Wall clock time and date at job start Tue Mar 31 2020 08:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45201 * 109.46999 * 2 1 4 4 C 1.34228 * 116.99708 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00291 * 0.02562 * 4 3 2 6 6 C 1.50712 * 119.99864 * 180.02562 * 4 3 2 7 7 H 1.08996 * 110.43424 * 57.45564 * 6 4 3 8 8 C 1.54889 * 110.59496 * 294.83947 * 6 4 3 9 9 C 1.54885 * 102.74713 * 203.31981 * 8 6 4 10 10 C 1.54374 * 104.19642 * 37.97318 * 9 8 6 11 11 H 1.09006 * 110.06777 * 95.62176 * 10 9 8 12 12 N 1.46901 * 110.04828 * 217.08990 * 10 9 8 13 13 C 1.46904 * 110.99651 * 272.10851 * 12 10 9 14 14 H 1.08998 * 109.41709 * 35.14140 * 13 12 10 15 15 C 1.52958 * 109.41322 * 155.00367 * 13 12 10 16 16 C 1.53224 * 109.40384 * 183.70598 * 15 13 12 17 17 C 1.51261 * 108.53751 * 305.36494 * 16 15 13 18 18 C 1.37881 * 120.85364 * 231.37134 * 17 16 15 19 19 N 1.31511 * 119.99789 * 349.11052 * 18 17 16 20 20 Si 1.86803 * 119.99845 * 169.10656 * 18 17 16 21 21 H 1.48495 * 109.47347 * 354.66260 * 20 18 17 22 22 H 1.48507 * 109.46631 * 114.66442 * 20 18 17 23 23 H 1.48501 * 109.46768 * 234.65833 * 20 18 17 24 24 C 1.51272 * 118.29898 * 51.35433 * 17 16 15 25 25 C 1.52965 * 109.41431 * 275.35351 * 13 12 10 26 26 C 1.53875 * 106.54570 * 336.35084 * 10 9 8 27 27 H 1.09006 * 109.47204 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47541 * 299.99984 * 1 2 3 29 29 H 1.09006 * 109.47037 * 60.00051 * 1 2 3 30 30 H 1.09001 * 109.47541 * 240.00016 * 2 1 3 31 31 H 1.09006 * 109.47037 * 119.99949 * 2 1 3 32 32 H 1.08997 * 110.75980 * 321.63958 * 8 6 4 33 33 H 1.09007 * 110.75129 * 85.01072 * 8 6 4 34 34 H 1.09001 * 110.48407 * 156.62145 * 9 8 6 35 35 H 1.08994 * 110.49233 * 279.13557 * 9 8 6 36 36 H 1.00891 * 110.99834 * 36.06028 * 12 10 9 37 37 H 1.09005 * 109.47624 * 303.68232 * 15 13 12 38 38 H 1.08996 * 109.48257 * 63.71799 * 15 13 12 39 39 H 1.09000 * 109.62869 * 65.08559 * 16 15 13 40 40 H 1.09003 * 109.62292 * 185.46272 * 16 15 13 41 41 H 0.97004 * 120.00075 * 180.02562 * 19 18 17 42 42 H 1.08994 * 109.62858 * 68.36151 * 24 17 16 43 43 H 1.09004 * 109.62734 * 188.74528 * 24 17 16 44 44 H 1.09004 * 109.47709 * 296.27581 * 25 13 12 45 45 H 1.08996 * 109.48219 * 56.31770 * 25 13 12 46 46 H 1.09000 * 110.03169 * 240.72625 * 26 10 9 47 47 H 1.09000 * 110.03355 * 119.34577 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.5581 3.4989 0.8622 8 6 3.5666 3.6742 -1.3145 9 6 4.6757 4.7509 -1.4125 10 6 5.9435 4.0364 -0.8974 11 1 6.5169 3.6412 -1.7361 12 7 6.7675 4.9712 -0.1196 13 6 7.6963 5.7042 -0.9903 14 1 7.2178 5.8959 -1.9507 15 6 8.0672 7.0344 -0.3325 16 6 8.9619 7.8393 -1.2810 17 6 10.1475 6.9827 -1.6664 18 6 11.4350 7.4600 -1.5418 19 7 11.6425 8.7342 -1.2906 20 14 12.8846 6.2969 -1.7296 21 1 12.3871 4.9057 -1.8780 22 1 13.6684 6.6734 -2.9335 23 1 13.7508 6.3874 -0.5268 24 6 9.8845 5.5887 -2.1916 25 6 8.9564 4.8654 -1.2102 26 6 5.4624 2.8840 0.0017 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.6138 2.9925 -2.1637 33 1 2.5828 4.1383 -1.2446 34 1 4.8101 5.0670 -2.4470 35 1 4.4340 5.6061 -0.7816 36 1 6.1905 5.6070 0.4103 37 1 7.1601 7.6005 -0.1206 38 1 8.6024 6.8433 0.5976 39 1 8.3991 8.1089 -2.1747 40 1 9.3074 8.7432 -0.7794 41 1 12.5483 9.0701 -1.2033 42 1 9.4071 5.6499 -3.1695 43 1 10.8260 5.0460 -2.2772 44 1 9.4705 4.7257 -0.2592 45 1 8.6795 3.8941 -1.6202 46 1 5.8404 3.0185 1.0152 47 1 5.8031 1.9298 -0.4000 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257035679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:09 Heat of formation + Delta-G solvation = -131.341122 kcal Electronic energy + Delta-G solvation = -24202.348403 eV Core-core repulsion = 20768.874107 eV Total energy + Delta-G solvation = -3433.474296 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74567 -39.89557 -38.33560 -37.50438 -35.13418 -33.20195 -32.52528 -31.45829 -29.96046 -29.43089 -27.26771 -24.63092 -23.49015 -23.24678 -23.01328 -21.52162 -20.86239 -20.46719 -18.91155 -18.02510 -17.68689 -17.55212 -16.60532 -16.48429 -16.34095 -15.18972 -15.14655 -15.00669 -14.65560 -14.43004 -14.37398 -14.23503 -13.79514 -13.78063 -13.49662 -13.17719 -13.02848 -12.87502 -12.71625 -12.68662 -12.50124 -12.27619 -12.12968 -11.98023 -11.83228 -11.77370 -11.72661 -11.54579 -11.49995 -11.35085 -11.19979 -10.71704 -10.53274 -10.36350 -9.16221 -8.16393 -6.07159 1.13633 1.37330 1.42844 1.50927 1.66409 2.42750 3.06729 3.27220 3.48215 3.60520 3.75558 3.99881 4.08148 4.17190 4.22989 4.26289 4.35028 4.39190 4.46073 4.50140 4.57379 4.65513 4.67959 4.81800 4.85584 4.92533 4.96535 5.01933 5.04608 5.09755 5.10061 5.15298 5.19182 5.24201 5.28979 5.33910 5.37675 5.42934 5.48411 5.65068 5.67403 5.81017 5.92555 6.32948 6.39818 6.69280 6.71159 6.98297 7.49681 8.94765 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.038367 B = 0.002730 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.617214 B =10252.209938 C =10689.822529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.357 6.357 4 C 0.471 3.529 5 O -0.541 6.541 6 C -0.082 4.082 7 H 0.134 0.866 8 C -0.097 4.097 9 C -0.146 4.146 10 C 0.085 3.915 11 H 0.067 0.933 12 N -0.683 5.683 13 C 0.114 3.886 14 H 0.031 0.969 15 C -0.098 4.098 16 C 0.010 3.990 17 C -0.494 4.494 18 C 0.018 3.982 19 N -0.931 5.931 20 Si 0.931 3.069 21 H -0.239 1.239 22 H -0.283 1.283 23 H -0.289 1.289 24 C -0.029 4.029 25 C -0.088 4.088 26 C -0.099 4.099 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.346 0.654 37 H 0.053 0.947 38 H 0.042 0.958 39 H -0.004 1.004 40 H 0.021 0.979 41 H 0.261 0.739 42 H 0.016 0.984 43 H 0.038 0.962 44 H 0.041 0.959 45 H 0.045 0.955 46 H 0.080 0.920 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.010 -14.151 2.441 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.274 6.274 4 C 0.316 3.684 5 O -0.431 6.431 6 C -0.101 4.101 7 H 0.152 0.848 8 C -0.135 4.135 9 C -0.185 4.185 10 C -0.026 4.026 11 H 0.085 0.915 12 N -0.315 5.315 13 C 0.005 3.995 14 H 0.049 0.951 15 C -0.136 4.136 16 C -0.028 4.028 17 C -0.513 4.513 18 C -0.180 4.180 19 N -0.571 5.571 20 Si 0.757 3.243 21 H -0.163 1.163 22 H -0.210 1.210 23 H -0.215 1.215 24 C -0.067 4.067 25 C -0.126 4.126 26 C -0.138 4.138 27 H 0.116 0.884 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.166 0.834 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.015 0.985 40 H 0.039 0.961 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.099 0.901 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.225 -14.817 2.657 26.844 hybrid contribution 0.818 0.288 -0.502 1.002 sum -21.407 -14.529 2.155 25.962 Atomic orbital electron populations 1.21818 0.90320 1.04318 1.03805 1.23285 0.97174 0.79442 1.02375 1.86523 1.23895 1.33456 1.83522 1.24053 0.80571 0.92974 0.70827 1.90652 1.61167 1.44341 1.46911 1.22000 0.96040 0.88903 1.03187 0.84803 1.22362 1.00035 0.96781 0.94318 1.23099 0.94697 0.98410 1.02308 1.22217 0.92731 0.92857 0.94750 0.91460 1.60606 1.21563 1.22396 1.26910 1.21117 0.92408 0.92330 0.93608 0.95074 1.21612 0.98094 0.95258 0.98631 1.19299 0.93767 0.95643 0.94129 1.20647 0.91601 0.98479 1.40613 1.25626 1.01005 0.96003 0.95322 1.70029 1.21557 1.14500 1.51031 0.85912 0.79442 0.81621 0.77309 1.16287 1.20968 1.21527 1.19989 0.96804 0.94589 0.95273 1.21448 0.95669 0.96614 0.98874 1.22095 0.91690 0.98313 1.01663 0.88374 0.91150 0.91184 0.91602 0.91521 0.91431 0.88178 0.91279 0.89859 0.83437 0.92830 0.93918 0.98546 0.96055 0.92969 0.96572 0.94332 0.93966 0.93679 0.90122 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 71.98 0.74 -0.50 16 2 C 0.05 0.75 6.19 71.98 0.45 1.19 16 3 O -0.36 -6.64 10.22 -51.39 -0.53 -7.16 16 4 C 0.47 10.25 7.26 71.24 0.52 10.77 16 5 O -0.54 -15.38 15.17 21.96 0.33 -15.04 16 6 C -0.08 -1.47 3.36 -10.46 -0.04 -1.50 16 7 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 8 C -0.10 -1.52 6.32 31.88 0.20 -1.32 16 9 C -0.15 -2.75 6.37 31.70 0.20 -2.55 16 10 C 0.08 2.06 2.99 45.68 0.14 2.20 16 11 H 0.07 1.87 7.13 -2.38 -0.02 1.86 16 12 N -0.68 -19.55 5.98 -465.69 -2.78 -22.33 16 13 C 0.11 4.12 2.24 44.89 0.10 4.22 16 14 H 0.03 1.14 7.77 -2.39 -0.02 1.12 16 15 C -0.10 -3.96 5.24 30.66 0.16 -3.80 16 16 C 0.01 0.49 5.92 30.10 0.18 0.66 16 17 C -0.49 -26.36 5.48 -16.17 -0.09 -26.45 16 18 C 0.02 1.02 5.44 84.66 0.46 1.48 16 19 N -0.93 -55.68 12.83 21.45 0.28 -55.40 16 20 Si 0.93 43.70 27.95 68.60 1.92 45.62 16 21 H -0.24 -10.46 5.58 99.48 0.55 -9.90 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 C -0.03 -1.33 5.65 30.11 0.17 -1.16 16 25 C -0.09 -3.54 5.43 30.66 0.17 -3.37 16 26 C -0.10 -2.27 5.97 31.32 0.19 -2.09 16 27 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 31 H 0.07 1.01 8.13 -2.38 -0.02 0.99 16 32 H 0.07 1.13 8.05 -2.39 -0.02 1.11 16 33 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.42 7.57 -2.39 -0.02 1.41 16 36 H 0.35 8.68 7.67 -89.70 -0.69 7.99 16 37 H 0.05 1.87 8.05 -2.38 -0.02 1.85 16 38 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.00 -0.20 8.14 -2.39 -0.02 -0.21 16 40 H 0.02 1.18 7.20 -2.39 -0.02 1.16 16 41 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 42 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.04 1.78 4.35 -2.39 -0.01 1.76 16 44 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.04 1.66 7.39 -2.39 -0.02 1.64 16 46 H 0.08 1.91 7.92 -2.39 -0.02 1.90 16 47 H 0.06 1.75 6.85 -2.39 -0.02 1.73 16 Total: -1.00 -65.03 362.06 2.86 -62.17 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.10 Total: 14.35 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 3.54 Total: -22.20 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -2.51 Total: -77.73 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.19 Total: -22.21 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.92 Total: 45.62 kcal Total: -65.03 2.86 -62.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257035679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.173 kcal (2) G-P(sol) polarization free energy of solvation -65.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds