 H -0.211 1.211 23 H -0.213 1.213 24 C -0.065 4.065 25 C -0.130 4.130 26 C -0.143 4.143 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.152 0.848 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.019 0.981 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.031 0.969 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.103 0.897 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.868 -13.432 2.526 24.115 hybrid contribution 0.182 -0.127 -0.448 0.499 sum -19.686 -13.559 2.078 23.994 Atomic orbital electron populations 1.21804 0.92628 1.02942 1.03552 1.23022 0.95374 0.80455 1.02587 1.86525 1.24811 1.32175 1.84054 1.23803 0.80304 0.92875 0.71834 1.90661 1.60345 1.43160 1.45141 1.22002 0.97725 0.89315 1.01703 0.87083 1.22395 0.99482 0.97479 0.95078 1.23181 0.95645 0.97924 1.02391 1.22216 0.92110 0.92928 0.95262 0.89864 1.60754 1.20928 1.22509 1.27221 1.21440 0.92411 0.93577 0.93302 0.94987 1.21819 0.98071 0.94371 1.00459 1.19322 0.93173 0.96233 0.93697 1.20023 0.91191 0.97101 1.41952 1.24852 0.98295 0.94822 0.94805 1.69902 1.21234 1.12800 1.48730 0.86762 0.82403 0.82583 0.77651 1.18019 1.21072 1.21257 1.19981 0.96041 0.95927 0.94559 1.21555 0.95376 0.95746 1.00351 1.22248 0.89964 0.99721 1.02406 0.90284 0.91460 0.91449 0.91281 0.91282 0.91079 0.90458 0.91057 0.90967 0.84755 0.95537 0.92516 0.98058 0.92840 0.92772 0.96917 0.94188 0.92654 0.95415 0.89692 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 37.15 0.38 -0.44 16 2 C 0.06 0.48 6.19 37.15 0.23 0.71 16 3 O -0.36 -3.69 10.22 -39.25 -0.40 -4.09 16 4 C 0.47 5.49 7.26 36.01 0.26 5.75 16 5 O -0.51 -7.35 15.17 -18.75 -0.28 -7.64 16 6 C -0.09 -0.90 3.36 -90.11 -0.30 -1.20 16 7 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 8 C -0.11 -1.00 6.32 -24.74 -0.16 -1.16 16 9 C -0.15 -1.66 6.37 -25.02 -0.16 -1.82 16 10 C 0.09 1.13 2.99 -66.54 -0.20 0.94 16 11 H 0.08 1.23 7.13 -51.93 -0.37 0.86 16 12 N -0.68 -10.56 5.98 -98.55 -0.59 -11.15 16 13 C 0.10 1.90 2.24 -67.75 -0.15 1.75 16 14 H 0.03 0.62 7.77 -51.93 -0.40 0.22 16 15 C -0.11 -2.26 5.24 -26.64 -0.14 -2.40 16 16 C 0.01 0.34 5.92 -27.49 -0.16 0.18 16 17 C -0.48 -12.83 5.48 -98.92 -0.54 -13.37 16 18 C 0.07 2.06 5.44 -17.82 -0.10 1.96 16 19 N -0.89 -25.84 12.83 55.43 0.71 -25.13 16 20 Si 0.88 21.12 27.95 -169.99 -4.75 16.37 16 21 H -0.26 -5.90 5.58 56.52 0.32 -5.59 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C -0.03 -0.64 5.65 -27.48 -0.16 -0.80 16 25 C -0.09 -1.92 5.43 -26.63 -0.14 -2.06 16 26 C -0.11 -1.29 5.97 -25.61 -0.15 -1.45 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.76 7.57 -51.93 -0.39 0.37 16 36 H 0.33 4.70 7.67 -39.30 -0.30 4.40 16 37 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 40 H 0.05 1.46 7.20 -51.93 -0.37 1.08 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.04 0.95 4.35 -51.93 -0.23 0.72 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.03 0.53 7.39 -51.93 -0.38 0.15 16 46 H 0.08 1.08 7.92 -51.93 -0.41 0.67 16 47 H 0.08 1.13 6.85 -51.93 -0.36 0.78 16 LS Contribution 362.06 15.07 5.46 5.46 Total: -1.00 -29.72 362.06 -9.70 -39.42 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.35 Total: 0.17 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -1.49 Total: -13.41 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.12 Total: -36.27 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.69 Total: -11.73 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.75 Total: 16.37 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.72 -9.70 -39.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257035679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.477 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds