Wall clock time and date at job start Tue Mar 31 2020 08:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.46958 * 2 1 4 4 C 1.34237 * 116.99922 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99953 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99842 * 179.97438 * 4 3 2 7 7 H 1.08999 * 110.01674 * 58.61253 * 6 4 3 8 8 C 1.54266 * 110.03758 * 297.16905 * 6 4 3 9 9 C 1.54883 * 104.19707 * 217.10958 * 8 6 4 10 10 C 1.54885 * 102.75299 * 37.93545 * 9 8 6 11 11 H 1.09007 * 110.48337 * 80.73992 * 10 9 8 12 12 N 1.46902 * 110.60351 * 203.32662 * 10 9 8 13 13 C 1.46901 * 110.99801 * 246.32060 * 12 10 9 14 14 C 1.50695 * 110.01876 * 294.85407 * 13 12 10 15 15 H 1.07998 * 120.00166 * 118.33176 * 14 13 12 16 16 C 1.37875 * 120.00025 * 298.32946 * 14 13 12 17 17 N 1.31516 * 120.00050 * 354.36146 * 16 14 13 18 18 Si 1.86800 * 120.00052 * 174.35682 * 16 14 13 19 19 H 1.48499 * 109.47114 * 90.00181 * 18 16 14 20 20 H 1.48499 * 109.47418 * 210.00480 * 18 16 14 21 21 H 1.48496 * 109.47201 * 330.00267 * 18 16 14 22 22 C 1.54269 * 110.02737 * 173.46267 * 13 12 10 23 23 C 1.54973 * 104.15716 * 217.13770 * 22 13 12 24 24 C 1.54879 * 102.77829 * 37.88982 * 23 22 13 25 25 C 1.53878 * 110.03276 * 56.24976 * 13 12 10 26 26 C 1.53876 * 110.03164 * 180.02562 * 6 4 3 27 27 H 1.09000 * 109.47078 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47257 * 299.99866 * 1 2 3 29 29 H 1.09000 * 109.47348 * 60.00068 * 1 2 3 30 30 H 1.08991 * 109.47331 * 120.00169 * 2 1 3 31 31 H 1.09006 * 109.46954 * 240.00422 * 2 1 3 32 32 H 1.09002 * 110.48309 * 335.78576 * 8 6 4 33 33 H 1.08997 * 110.48781 * 98.42145 * 8 6 4 34 34 H 1.09004 * 110.75247 * 279.62404 * 9 8 6 35 35 H 1.08992 * 110.75920 * 156.25723 * 9 8 6 36 36 H 1.00902 * 111.00072 * 122.36967 * 12 10 9 37 37 H 0.96997 * 119.99870 * 179.97438 * 17 16 14 38 38 H 1.09000 * 110.48717 * 335.78292 * 22 13 12 39 39 H 1.09003 * 110.48765 * 98.43183 * 22 13 12 40 40 H 1.09000 * 110.71919 * 279.57217 * 23 22 13 41 41 H 1.09000 * 110.76040 * 156.22477 * 23 22 13 42 42 H 1.09003 * 110.49202 * 203.40584 * 24 23 22 43 43 H 1.08999 * 110.48920 * 80.75863 * 24 23 22 44 44 H 1.09006 * 110.03028 * 238.56843 * 25 13 12 45 45 H 1.09003 * 110.03039 * 359.97438 * 25 13 12 46 46 H 1.08999 * 110.03149 * 238.57159 * 26 6 4 47 47 H 1.09001 * 110.02882 * 359.95251 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 -0.0012 7 1 3.5707 3.4863 0.8731 8 6 3.5107 3.6784 -1.2906 9 6 4.7576 4.5208 -1.6574 10 6 5.9286 3.5755 -1.2915 11 1 6.0929 2.8467 -2.0853 12 7 7.1545 4.3446 -1.0396 13 6 8.1724 4.0620 -2.0605 14 6 8.6114 2.6235 -1.9668 15 1 8.4572 1.9564 -2.8020 16 6 9.2100 2.1590 -0.8149 17 7 9.4987 2.9944 0.1590 18 14 9.6110 0.3432 -0.6374 19 1 10.9784 0.0853 -1.1558 20 1 9.5441 -0.0408 0.7955 21 1 8.6291 -0.4584 -1.4110 22 6 9.3842 4.9978 -1.8716 23 6 9.8380 5.3266 -3.3164 24 6 8.4948 5.4523 -4.0772 25 6 7.6072 4.3505 -3.4623 26 6 5.4580 2.8720 -0.0023 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 3.2844 2.9663 -2.0842 33 1 2.6544 4.3261 -1.1026 34 1 4.7966 5.4327 -1.0615 35 1 4.7671 4.7533 -2.7222 36 1 7.5113 4.1633 -0.1133 37 1 9.9195 2.6676 0.9695 38 1 9.0863 5.9070 -1.3493 39 1 10.1793 4.4874 -1.3280 40 1 10.4394 4.5149 -3.7258 41 1 10.3872 6.2677 -3.3442 42 1 8.6414 5.2737 -5.1424 43 1 8.0529 6.4348 -3.9114 44 1 7.6512 3.4501 -4.0752 45 1 6.5775 4.6998 -3.3851 46 1 5.8544 3.3897 0.8711 47 1 5.7875 1.8330 -0.0016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257045810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:58 Heat of formation + Delta-G solvation = -108.440236 kcal Electronic energy + Delta-G solvation = -25441.067965 eV Core-core repulsion = 22008.586725 eV Total energy + Delta-G solvation = -3432.481239 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50635 -38.31555 -36.94067 -36.06042 -32.89837 -31.97814 -31.39551 -28.65957 -27.74101 -27.37051 -25.47291 -23.80663 -23.45505 -21.90953 -20.10500 -19.77166 -18.85086 -18.28420 -17.63987 -16.52412 -16.36257 -16.22614 -14.97193 -14.74364 -14.65072 -14.06971 -13.84342 -13.63019 -13.14031 -13.01799 -12.81077 -12.74740 -12.24359 -12.02682 -11.79584 -11.74908 -11.35269 -11.29694 -11.04671 -10.86941 -10.71899 -10.54427 -10.48973 -10.42492 -10.35565 -10.17005 -10.04067 -9.98214 -9.70713 -9.54496 -9.37685 -9.26578 -9.09673 -8.31411 -6.94354 -5.95950 -4.11314 2.41748 2.76985 3.29757 3.37951 3.43705 4.42909 4.71794 4.79047 4.87382 4.95291 5.01939 5.14459 5.19637 5.34320 5.61098 5.61209 5.68321 5.78317 5.81959 5.86288 5.92611 5.95720 5.97609 6.04855 6.17860 6.29418 6.48714 6.54015 6.55411 6.57923 6.63418 6.67595 6.83935 6.88335 6.93053 7.01849 7.10086 7.16025 7.27463 7.47187 7.63829 7.81810 7.95554 8.02195 8.33647 8.75992 8.97091 9.14908 9.58683 10.99074 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015973 B = 0.005007 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.538865 B = 5591.007022 C = 6757.372971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.360 6.360 4 C 0.464 3.536 5 O -0.501 6.501 6 C -0.082 4.082 7 H 0.104 0.896 8 C -0.109 4.109 9 C -0.115 4.115 10 C 0.100 3.900 11 H 0.066 0.934 12 N -0.676 5.676 13 C 0.233 3.767 14 C -0.528 4.528 15 H 0.050 0.950 16 C 0.072 3.928 17 N -0.886 5.886 18 Si 0.880 3.120 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.094 4.094 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.126 4.126 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.354 0.646 37 H 0.261 0.739 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.041 0.959 42 H 0.042 0.958 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.738 0.751 -0.668 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.278 6.278 4 C 0.307 3.693 5 O -0.387 6.387 6 C -0.101 4.101 7 H 0.122 0.878 8 C -0.147 4.147 9 C -0.153 4.153 10 C -0.011 4.011 11 H 0.084 0.916 12 N -0.308 5.308 13 C 0.144 3.856 14 C -0.567 4.567 15 H 0.069 0.931 16 C -0.130 4.130 17 N -0.525 5.525 18 Si 0.708 3.292 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.132 4.132 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.152 4.152 26 C -0.165 4.165 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.176 0.824 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.673 0.993 -0.781 13.731 hybrid contribution 0.547 -2.335 0.497 2.449 sum -13.126 -1.341 -0.285 13.197 Atomic orbital electron populations 1.21787 0.92832 1.02729 1.03416 1.22977 0.95175 0.80896 1.02516 1.86523 1.25113 1.31762 1.84390 1.24023 0.80066 0.93363 0.71856 1.90667 1.60152 1.43131 1.44796 1.21754 0.97987 0.88768 1.01622 0.87818 1.22300 0.99147 0.98508 0.94766 1.22709 0.93249 0.98623 1.00725 1.22024 0.91114 0.92748 0.95242 0.91637 1.61179 1.04938 1.55855 1.08838 1.19086 0.87579 0.92450 0.86506 1.21826 1.39199 0.95792 0.99929 0.93143 1.24897 0.94869 0.97044 0.96171 1.69806 1.42464 1.33485 1.06738 0.86776 0.78589 0.86460 0.77371 1.20838 1.21219 1.19959 1.22257 1.00055 0.97589 0.93341 1.22449 0.96093 0.98895 0.98482 1.22258 0.97045 0.98628 0.97612 1.22369 0.98150 0.96634 0.98051 1.22659 0.89736 1.03783 1.00292 0.90481 0.91577 0.91504 0.91465 0.91369 0.91794 0.91064 0.90960 0.91890 0.82400 0.92851 0.94358 0.89721 0.92501 0.94011 0.93929 0.93054 0.93457 0.92795 0.90869 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.83 16 2 C 0.06 0.67 6.19 37.16 0.23 0.90 16 3 O -0.36 -5.03 10.20 -39.28 -0.40 -5.43 16 4 C 0.46 7.61 7.10 36.00 0.26 7.87 16 5 O -0.50 -9.96 14.96 -18.75 -0.28 -10.24 16 6 C -0.08 -1.24 3.41 -90.65 -0.31 -1.55 16 7 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 8 C -0.11 -1.51 6.34 -25.08 -0.16 -1.67 16 9 C -0.11 -1.83 6.11 -24.74 -0.15 -1.98 16 10 C 0.10 1.98 2.15 -66.08 -0.14 1.84 16 11 H 0.07 1.48 6.49 -51.93 -0.34 1.14 16 12 N -0.68 -14.93 6.02 -91.39 -0.55 -15.48 16 13 C 0.23 5.42 0.48 -131.63 -0.06 5.36 16 14 C -0.53 -13.78 6.99 -34.44 -0.24 -14.02 16 15 H 0.05 1.37 7.34 -52.49 -0.39 0.98 16 16 C 0.07 1.91 5.02 -17.82 -0.09 1.82 16 17 N -0.89 -23.47 10.02 55.43 0.56 -22.91 16 18 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.09 -2.18 5.58 -25.03 -0.14 -2.32 16 23 C -0.12 -2.44 6.91 -24.70 -0.17 -2.61 16 24 C -0.12 -2.21 6.83 -25.08 -0.17 -2.38 16 25 C -0.11 -2.38 5.30 -25.61 -0.14 -2.52 16 26 C -0.13 -2.39 5.92 -25.64 -0.15 -2.54 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 31 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 32 H 0.06 0.90 7.85 -51.93 -0.41 0.49 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.99 6.85 -51.93 -0.36 0.63 16 36 H 0.35 8.55 6.17 -39.29 -0.24 8.31 16 37 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.04 0.88 8.05 -51.93 -0.42 0.46 16 39 H 0.08 2.20 6.07 -51.93 -0.31 1.88 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.05 1.02 7.37 -51.93 -0.38 0.64 16 45 H 0.05 1.07 5.33 -51.93 -0.28 0.79 16 46 H 0.07 1.38 7.56 -51.93 -0.39 0.99 16 47 H 0.08 1.88 6.40 -51.93 -0.33 1.54 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -27.82 358.15 -9.41 -37.23 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -8.05 Total: 9.63 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -1.06 Total: -14.64 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.01 Total: -38.39 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.68 Total: -15.67 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.82 -9.41 -37.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257045810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.213 kcal (2) G-P(sol) polarization free energy of solvation -27.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds